RNA–Protein interactions for RNA: ENST00000545266.1

COPA-206, Transcript of coatomer protein complex subunit alpha, humanhuman

TSL 2

Gene COPA, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-206ENST00000545266 WDR70Q9NW82 654 aa13.52□□□□□ -0.25
COPA-206ENST00000545266 GPHNQ9NQX3 736 aaPredicted RBP13.51□□□□□ -0.25
COPA-206ENST00000545266 LARP6Q9BRS8 491 aaKnown RBP13.49□□□□□ -0.25
COPA-206ENST00000545266 P3H3Q8IVL6 736 aa13.48□□□□□ -0.25
COPA-206ENST00000545266 KIF3CO14782 793 aa13.46□□□□□ -0.25
COPA-206ENST00000545266 DDX27Q96GQ7 796 aaKnown RBP13.45□□□□□ -0.26
COPA-206ENST00000545266 G3V3G9 751 aa13.44□□□□□ -0.26
COPA-206ENST00000545266 CAMK2BQ13554 666 aa13.44□□□□□ -0.26
COPA-206ENST00000545266 KCNV2Q8TDN2 545 aa13.44□□□□□ -0.26
COPA-206ENST00000545266 E2F4Q16254 413 aa13.43□□□□□ -0.26
COPA-206ENST00000545266 ARIH1Q9Y4X5 557 aaPredicted RBP13.41□□□□□ -0.26
COPA-206ENST00000545266 FOXK1P85037 733 aa13.4□□□□□ -0.26
COPA-206ENST00000545266 TMEM92Q6UXU6 159 aa13.4□□□□□ -0.26
COPA-206ENST00000545266 ARHGEF1Q92888 912 aaKnown RBP13.39□□□□□ -0.27
COPA-206ENST00000545266 PPP1R15BQ5SWA1 713 aa13.38□□□□□ -0.27
COPA-206ENST00000545266 TMC2Q8TDI7 906 aa13.38□□□□□ -0.27
COPA-206ENST00000545266 DSG2Q14126 1118 aa13.37□□□□□ -0.27
COPA-206ENST00000545266 C2orf72A6NCS6 295 aa13.36□□□□□ -0.27
COPA-206ENST00000545266 NBR1Q14596 966 aa13.34□□□□□ -0.27
COPA-206ENST00000545266 POTEJP0CG39 1038 aa13.31□□□□□ -0.28
COPA-206ENST00000545266 C3orf67Q6ZVT6 689 aa13.29□□□□□ -0.28
COPA-206ENST00000545266 PLPP6Q8IY26 295 aa13.29□□□□□ -0.28
COPA-206ENST00000545266 POTEB2H3BUK9 544 aa13.28□□□□□ -0.28
COPA-206ENST00000545266 EMILIN3Q9NT22 766 aa13.27□□□□□ -0.29
COPA-206ENST00000545266 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.25□□□□□ -0.29
COPA-206ENST00000545266 SLC34A2O95436 690 aa13.19□□□□□ -0.3
COPA-206ENST00000545266 TESPA1A2RU30 521 aaPredicted RBP13.18□□□□□ -0.3
COPA-206ENST00000545266 OXER1Q8TDS5 423 aa13.18□□□□□ -0.3
COPA-206ENST00000545266 MAMSTRQ6ZN01 415 aa13.17□□□□□ -0.3
COPA-206ENST00000545266 SPDYE16A6NNV3 312 aaPredicted RBP13.15□□□□□ -0.3
COPA-206ENST00000545266 DPYSL4O14531 572 aa13.15□□□□□ -0.3
COPA-206ENST00000545266 PDIA6Q15084 440 aa13.15□□□□□ -0.3
COPA-206ENST00000545266 SEMA3EO15041 775 aa13.14□□□□□ -0.31
COPA-206ENST00000545266 PTCD2Q8WV60 388 aaKnown RBP13.14□□□□□ -0.31
COPA-206ENST00000545266 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.1□□□□□ -0.31
COPA-206ENST00000545266 SCUBE2Q9NQ36 999 aa13.1□□□□□ -0.31
COPA-206ENST00000545266 MAP3K9P80192 1104 aa13.07□□□□□ -0.32
COPA-206ENST00000545266 SLAIN1Q8ND83 568 aa13.06□□□□□ -0.32
COPA-206ENST00000545266 PTGER2P43116 358 aa13.04□□□□□ -0.32
COPA-206ENST00000545266 UPF1Q92900 1129 aaKnown RBP eCLIP13.04□□□□□ -0.32
COPA-206ENST00000545266 ANO8Q9HCE9 1232 aaPredicted RBP13.04□□□□□ -0.32
COPA-206ENST00000545266 TBC1D12O60347 775 aa13.03□□□□□ -0.32
COPA-206ENST00000545266 HOXB3P14651 431 aaPredicted RBP13.03□□□□□ -0.32
COPA-206ENST00000545266 SMYD5Q6GMV2 418 aa13.03□□□□□ -0.32
COPA-206ENST00000545266 KDM4FA0A1W2PPD8 638 aa13.02□□□□□ -0.33
COPA-206ENST00000545266 TULP1O00294 542 aaPredicted RBP13.01□□□□□ -0.33
COPA-206ENST00000545266 MLLT3P42568 568 aaPredicted RBP13.01□□□□□ -0.33
COPA-206ENST00000545266 LMOD2Q6P5Q4 547 aa13.01□□□□□ -0.33
COPA-206ENST00000545266 OTUD5Q96G74 571 aa13.01□□□□□ -0.33
COPA-206ENST00000545266 TPRNQ4KMQ1 711 aa13□□□□□ -0.33
COPA-206ENST00000545266 EVI5O60447 810 aa12.99□□□□□ -0.33
COPA-206ENST00000545266 PCDHGA4Q9Y5G9 962 aa12.99□□□□□ -0.33
COPA-206ENST00000545266 PRKCSHP14314 528 aaPredicted RBP12.98□□□□□ -0.33
COPA-206ENST00000545266 DOK7Q18PE1 504 aa12.98□□□□□ -0.33
COPA-206ENST00000545266 LHX8Q68G74 356 aa12.98□□□□□ -0.33
COPA-206ENST00000545266 ZSWIM6Q9HCJ5 1215 aa12.98□□□□□ -0.33
COPA-206ENST00000545266 GPR153Q6NV75 609 aa12.92□□□□□ -0.34
COPA-206ENST00000545266 SNPHO15079 494 aa12.91□□□□□ -0.34
COPA-206ENST00000545266 ZNF316A6NFI3 1004 aaPredicted RBP12.9□□□□□ -0.34
COPA-206ENST00000545266 OSBPP22059 807 aa12.9□□□□□ -0.34
COPA-206ENST00000545266 RIMBP2O15034 1052 aa12.89□□□□□ -0.35
COPA-206ENST00000545266 RBM26Q5T8P6 1007 aaKnown RBP12.87□□□□□ -0.35
COPA-206ENST00000545266 ZC3H15Q8WU90 426 aaKnown RBP12.87□□□□□ -0.35
COPA-206ENST00000545266 GRXCR2A6NFK2 248 aa12.86□□□□□ -0.35
COPA-206ENST00000545266 ARSIQ5FYB1 569 aa12.86□□□□□ -0.35
COPA-206ENST00000545266 DDX12PQ92771 950 aa12.85□□□□□ -0.35
COPA-206ENST00000545266 PHF14O94880 888 aa12.84□□□□□ -0.35
COPA-206ENST00000545266 EPAS1Q99814 870 aa12.83□□□□□ -0.36
COPA-206ENST00000545266 PRIM1P49642 420 aaKnown RBP12.82□□□□□ -0.36
COPA-206ENST00000545266 ZNF710Q8N1W2 664 aa12.82□□□□□ -0.36
COPA-206ENST00000545266 KHSRPQ92945 711 aaKnown RBP eCLIP12.82□□□□□ -0.36
COPA-206ENST00000545266 JPH4Q96JJ6 628 aa12.82□□□□□ -0.36
COPA-206ENST00000545266 ZMYND10O75800 440 aa12.81□□□□□ -0.36
COPA-206ENST00000545266 HOXB1P14653 301 aaPredicted RBP12.81□□□□□ -0.36
COPA-206ENST00000545266 PCDHGA10Q9Y5H3 936 aa12.81□□□□□ -0.36
COPA-206ENST00000545266 GPR37O15354 613 aa12.8□□□□□ -0.36
COPA-206ENST00000545266 NUDT7P0C024 238 aa12.8□□□□□ -0.36
COPA-206ENST00000545266 FOSBP53539 338 aa12.8□□□□□ -0.36
COPA-206ENST00000545266 GPIHBP1Q8IV16 184 aa12.78□□□□□ -0.36
COPA-206ENST00000545266 EN1Q05925 392 aaPredicted RBP12.76□□□□□ -0.37
COPA-206ENST00000545266 TYW1BQ6NUM6 668 aa12.76□□□□□ -0.37
COPA-206ENST00000545266 FBXW7Q969H0 707 aa12.76□□□□□ -0.37
COPA-206ENST00000545266 BARGINQ6ZT62 677 aa12.75□□□□□ -0.37
COPA-206ENST00000545266 LHX6Q9UPM6 363 aa12.73□□□□□ -0.37
COPA-206ENST00000545266 PSDA5PKW4 1024 aaPredicted RBP12.72□□□□□ -0.37
COPA-206ENST00000545266 NUTM2FA1L443 756 aa12.7□□□□□ -0.38
COPA-206ENST00000545266 PTGDRQ13258 359 aa12.7□□□□□ -0.38
COPA-206ENST00000545266 ZDHHC16Q969W1 377 aa12.7□□□□□ -0.38
COPA-206ENST00000545266 NPDC1Q9NQX5 325 aaPredicted RBP12.7□□□□□ -0.38
COPA-206ENST00000545266 ZNF454Q8N9F8 522 aa12.69□□□□□ -0.38
COPA-206ENST00000545266 FCHSD2O94868 740 aa12.68□□□□□ -0.38
COPA-206ENST00000545266 HIC1Q14526 733 aa12.67□□□□□ -0.38
COPA-206ENST00000545266 MAP3K7O43318 606 aa12.66□□□□□ -0.38
COPA-206ENST00000545266 ST18O60284 1047 aa12.65□□□□□ -0.38
COPA-206ENST00000545266 C6orf132Q5T0Z8 1188 aa12.65□□□□□ -0.38
COPA-206ENST00000545266 ADAM33Q9BZ11 813 aa12.65□□□□□ -0.38
COPA-206ENST00000545266 GNPATO15228 680 aa12.64□□□□□ -0.39
COPA-206ENST00000545266 TSR1Q2NL82 804 aaKnown RBP12.64□□□□□ -0.39
COPA-206ENST00000545266 PPP4R3BQ5MIZ7 849 aa12.64□□□□□ -0.39
COPA-206ENST00000545266 RBM33Q96EV2 1170 aaKnown RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms