RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 NEUROD2Q15784 382 aa12.41□□□□□ -0.42
LIMA1-210ENST00000552045 MKRN3Q13064 507 aaKnown RBP12.4□□□□□ -0.42
LIMA1-210ENST00000552045 ASTLQ6HA08 431 aaPredicted RBP12.39□□□□□ -0.43
LIMA1-210ENST00000552045 ATMINO43313 823 aaPredicted RBP12.38□□□□□ -0.43
LIMA1-210ENST00000552045 TRIM35Q9UPQ4 493 aa12.37□□□□□ -0.43
LIMA1-210ENST00000552045 ATN1P54259 1190 aaPredicted RBP12.36□□□□□ -0.43
LIMA1-210ENST00000552045 C14orf37Q86TY3 774 aa12.36□□□□□ -0.43
LIMA1-210ENST00000552045 DCBLD2Q96PD2 775 aa12.34□□□□□ -0.43
LIMA1-210ENST00000552045 BARGINQ6ZT62 677 aa12.33□□□□□ -0.44
LIMA1-210ENST00000552045 ILDR1Q86SU0 546 aaPredicted RBP12.32□□□□□ -0.44
LIMA1-210ENST00000552045 PPP1R15BQ5SWA1 713 aa12.3□□□□□ -0.44
LIMA1-210ENST00000552045 GPHNQ9NQX3 736 aaPredicted RBP12.3□□□□□ -0.44
LIMA1-210ENST00000552045 MLLT3P42568 568 aaPredicted RBP12.28□□□□□ -0.44
LIMA1-210ENST00000552045 IER5LQ5T953 404 aa12.28□□□□□ -0.44
LIMA1-210ENST00000552045 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.28□□□□□ -0.44
LIMA1-210ENST00000552045 RBM26Q5T8P6 1007 aaKnown RBP12.27□□□□□ -0.45
LIMA1-210ENST00000552045 GPIHBP1Q8IV16 184 aa12.26□□□□□ -0.45
LIMA1-210ENST00000552045 AK7Q96M32 723 aa12.24□□□□□ -0.45
LIMA1-210ENST00000552045 POTEIP0CG38 1075 aa12.23□□□□□ -0.45
LIMA1-210ENST00000552045 PELP1Q8IZL8 1130 aaKnown RBP12.23□□□□□ -0.45
LIMA1-210ENST00000552045 ARXQ96QS3 562 aa12.23□□□□□ -0.45
LIMA1-210ENST00000552045 IRX5P78411 483 aaPredicted RBP12.22□□□□□ -0.45
LIMA1-210ENST00000552045 EMILIN3Q9NT22 766 aa12.22□□□□□ -0.45
LIMA1-210ENST00000552045 DPYSL4O14531 572 aa12.21□□□□□ -0.45
LIMA1-210ENST00000552045 SPDYE16A6NNV3 312 aaPredicted RBP12.2□□□□□ -0.46
LIMA1-210ENST00000552045 DSG2Q14126 1118 aa12.2□□□□□ -0.46
LIMA1-210ENST00000552045 KRI1Q8N9T8 703 aaKnown RBP12.2□□□□□ -0.46
LIMA1-210ENST00000552045 SLC39A7Q92504 469 aa12.2□□□□□ -0.46
LIMA1-210ENST00000552045 OCEL1Q9H607 264 aa12.19□□□□□ -0.46
LIMA1-210ENST00000552045 PDIA6Q15084 440 aa12.18□□□□□ -0.46
LIMA1-210ENST00000552045 DPY19L2Q6NUT2 758 aa12.18□□□□□ -0.46
LIMA1-210ENST00000552045 PDCD7Q8N8D1 485 aaKnown RBP12.18□□□□□ -0.46
LIMA1-210ENST00000552045 C7P10643 843 aa12.17□□□□□ -0.46
LIMA1-210ENST00000552045 MICALL2Q8IY33 904 aa12.17□□□□□ -0.46
LIMA1-210ENST00000552045 FOXK1P85037 733 aa12.16□□□□□ -0.46
LIMA1-210ENST00000552045 PLCG2P16885 1265 aa12.15□□□□□ -0.46
LIMA1-210ENST00000552045 TMC2Q8TDI7 906 aa12.15□□□□□ -0.46
LIMA1-210ENST00000552045 GPBP1L1Q9HC44 474 aaPredicted RBP12.15□□□□□ -0.46
LIMA1-210ENST00000552045 DAXXQ9UER7 740 aaPredicted RBP12.14□□□□□ -0.47
LIMA1-210ENST00000552045 METRNQ9UJH8 293 aa12.13□□□□□ -0.47
LIMA1-210ENST00000552045 SEC24BO95487 1268 aa12.12□□□□□ -0.47
LIMA1-210ENST00000552045 COLQQ9Y215 455 aaPredicted RBP12.11□□□□□ -0.47
LIMA1-210ENST00000552045 TRIM66O15016 1216 aa12.1□□□□□ -0.47
LIMA1-210ENST00000552045 POTEFA5A3E0 1075 aa12.09□□□□□ -0.47
LIMA1-210ENST00000552045 PLPP6Q8IY26 295 aa12.09□□□□□ -0.47
LIMA1-210ENST00000552045 KDM4CQ9H3R0 1056 aa12.09□□□□□ -0.47
LIMA1-210ENST00000552045 PDE4DQ08499 809 aa12.08□□□□□ -0.48
LIMA1-210ENST00000552045 GPR37O15354 613 aa12.07□□□□□ -0.48
LIMA1-210ENST00000552045 IL27Q8NEV9 243 aa12.07□□□□□ -0.48
LIMA1-210ENST00000552045 TMEM121BQ9BXQ6 578 aaPredicted RBP12.07□□□□□ -0.48
LIMA1-210ENST00000552045 C2orf72A6NCS6 295 aa12.05□□□□□ -0.48
LIMA1-210ENST00000552045 KIF3CO14782 793 aa12.05□□□□□ -0.48
LIMA1-210ENST00000552045 L3MBTL3Q96JM7 780 aaPredicted RBP12.05□□□□□ -0.48
LIMA1-210ENST00000552045 BOLA1Q9Y3E2 137 aa12.05□□□□□ -0.48
LIMA1-210ENST00000552045 G3V3G9 751 aa12.02□□□□□ -0.49
LIMA1-210ENST00000552045 MAP3K9P80192 1104 aa12.02□□□□□ -0.49
LIMA1-210ENST00000552045 HOMEZQ8IX15 550 aa12.02□□□□□ -0.49
LIMA1-210ENST00000552045 GRXCR2A6NFK2 248 aa12.01□□□□□ -0.49
LIMA1-210ENST00000552045 SUPT5HO00267 1087 aaKnown RBP12□□□□□ -0.49
LIMA1-210ENST00000552045 MINK1Q8N4C8 1332 aaPredicted RBP12□□□□□ -0.49
LIMA1-210ENST00000552045 NUTM2FA1L443 756 aa11.98□□□□□ -0.49
LIMA1-210ENST00000552045 MAP2K5Q13163 448 aa11.97□□□□□ -0.49
LIMA1-210ENST00000552045 OSBPP22059 807 aa11.96□□□□□ -0.49
LIMA1-210ENST00000552045 UPF1Q92900 1129 aaKnown RBP eCLIP11.95□□□□□ -0.5
LIMA1-210ENST00000552045 IRF6O14896 467 aa11.94□□□□□ -0.5
LIMA1-210ENST00000552045 PTGER2P43116 358 aa11.94□□□□□ -0.5
LIMA1-210ENST00000552045 CCDC102AQ96A19 550 aa11.94□□□□□ -0.5
LIMA1-210ENST00000552045 OXER1Q8TDS5 423 aa11.93□□□□□ -0.5
LIMA1-210ENST00000552045 FAM117AQ9C073 453 aa11.93□□□□□ -0.5
LIMA1-210ENST00000552045 GNPATO15228 680 aa11.92□□□□□ -0.5
LIMA1-210ENST00000552045 AMHR2Q16671 573 aa11.92□□□□□ -0.5
LIMA1-210ENST00000552045 HIC1Q14526 733 aa11.91□□□□□ -0.5
LIMA1-210ENST00000552045 TMEM92Q6UXU6 159 aa11.9□□□□□ -0.5
LIMA1-210ENST00000552045 DDX12PQ92771 950 aa11.9□□□□□ -0.5
LIMA1-210ENST00000552045 FCHSD2O94868 740 aa11.89□□□□□ -0.51
LIMA1-210ENST00000552045 C3orf67Q6ZVT6 689 aa11.89□□□□□ -0.51
LIMA1-210ENST00000552045 ZNF316A6NFI3 1004 aaPredicted RBP11.88□□□□□ -0.51
LIMA1-210ENST00000552045 TBC1D12O60347 775 aa11.88□□□□□ -0.51
LIMA1-210ENST00000552045 DDRGK1Q96HY6 314 aa11.88□□□□□ -0.51
LIMA1-210ENST00000552045 FECHP22830 423 aa11.87□□□□□ -0.51
LIMA1-210ENST00000552045 PARP9Q8IXQ6 854 aa11.87□□□□□ -0.51
LIMA1-210ENST00000552045 ZMYND15Q9H091 742 aa11.87□□□□□ -0.51
LIMA1-210ENST00000552045 PLEKHG3A1L390 1219 aa11.86□□□□□ -0.51
LIMA1-210ENST00000552045 POTEB2H3BUK9 544 aa11.85□□□□□ -0.51
LIMA1-210ENST00000552045 EVI5O60447 810 aa11.84□□□□□ -0.51
LIMA1-210ENST00000552045 POTEJP0CG39 1038 aa11.83□□□□□ -0.52
LIMA1-210ENST00000552045 PRIM1P49642 420 aaKnown RBP11.83□□□□□ -0.52
LIMA1-210ENST00000552045 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.83□□□□□ -0.52
LIMA1-210ENST00000552045 PTGDRQ13258 359 aa11.82□□□□□ -0.52
LIMA1-210ENST00000552045 RSPH6AQ9H0K4 717 aa11.8□□□□□ -0.52
LIMA1-210ENST00000552045 MAMSTRQ6ZN01 415 aa11.79□□□□□ -0.52
LIMA1-210ENST00000552045 TTLL12Q14166 644 aaPredicted RBP11.78□□□□□ -0.52
LIMA1-210ENST00000552045 PTCD2Q8WV60 388 aaKnown RBP11.78□□□□□ -0.52
LIMA1-210ENST00000552045 ANO8Q9HCE9 1232 aaPredicted RBP11.76□□□□□ -0.53
LIMA1-210ENST00000552045 GOPCQ9HD26 462 aa11.76□□□□□ -0.53
LIMA1-210ENST00000552045 SCUBE2Q9NQ36 999 aa11.76□□□□□ -0.53
LIMA1-210ENST00000552045 GIGYF2Q6Y7W6 1299 aaKnown RBP11.73□□□□□ -0.53
LIMA1-210ENST00000552045 SLC34A2O95436 690 aa11.72□□□□□ -0.53
LIMA1-210ENST00000552045 MS4A1P11836 297 aa11.71□□□□□ -0.53
LIMA1-210ENST00000552045 EN1Q05925 392 aaPredicted RBP11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms