RNA–Protein interactions for RNA: ENST00000542685.5

XRCC4-206, Transcript of X-ray repair cross complementing 4, humanhuman

TSL 1 (best)

Gene XRCC4, Length 1,243 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC4-206ENST00000542685 MARVELD3Q96A59 401 aa13.82□□□□□ -0.2
XRCC4-206ENST00000542685 DOK7Q18PE1 504 aa13.81□□□□□ -0.2
XRCC4-206ENST00000542685 ZNF710Q8N1W2 664 aa13.81□□□□□ -0.2
XRCC4-206ENST00000542685 C2orf72A6NCS6 295 aa13.8□□□□□ -0.2
XRCC4-206ENST00000542685 TMC2Q8TDI7 906 aa13.78□□□□□ -0.2
XRCC4-206ENST00000542685 KIF3CO14782 793 aa13.77□□□□□ -0.21
XRCC4-206ENST00000542685 GTPBP6O43824 516 aaPredicted RBP13.77□□□□□ -0.21
XRCC4-206ENST00000542685 RIMBP2O15034 1052 aa13.75□□□□□ -0.21
XRCC4-206ENST00000542685 EMP3P54852 163 aa13.74□□□□□ -0.21
XRCC4-206ENST00000542685 HOXB1P14653 301 aaPredicted RBP13.69□□□□□ -0.22
XRCC4-206ENST00000542685 CDAN1Q8IWY9 1227 aa13.68□□□□□ -0.22
XRCC4-206ENST00000542685 PCDH10Q9P2E7 1040 aa13.68□□□□□ -0.22
XRCC4-206ENST00000542685 BBXQ8WY36 941 aaPredicted RBP13.67□□□□□ -0.22
XRCC4-206ENST00000542685 FAM205CA6NFA0 338 aa13.66□□□□□ -0.22
XRCC4-206ENST00000542685 ZSWIM6Q9HCJ5 1215 aa13.66□□□□□ -0.22
XRCC4-206ENST00000542685 ARSIQ5FYB1 569 aa13.64□□□□□ -0.23
XRCC4-206ENST00000542685 GPHNQ9NQX3 736 aaPredicted RBP13.64□□□□□ -0.23
XRCC4-206ENST00000542685 GPR153Q6NV75 609 aa13.63□□□□□ -0.23
XRCC4-206ENST00000542685 HS3ST6Q96QI5 342 aa13.61□□□□□ -0.23
XRCC4-206ENST00000542685 POTEB3A0JP26 581 aa13.6□□□□□ -0.23
XRCC4-206ENST00000542685 FOXK1P85037 733 aa13.6□□□□□ -0.23
XRCC4-206ENST00000542685 DSG2Q14126 1118 aa13.6□□□□□ -0.23
XRCC4-206ENST00000542685 POTEBQ6S5H4 581 aa13.6□□□□□ -0.23
XRCC4-206ENST00000542685 PLPP6Q8IY26 295 aa13.6□□□□□ -0.23
XRCC4-206ENST00000542685 KHSRPQ92945 711 aaKnown RBP eCLIP13.6□□□□□ -0.236e-10■■■□□ 17.2
XRCC4-206ENST00000542685 ERBB3P21860 1342 aa13.59□□□□□ -0.23
XRCC4-206ENST00000542685 PLSCR2Q9NRY7 297 aa13.58□□□□□ -0.24
XRCC4-206ENST00000542685 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.57□□□□□ -0.24
XRCC4-206ENST00000542685 SLC34A2O95436 690 aa13.56□□□□□ -0.24
XRCC4-206ENST00000542685 CRISPLD2Q9H0B8 497 aa13.56□□□□□ -0.24
XRCC4-206ENST00000542685 NCKAP5LQ9HCH0 1330 aa13.55□□□□□ -0.24
XRCC4-206ENST00000542685 PCDHGA4Q9Y5G9 962 aa13.54□□□□□ -0.24
XRCC4-206ENST00000542685 PDE4AP27815 886 aa13.53□□□□□ -0.24
XRCC4-206ENST00000542685 VARS2Q5ST30 1063 aaKnown RBP13.53□□□□□ -0.24
XRCC4-206ENST00000542685 SPRYD3Q8NCJ5 442 aa13.53□□□□□ -0.24
XRCC4-206ENST00000542685 NUDT7P0C024 238 aa13.52□□□□□ -0.25
XRCC4-206ENST00000542685 LARP6Q9BRS8 491 aaKnown RBP13.51□□□□□ -0.25
XRCC4-206ENST00000542685 PPP1R15BQ5SWA1 713 aa13.5□□□□□ -0.25
XRCC4-206ENST00000542685 CADPS2Q86UW7 1296 aa13.5□□□□□ -0.25
XRCC4-206ENST00000542685 CFAP44Q96MT7 982 aa13.49□□□□□ -0.25
XRCC4-206ENST00000542685 PAXIP1Q6ZW49 1069 aaPredicted RBP13.48□□□□□ -0.25
XRCC4-206ENST00000542685 PTCD2Q8WV60 388 aaKnown RBP13.46□□□□□ -0.25
XRCC4-206ENST00000542685 ZNF316A6NFI3 1004 aaPredicted RBP13.45□□□□□ -0.26
XRCC4-206ENST00000542685 DDX27Q96GQ7 796 aaKnown RBP13.45□□□□□ -0.26
XRCC4-206ENST00000542685 UPF1Q92900 1129 aaKnown RBP eCLIP13.44□□□□□ -0.26
XRCC4-206ENST00000542685 TBC1D12O60347 775 aa13.42□□□□□ -0.26
XRCC4-206ENST00000542685 KRTAP3-3Q9BYR6 98 aa13.42□□□□□ -0.26
XRCC4-206ENST00000542685 KRTAP3-2Q9BYR7 98 aa13.42□□□□□ -0.26
XRCC4-206ENST00000542685 LHX6Q9UPM6 363 aa13.42□□□□□ -0.26
XRCC4-206ENST00000542685 MFSD10Q14728 455 aa13.39□□□□□ -0.27
XRCC4-206ENST00000542685 ZNF687Q8N1G0 1237 aa13.39□□□□□ -0.27
XRCC4-206ENST00000542685 OXER1Q8TDS5 423 aa13.38□□□□□ -0.27
XRCC4-206ENST00000542685 KDM4FA0A1W2PPD8 638 aa13.35□□□□□ -0.27
XRCC4-206ENST00000542685 SPNS2Q8IVW8 549 aa13.32□□□□□ -0.28
XRCC4-206ENST00000542685 EMILIN3Q9NT22 766 aa13.29□□□□□ -0.28
XRCC4-206ENST00000542685 MAP3K9P80192 1104 aa13.28□□□□□ -0.28
XRCC4-206ENST00000542685 PSDA5PKW4 1024 aaPredicted RBP13.27□□□□□ -0.29
XRCC4-206ENST00000542685 EVI5O60447 810 aa13.25□□□□□ -0.29
XRCC4-206ENST00000542685 AXIN2Q9Y2T1 843 aa13.25□□□□□ -0.29
XRCC4-206ENST00000542685 PPP4R3BQ5MIZ7 849 aa13.23□□□□□ -0.29
XRCC4-206ENST00000542685 MMRN1Q13201 1228 aa13.22□□□□□ -0.29
XRCC4-206ENST00000542685 POTEEQ6S8J3 1075 aa13.22□□□□□ -0.29
XRCC4-206ENST00000542685 ANKRD13DQ6ZTN6 518 aa13.22□□□□□ -0.29
XRCC4-206ENST00000542685 CAMK2BQ13554 666 aa13.21□□□□□ -0.29
XRCC4-206ENST00000542685 PBX2P40425 430 aa13.2□□□□□ -0.3
XRCC4-206ENST00000542685 ZNF454Q8N9F8 522 aa13.2□□□□□ -0.3
XRCC4-206ENST00000542685 LSM11P83369 360 aaKnown RBP eCLIP13.19□□□□□ -0.31e-11■■■■■ 50.1
XRCC4-206ENST00000542685 ANO8Q9HCE9 1232 aaPredicted RBP13.19□□□□□ -0.3
XRCC4-206ENST00000542685 TSHZ2Q9NRE2 1034 aa13.19□□□□□ -0.3
XRCC4-206ENST00000542685 WDR70Q9NW82 654 aa13.19□□□□□ -0.3
XRCC4-206ENST00000542685 DPYSL4O14531 572 aa13.17□□□□□ -0.3
XRCC4-206ENST00000542685 ARHGAP33O14559 1287 aa13.16□□□□□ -0.3
XRCC4-206ENST00000542685 PSEN2P49810 448 aa13.15□□□□□ -0.3
XRCC4-206ENST00000542685 FOSBP53539 338 aa13.15□□□□□ -0.3
XRCC4-206ENST00000542685 E2F4Q16254 413 aa13.12□□□□□ -0.31
XRCC4-206ENST00000542685 JPH4Q96JJ6 628 aa13.12□□□□□ -0.31
XRCC4-206ENST00000542685 KCNK17Q96T54 332 aa13.11□□□□□ -0.31
XRCC4-206ENST00000542685 DMRTA1Q5VZB9 504 aa13.1□□□□□ -0.31
XRCC4-206ENST00000542685 KCNH8Q96L42 1107 aa13.09□□□□□ -0.31
XRCC4-206ENST00000542685 ZDHHC16Q969W1 377 aa13.08□□□□□ -0.32
XRCC4-206ENST00000542685 BCL2L12Q9HB09 334 aa13.07□□□□□ -0.32
XRCC4-206ENST00000542685 MYT1LQ9UL68 1186 aa13.07□□□□□ -0.32
XRCC4-206ENST00000542685 PLCB2Q00722 1185 aa13.06□□□□□ -0.32
XRCC4-206ENST00000542685 ADAM33Q9BZ11 813 aa13.06□□□□□ -0.32
XRCC4-206ENST00000542685 PCDHGA10Q9Y5H3 936 aa13.06□□□□□ -0.32
XRCC4-206ENST00000542685 ADGRD1Q6QNK2 874 aa13.05□□□□□ -0.32
XRCC4-206ENST00000542685 PTPREP23469 700 aa13.03□□□□□ -0.32
XRCC4-206ENST00000542685 PTGER2P43116 358 aa13.03□□□□□ -0.32
XRCC4-206ENST00000542685 RNF166Q96A37 237 aaPredicted RBP13.03□□□□□ -0.32
XRCC4-206ENST00000542685 PHF14O94880 888 aa13.02□□□□□ -0.33
XRCC4-206ENST00000542685 DDX12PQ92771 950 aa13.02□□□□□ -0.33
XRCC4-206ENST00000542685 TK2O00142 265 aa13□□□□□ -0.33
XRCC4-206ENST00000542685 PDIA6Q15084 440 aa13□□□□□ -0.33
XRCC4-206ENST00000542685 TYW1BQ6NUM6 668 aa13□□□□□ -0.33
XRCC4-206ENST00000542685 SPDYE16A6NNV3 312 aaPredicted RBP12.98□□□□□ -0.33
XRCC4-206ENST00000542685 FBXW7Q969H0 707 aa12.98□□□□□ -0.33
XRCC4-206ENST00000542685 ARIH1Q9Y4X5 557 aaPredicted RBP12.97□□□□□ -0.33
XRCC4-206ENST00000542685 EPAS1Q99814 870 aa12.96□□□□□ -0.33
XRCC4-206ENST00000542685 RBM33Q96EV2 1170 aaKnown RBP12.95□□□□□ -0.34
XRCC4-206ENST00000542685 VPS9D1Q9Y2B5 631 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms