RNA–Protein interactions for RNA: ENST00000555221.3

CKS1BP1-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 1, humanhuman

BASIC

Gene CKS1BP1, Length 240 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP1-201ENST00000555221 PLCG2P16885 1265 aa11.91□□□□□ -0.5
CKS1BP1-201ENST00000555221 PPP1R15BQ5SWA1 713 aa11.9□□□□□ -0.5
CKS1BP1-201ENST00000555221 DCBLD2Q96PD2 775 aa11.9□□□□□ -0.5
CKS1BP1-201ENST00000555221 BOLA1Q9Y3E2 137 aa11.9□□□□□ -0.5
CKS1BP1-201ENST00000555221 LMOD2Q6P5Q4 547 aa11.89□□□□□ -0.51
CKS1BP1-201ENST00000555221 POTEHQ6S545 545 aa11.89□□□□□ -0.51
CKS1BP1-201ENST00000555221 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.89□□□□□ -0.51
CKS1BP1-201ENST00000555221 TMC2Q8TDI7 906 aa11.89□□□□□ -0.51
CKS1BP1-201ENST00000555221 TMEM121BQ9BXQ6 578 aaPredicted RBP11.88□□□□□ -0.51
CKS1BP1-201ENST00000555221 L3MBTL3Q96JM7 780 aaPredicted RBP11.87□□□□□ -0.51
CKS1BP1-201ENST00000555221 TESPA1A2RU30 521 aaPredicted RBP11.86□□□□□ -0.51
CKS1BP1-201ENST00000555221 SEMA3EO15041 775 aa11.85□□□□□ -0.51
CKS1BP1-201ENST00000555221 SEC24BO95487 1268 aa11.85□□□□□ -0.51
CKS1BP1-201ENST00000555221 SMYD5Q6GMV2 418 aa11.84□□□□□ -0.51
CKS1BP1-201ENST00000555221 FOXK1P85037 733 aa11.82□□□□□ -0.52
CKS1BP1-201ENST00000555221 DSG2Q14126 1118 aa11.82□□□□□ -0.52
CKS1BP1-201ENST00000555221 SLC39A7Q92504 469 aa11.82□□□□□ -0.52
CKS1BP1-201ENST00000555221 C7P10643 843 aa11.79□□□□□ -0.52
CKS1BP1-201ENST00000555221 PELP1Q8IZL8 1130 aaKnown RBP11.79□□□□□ -0.52
CKS1BP1-201ENST00000555221 C2orf72A6NCS6 295 aa11.77□□□□□ -0.53
CKS1BP1-201ENST00000555221 KIF3CO14782 793 aa11.77□□□□□ -0.53
CKS1BP1-201ENST00000555221 PLPP6Q8IY26 295 aa11.76□□□□□ -0.53
CKS1BP1-201ENST00000555221 COLQQ9Y215 455 aaPredicted RBP11.76□□□□□ -0.53
CKS1BP1-201ENST00000555221 SPDYE16A6NNV3 312 aaPredicted RBP11.75□□□□□ -0.53
CKS1BP1-201ENST00000555221 EMILIN3Q9NT22 766 aa11.75□□□□□ -0.53
CKS1BP1-201ENST00000555221 DPYSL4O14531 572 aa11.73□□□□□ -0.53
CKS1BP1-201ENST00000555221 METRNQ9UJH8 293 aa11.72□□□□□ -0.53
CKS1BP1-201ENST00000555221 PDIA6Q15084 440 aa11.71□□□□□ -0.53
CKS1BP1-201ENST00000555221 ZC3H15Q8WU90 426 aaKnown RBP11.7□□□□□ -0.54
CKS1BP1-201ENST00000555221 SP7Q8TDD2 431 aaPredicted RBP11.69□□□□□ -0.54
CKS1BP1-201ENST00000555221 C3orf67Q6ZVT6 689 aa11.68□□□□□ -0.54
CKS1BP1-201ENST00000555221 POTEFA5A3E0 1075 aa11.67□□□□□ -0.54
CKS1BP1-201ENST00000555221 MLLT3P42568 568 aaPredicted RBP11.66□□□□□ -0.54
CKS1BP1-201ENST00000555221 MAP3K9P80192 1104 aa11.66□□□□□ -0.54
CKS1BP1-201ENST00000555221 TMEM92Q6UXU6 159 aa11.66□□□□□ -0.54
CKS1BP1-201ENST00000555221 POTEIP0CG38 1075 aa11.65□□□□□ -0.54
CKS1BP1-201ENST00000555221 RBM26Q5T8P6 1007 aaKnown RBP11.61□□□□□ -0.55
CKS1BP1-201ENST00000555221 OXER1Q8TDS5 423 aa11.61□□□□□ -0.55
CKS1BP1-201ENST00000555221 ZMYND10O75800 440 aa11.6□□□□□ -0.55
CKS1BP1-201ENST00000555221 GPIHBP1Q8IV16 184 aa11.6□□□□□ -0.55
CKS1BP1-201ENST00000555221 UPF1Q92900 1129 aaKnown RBP eCLIP11.6□□□□□ -0.55
CKS1BP1-201ENST00000555221 TBC1D12O60347 775 aa11.59□□□□□ -0.55
CKS1BP1-201ENST00000555221 ZNF316A6NFI3 1004 aaPredicted RBP11.57□□□□□ -0.56
CKS1BP1-201ENST00000555221 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.57□□□□□ -0.56
CKS1BP1-201ENST00000555221 BARGINQ6ZT62 677 aa11.55□□□□□ -0.56
CKS1BP1-201ENST00000555221 GRXCR2A6NFK2 248 aa11.54□□□□□ -0.56
CKS1BP1-201ENST00000555221 PTCD2Q8WV60 388 aaKnown RBP11.54□□□□□ -0.56
CKS1BP1-201ENST00000555221 SLC24A3Q9HC58 644 aa11.54□□□□□ -0.56
CKS1BP1-201ENST00000555221 SLC34A2O95436 690 aa11.53□□□□□ -0.56
CKS1BP1-201ENST00000555221 PTGER2P43116 358 aa11.52□□□□□ -0.57
CKS1BP1-201ENST00000555221 EVI5O60447 810 aa11.51□□□□□ -0.57
CKS1BP1-201ENST00000555221 TMEM132AQ24JP5 1023 aa11.48□□□□□ -0.57
CKS1BP1-201ENST00000555221 BRPF1P55201 1214 aaPredicted RBP11.47□□□□□ -0.57
CKS1BP1-201ENST00000555221 KRI1Q8N9T8 703 aaKnown RBP11.47□□□□□ -0.57
CKS1BP1-201ENST00000555221 OSBPP22059 807 aa11.46□□□□□ -0.57
CKS1BP1-201ENST00000555221 DDX12PQ92771 950 aa11.46□□□□□ -0.57
CKS1BP1-201ENST00000555221 AK7Q96M32 723 aa11.46□□□□□ -0.57
CKS1BP1-201ENST00000555221 NUTM2FA1L443 756 aa11.45□□□□□ -0.58
CKS1BP1-201ENST00000555221 NEUROD2Q15784 382 aa11.45□□□□□ -0.58
CKS1BP1-201ENST00000555221 ANO8Q9HCE9 1232 aaPredicted RBP11.44□□□□□ -0.58
CKS1BP1-201ENST00000555221 GPR37O15354 613 aa11.42□□□□□ -0.58
CKS1BP1-201ENST00000555221 FCHSD2O94868 740 aa11.4□□□□□ -0.58
CKS1BP1-201ENST00000555221 PCDHGA4Q9Y5G9 962 aa11.4□□□□□ -0.58
CKS1BP1-201ENST00000555221 EPAS1Q99814 870 aa11.39□□□□□ -0.59
CKS1BP1-201ENST00000555221 PHF14O94880 888 aa11.38□□□□□ -0.59
CKS1BP1-201ENST00000555221 HIC1Q14526 733 aa11.38□□□□□ -0.59
CKS1BP1-201ENST00000555221 GNPATO15228 680 aa11.37□□□□□ -0.59
CKS1BP1-201ENST00000555221 MINK1Q8N4C8 1332 aaPredicted RBP11.36□□□□□ -0.59
CKS1BP1-201ENST00000555221 MAP2K5Q13163 448 aa11.36□□□□□ -0.59
CKS1BP1-201ENST00000555221 DOK7Q18PE1 504 aa11.36□□□□□ -0.59
CKS1BP1-201ENST00000555221 MAMSTRQ6ZN01 415 aa11.36□□□□□ -0.59
CKS1BP1-201ENST00000555221 SCUBE2Q9NQ36 999 aa11.35□□□□□ -0.59
CKS1BP1-201ENST00000555221 TRIM66O15016 1216 aa11.34□□□□□ -0.59
CKS1BP1-201ENST00000555221 RIMBP2O15034 1052 aa11.33□□□□□ -0.6
CKS1BP1-201ENST00000555221 PRIM1P49642 420 aaKnown RBP11.33□□□□□ -0.6
CKS1BP1-201ENST00000555221 EN1Q05925 392 aaPredicted RBP11.33□□□□□ -0.6
CKS1BP1-201ENST00000555221 DAXXQ9UER7 740 aaPredicted RBP11.33□□□□□ -0.6
CKS1BP1-201ENST00000555221 POTEJP0CG39 1038 aa11.32□□□□□ -0.6
CKS1BP1-201ENST00000555221 PTGDRQ13258 359 aa11.32□□□□□ -0.6
CKS1BP1-201ENST00000555221 TYW1BQ6NUM6 668 aa11.32□□□□□ -0.6
CKS1BP1-201ENST00000555221 SLAIN1Q8ND83 568 aa11.32□□□□□ -0.6
CKS1BP1-201ENST00000555221 FBXW7Q969H0 707 aa11.32□□□□□ -0.6
CKS1BP1-201ENST00000555221 MAP3K7O43318 606 aa11.31□□□□□ -0.6
CKS1BP1-201ENST00000555221 JPH4Q96JJ6 628 aa11.31□□□□□ -0.6
CKS1BP1-201ENST00000555221 ZSWIM6Q9HCJ5 1215 aa11.31□□□□□ -0.6
CKS1BP1-201ENST00000555221 KDM4FA0A1W2PPD8 638 aa11.3□□□□□ -0.6
CKS1BP1-201ENST00000555221 IRF6O14896 467 aa11.3□□□□□ -0.6
CKS1BP1-201ENST00000555221 PCDHGA10Q9Y5H3 936 aa11.3□□□□□ -0.6
CKS1BP1-201ENST00000555221 GTF3C3Q9Y5Q9 886 aa11.3□□□□□ -0.6
CKS1BP1-201ENST00000555221 POTEB2H3BUK9 544 aa11.29□□□□□ -0.6
CKS1BP1-201ENST00000555221 PDE4DQ08499 809 aa11.29□□□□□ -0.6
CKS1BP1-201ENST00000555221 CCDC102AQ96A19 550 aa11.29□□□□□ -0.6
CKS1BP1-201ENST00000555221 HOXB3P14651 431 aaPredicted RBP11.27□□□□□ -0.61
CKS1BP1-201ENST00000555221 RBM33Q96EV2 1170 aaKnown RBP11.26□□□□□ -0.61
CKS1BP1-201ENST00000555221 FOSBP53539 338 aa11.25□□□□□ -0.61
CKS1BP1-201ENST00000555221 ZNF710Q8N1W2 664 aa11.25□□□□□ -0.61
CKS1BP1-201ENST00000555221 KDM4CQ9H3R0 1056 aa11.25□□□□□ -0.61
CKS1BP1-201ENST00000555221 GPBP1L1Q9HC44 474 aaPredicted RBP11.25□□□□□ -0.61
CKS1BP1-201ENST00000555221 NUDT7P0C024 238 aa11.24□□□□□ -0.61
CKS1BP1-201ENST00000555221 FECHP22830 423 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 91.2 ms