RNA–Protein interactions for RNA: ENST00000541122.6

SMARCA4-207, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS P4 TSL 5 BASIC

Gene SMARCA4, Length 5,139 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-207ENST00000541122 TPRNQ4KMQ1 711 aa18.96■□□□□ 0.63
SMARCA4-207ENST00000541122 HSP90AA2PQ14568 343 aaPredicted RBP18.95■□□□□ 0.62
SMARCA4-207ENST00000541122 SPRYD3Q8NCJ5 442 aa18.95■□□□□ 0.62
SMARCA4-207ENST00000541122 GSE1Q14687 1217 aa18.95■□□□□ 0.62
SMARCA4-207ENST00000541122 HAP1P54257 671 aaPredicted RBP18.95■□□□□ 0.62
SMARCA4-207ENST00000541122 IPO8O15397 1037 aaKnown RBP18.94■□□□□ 0.62
SMARCA4-207ENST00000541122 ROCK2O75116 1388 aaKnown RBP18.93■□□□□ 0.62
SMARCA4-207ENST00000541122 DCAF11Q8TEB1 546 aa18.93■□□□□ 0.62
SMARCA4-207ENST00000541122 GZF1Q9H116 711 aaPredicted RBP18.93■□□□□ 0.62
SMARCA4-207ENST00000541122 PHLDB1Q86UU1 1377 aa18.92■□□□□ 0.62
SMARCA4-207ENST00000541122 DRC7Q8IY82 874 aa18.91■□□□□ 0.62
SMARCA4-207ENST00000541122 DDX11L8A8MPP1 907 aa18.89■□□□□ 0.62
SMARCA4-207ENST00000541122 KANK4Q5T7N3 995 aaPredicted RBP18.89■□□□□ 0.61
SMARCA4-207ENST00000541122 FMN1Q68DA7 1419 aa18.88■□□□□ 0.61
SMARCA4-207ENST00000541122 CARMIL1Q5VZK9 1371 aa18.88■□□□□ 0.61
SMARCA4-207ENST00000541122 DHX57Q6P158 1386 aaKnown RBP18.88■□□□□ 0.61
SMARCA4-207ENST00000541122 KCNJ4P48050 445 aa18.88■□□□□ 0.61
SMARCA4-207ENST00000541122 U2SURPO15042 1029 aaKnown RBP18.87■□□□□ 0.61
SMARCA4-207ENST00000541122 ZBED9Q6R2W3 1325 aa18.87■□□□□ 0.61
SMARCA4-207ENST00000541122 FGD1P98174 961 aa18.87■□□□□ 0.61
SMARCA4-207ENST00000541122 PDE4AP27815 886 aa18.87■□□□□ 0.61
SMARCA4-207ENST00000541122 NLRP13Q86W25 1043 aa18.86■□□□□ 0.61
SMARCA4-207ENST00000541122 CENPQQ7L2Z9 268 aaPredicted RBP18.85■□□□□ 0.61
SMARCA4-207ENST00000541122 CALD1Q05682 793 aaKnown RBP18.84■□□□□ 0.61
SMARCA4-207ENST00000541122 MORC1Q86VD1 984 aa18.84■□□□□ 0.61
SMARCA4-207ENST00000541122 FAM161AQ3B820 660 aa18.84■□□□□ 0.61
SMARCA4-207ENST00000541122 GOLGA2Q08379 1002 aa18.83■□□□□ 0.6
SMARCA4-207ENST00000541122 OS9Q13438 667 aaPredicted RBP18.83■□□□□ 0.6
SMARCA4-207ENST00000541122 HTATSF1O43719 755 aaKnown RBP18.82■□□□□ 0.6
SMARCA4-207ENST00000541122 MPHOSPH9Q99550 1183 aa18.82■□□□□ 0.6
SMARCA4-207ENST00000541122 SKOR2Q2VWA4 1001 aaPredicted RBP18.81■□□□□ 0.6
SMARCA4-207ENST00000541122 CCDC88BA6NC98 1476 aa18.8■□□□□ 0.6
SMARCA4-207ENST00000541122 MFAP1P55081 439 aaKnown RBP18.79■□□□□ 0.6
SMARCA4-207ENST00000541122 CECR2Q9BXF3 1484 aa18.79■□□□□ 0.6
SMARCA4-207ENST00000541122 PHF14O94880 888 aa18.79■□□□□ 0.6
SMARCA4-207ENST00000541122 KIF15Q9NS87 1388 aa18.78■□□□□ 0.6
SMARCA4-207ENST00000541122 CUX2O14529 1486 aa18.78■□□□□ 0.6
SMARCA4-207ENST00000541122 CSPP1Q1MSJ5 1256 aa18.78■□□□□ 0.6
SMARCA4-207ENST00000541122 PKD2Q13563 968 aa18.77■□□□□ 0.6
SMARCA4-207ENST00000541122 VSIG10Q8N0Z9 540 aa18.77■□□□□ 0.6
SMARCA4-207ENST00000541122 POGKQ9P215 609 aa18.77■□□□□ 0.6
SMARCA4-207ENST00000541122 TNNT3P45378 269 aaPredicted RBP18.77■□□□□ 0.59
SMARCA4-207ENST00000541122 KCNH8Q96L42 1107 aa18.76■□□□□ 0.59
SMARCA4-207ENST00000541122 ABCC8Q09428 1581 aa18.76■□□□□ 0.59
SMARCA4-207ENST00000541122 ITPRIPQ8IWB1 547 aa18.76■□□□□ 0.59
SMARCA4-207ENST00000541122 MYBBP1AQ9BQG0 1328 aaKnown RBP18.75■□□□□ 0.59
SMARCA4-207ENST00000541122 RRP1P56182 461 aaKnown RBP18.75■□□□□ 0.59
SMARCA4-207ENST00000541122 KIAA1211Q6ZU35 1233 aa18.75■□□□□ 0.59
SMARCA4-207ENST00000541122 KANK1Q14678 1352 aa18.75■□□□□ 0.59
SMARCA4-207ENST00000541122 CENPJQ9HC77 1338 aaPredicted RBP18.74■□□□□ 0.59
SMARCA4-207ENST00000541122 PRKRIP1Q9H875 184 aaPredicted RBP18.73■□□□□ 0.59
SMARCA4-207ENST00000541122 L3MBTL2Q969R5 705 aa18.72■□□□□ 0.59
SMARCA4-207ENST00000541122 C14orf37Q86TY3 774 aa18.71■□□□□ 0.59
SMARCA4-207ENST00000541122 ARID3AQ99856 593 aa18.71■□□□□ 0.59
SMARCA4-207ENST00000541122 TPM4P67936 248 aa18.7■□□□□ 0.58
SMARCA4-207ENST00000541122 EIF3AQ14152 1382 aaKnown RBP18.69■□□□□ 0.58
SMARCA4-207ENST00000541122 NAP1L2Q9ULW6 460 aaPredicted RBP18.69■□□□□ 0.58
SMARCA4-207ENST00000541122 ST18O60284 1047 aa18.68■□□□□ 0.58
SMARCA4-207ENST00000541122 ZBTB7CA1YPR0 619 aa18.67■□□□□ 0.58
SMARCA4-207ENST00000541122 AMER1Q5JTC6 1135 aaPredicted RBP18.67■□□□□ 0.58
SMARCA4-207ENST00000541122 ANKRD30AQ9BXX3 1397 aa18.66■□□□□ 0.58
SMARCA4-207ENST00000541122 EXOC6Q8TAG9 804 aa18.66■□□□□ 0.58
SMARCA4-207ENST00000541122 CGNL1Q0VF96 1302 aa18.66■□□□□ 0.58
SMARCA4-207ENST00000541122 MROH2BQ7Z745 1585 aa18.66■□□□□ 0.58
SMARCA4-207ENST00000541122 SMC4Q9NTJ3 1288 aa18.66■□□□□ 0.58
SMARCA4-207ENST00000541122 FOXD1Q16676 465 aa18.65■□□□□ 0.58
SMARCA4-207ENST00000541122 U2AF1L5P0DN76 240 aaPredicted RBP18.65■□□□□ 0.58
SMARCA4-207ENST00000541122 U2AF1Q01081 240 aaKnown RBP eCLIP18.65■□□□□ 0.58
SMARCA4-207ENST00000541122 HMMRO75330 724 aa18.64■□□□□ 0.57
SMARCA4-207ENST00000541122 DDX49Q9Y6V7 483 aaKnown RBP18.63■□□□□ 0.57
SMARCA4-207ENST00000541122 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.63■□□□□ 0.57
SMARCA4-207ENST00000541122 GOLGA6L1Q8N7Z2 621 aa18.62■□□□□ 0.57
SMARCA4-207ENST00000541122 NUP155O75694 1391 aa18.62■□□□□ 0.57
SMARCA4-207ENST00000541122 EIF4G1Q04637 1599 aaKnown RBP18.62■□□□□ 0.57
SMARCA4-207ENST00000541122 CHMP5Q9NZZ3 219 aa18.61■□□□□ 0.57
SMARCA4-207ENST00000541122 CHMP4AQ9BY43 222 aa18.61■□□□□ 0.57
SMARCA4-207ENST00000541122 SRPK2P78362 688 aaKnown RBP18.6■□□□□ 0.57
SMARCA4-207ENST00000541122 NGEFQ8N5V2 710 aa18.6■□□□□ 0.57
SMARCA4-207ENST00000541122 SLC4A3P48751 1232 aa18.6■□□□□ 0.57
SMARCA4-207ENST00000541122 HDGFL2Q7Z4V5 671 aaPredicted RBP18.6■□□□□ 0.57
SMARCA4-207ENST00000541122 CRBNQ96SW2 442 aa18.6■□□□□ 0.57
SMARCA4-207ENST00000541122 RTF1Q92541 710 aaKnown RBP18.59■□□□□ 0.57
SMARCA4-207ENST00000541122 TOP2AP11388 1531 aaKnown RBP18.58■□□□□ 0.57
SMARCA4-207ENST00000541122 E9PSI1 815 aa18.58■□□□□ 0.57
SMARCA4-207ENST00000541122 MAP7D2Q96T17 732 aa18.58■□□□□ 0.56
SMARCA4-207ENST00000541122 GNL2Q13823 731 aaKnown RBP18.57■□□□□ 0.56
SMARCA4-207ENST00000541122 APBB1O00213 710 aa18.57■□□□□ 0.56
SMARCA4-207ENST00000541122 MTERF4Q7Z6M4 381 aaKnown RBP18.57■□□□□ 0.56
SMARCA4-207ENST00000541122 KIF16BQ96L93 1317 aa18.56■□□□□ 0.56
SMARCA4-207ENST00000541122 PLPPR3Q6T4P5 718 aa18.56■□□□□ 0.56
SMARCA4-207ENST00000541122 CCDC34Q96HJ3 373 aa18.56■□□□□ 0.56
SMARCA4-207ENST00000541122 FAM43AQ8N2R8 423 aa18.56■□□□□ 0.56
SMARCA4-207ENST00000541122 SENP3Q9H4L4 574 aaPredicted RBP18.56■□□□□ 0.56
SMARCA4-207ENST00000541122 NFKBIBQ15653 356 aa18.56■□□□□ 0.56
SMARCA4-207ENST00000541122 ATP6V1DQ9Y5K8 247 aa18.56■□□□□ 0.56
SMARCA4-207ENST00000541122 HDAC5Q9UQL6 1122 aa18.55■□□□□ 0.56
SMARCA4-207ENST00000541122 FOXD4L1Q9NU39 408 aa18.54■□□□□ 0.56
SMARCA4-207ENST00000541122 CLUAP1Q96AJ1 413 aa18.54■□□□□ 0.56
SMARCA4-207ENST00000541122 AAMPQ13685 434 aa18.54■□□□□ 0.56
SMARCA4-207ENST00000541122 GPATCH3Q96I76 525 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms