RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 ZMYM4Q5VZL5 1548 aa8.23□□□□□ -1.09
USH1C-210ENST00000534556 ARHGEF12Q9NZN5 1544 aa8.23□□□□□ -1.09
USH1C-210ENST00000534556 SAMD9LQ8IVG5 1584 aa8.22□□□□□ -1.09
USH1C-210ENST00000534556 BCORL1Q5H9F3 1711 aa8.22□□□□□ -1.09
USH1C-210ENST00000534556 ARHGEF40Q8TER5 1519 aa8.22□□□□□ -1.09
USH1C-210ENST00000534556 YEATS2Q9ULM3 1422 aa8.21□□□□□ -1.09
USH1C-210ENST00000534556 DENND4BO75064 1496 aaPredicted RBP8.21□□□□□ -1.09
USH1C-210ENST00000534556 KIDINS220Q9ULH0 1771 aa8.21□□□□□ -1.1
USH1C-210ENST00000534556 ARHGAP5Q13017 1502 aa8.21□□□□□ -1.1
USH1C-210ENST00000534556 TIAM1Q13009 1591 aa8.21□□□□□ -1.1
USH1C-210ENST00000534556 PHLDB1Q86UU1 1377 aa8.21□□□□□ -1.1
USH1C-210ENST00000534556 ABCC1P33527 1531 aa8.2□□□□□ -1.1
USH1C-210ENST00000534556 GPATCH8Q9UKJ3 1502 aaKnown RBP8.2□□□□□ -1.1
USH1C-210ENST00000534556 KDM5CP41229 1560 aa8.2□□□□□ -1.1
USH1C-210ENST00000534556 ABCA6Q8N139 1617 aa8.2□□□□□ -1.1
USH1C-210ENST00000534556 SCAPERQ9BY12 1400 aa8.2□□□□□ -1.1
USH1C-210ENST00000534556 MADDQ8WXG6 1647 aa8.19□□□□□ -1.1
USH1C-210ENST00000534556 POGZQ7Z3K3 1410 aa8.19□□□□□ -1.1
USH1C-210ENST00000534556 CDK11AQ9UQ88 783 aaPredicted RBP8.18□□□□□ -1.1
USH1C-210ENST00000534556 VPS8Q8N3P4 1428 aa8.18□□□□□ -1.1
USH1C-210ENST00000534556 TRAPPC8Q9Y2L5 1435 aa8.18□□□□□ -1.1
USH1C-210ENST00000534556 EHBP1L1Q8N3D4 1523 aa8.18□□□□□ -1.1
USH1C-210ENST00000534556 DIP2CQ9Y2E4 1556 aa8.18□□□□□ -1.1
USH1C-210ENST00000534556 SUPT6HQ7KZ85 1726 aaKnown RBP8.17□□□□□ -1.1
USH1C-210ENST00000534556 ZFYVE16Q7Z3T8 1539 aa8.17□□□□□ -1.1
USH1C-210ENST00000534556 HECW2Q9P2P5 1572 aa8.17□□□□□ -1.1
USH1C-210ENST00000534556 RIMS1Q86UR5 1692 aaKnown RBP8.17□□□□□ -1.1
USH1C-210ENST00000534556 FER1L4A9Z1Z3 1794 aa8.16□□□□□ -1.1
USH1C-210ENST00000534556 EFCAB2Q5VUJ9 269 aa8.16□□□□□ -1.1
USH1C-210ENST00000534556 AFAP1Q8N556 730 aa8.16□□□□□ -1.1
USH1C-210ENST00000534556 SYCP2Q9BX26 1530 aa8.16□□□□□ -1.1
USH1C-210ENST00000534556 ZNF644Q9H582 1327 aaPredicted RBP8.15□□□□□ -1.1
USH1C-210ENST00000534556 KANK4Q5T7N3 995 aaPredicted RBP8.15□□□□□ -1.1
USH1C-210ENST00000534556 NCOA2Q15596 1464 aa8.14□□□□□ -1.11
USH1C-210ENST00000534556 MTUS2Q5JR59 1369 aa8.14□□□□□ -1.11
USH1C-210ENST00000534556 ADGBQ8N7X0 1667 aa8.14□□□□□ -1.11
USH1C-210ENST00000534556 INO80Q9ULG1 1556 aaPredicted RBP8.14□□□□□ -1.11
USH1C-210ENST00000534556 ZNF518AQ6AHZ1 1483 aa8.13□□□□□ -1.11
USH1C-210ENST00000534556 LRRC9Q6ZRR7 1453 aa8.13□□□□□ -1.11
USH1C-210ENST00000534556 MAGI2Q86UL8 1455 aa8.13□□□□□ -1.11
USH1C-210ENST00000534556 MAP3K1Q13233 1512 aa8.13□□□□□ -1.11
USH1C-210ENST00000534556 HNRNPMP52272 730 aaKnown RBP eCLIP8.12□□□□□ -1.11
USH1C-210ENST00000534556 REREQ9P2R6 1566 aa8.12□□□□□ -1.11
USH1C-210ENST00000534556 ATP10AO60312 1499 aa8.12□□□□□ -1.11
USH1C-210ENST00000534556 MBD5Q9P267 1494 aa8.12□□□□□ -1.11
USH1C-210ENST00000534556 MLH3Q9UHC1 1453 aa8.12□□□□□ -1.11
USH1C-210ENST00000534556 ILDR1Q86SU0 546 aaPredicted RBP8.11□□□□□ -1.11
USH1C-210ENST00000534556 PTPRMP28827 1452 aa8.11□□□□□ -1.11
USH1C-210ENST00000534556 CCNB3Q8WWL7 1395 aa8.1□□□□□ -1.11
USH1C-210ENST00000534556 ATP7AQ04656 1500 aa8.1□□□□□ -1.11
USH1C-210ENST00000534556 ZNF777Q9ULD5 760 aaPredicted RBP8.1□□□□□ -1.11
USH1C-210ENST00000534556 C3P01024 1663 aa8.1□□□□□ -1.11
USH1C-210ENST00000534556 C9orf84Q5VXU9 1444 aa8.1□□□□□ -1.11
USH1C-210ENST00000534556 CAMSAP2Q08AD1 1489 aa8.09□□□□□ -1.11
USH1C-210ENST00000534556 KIAA1107Q9UPP5 1409 aa8.09□□□□□ -1.11
USH1C-210ENST00000534556 PLXNC1O60486 1568 aa8.09□□□□□ -1.11
USH1C-210ENST00000534556 CFDP1Q9UEE9 299 aaPredicted RBP8.08□□□□□ -1.12
USH1C-210ENST00000534556 CROCC2H7BZ55 1655 aa8.08□□□□□ -1.12
USH1C-210ENST00000534556 ARID4BQ4LE39 1312 aaPredicted RBP8.07□□□□□ -1.12
USH1C-210ENST00000534556 ARHGEF5Q12774 1597 aa8.07□□□□□ -1.12
USH1C-210ENST00000534556 MLECQ14165 292 aa8.07□□□□□ -1.12
USH1C-210ENST00000534556 AGLP35573 1532 aa8.07□□□□□ -1.12
USH1C-210ENST00000534556 CLTCQ00610 1675 aaKnown RBP8.06□□□□□ -1.12
USH1C-210ENST00000534556 PTPN23Q9H3S7 1636 aa8.06□□□□□ -1.12
USH1C-210ENST00000534556 SETD1BQ9UPS6 1966 aaKnown RBP8.06□□□□□ -1.12
USH1C-210ENST00000534556 PLEKHH2Q8IVE3 1493 aa8.06□□□□□ -1.12
USH1C-210ENST00000534556 CFAP65Q6ZU64 1925 aaKnown RBP8.05□□□□□ -1.12
USH1C-210ENST00000534556 SPAG9O60271 1321 aaKnown RBP8.04□□□□□ -1.12
USH1C-210ENST00000534556 MYOM3Q5VTT5 1437 aa8.04□□□□□ -1.12
USH1C-210ENST00000534556 LMTK3Q96Q04 1460 aa8.04□□□□□ -1.12
USH1C-210ENST00000534556 MAST1Q9Y2H9 1570 aa8.04□□□□□ -1.12
USH1C-210ENST00000534556 MROH2AA6NES4 1674 aa8.04□□□□□ -1.12
USH1C-210ENST00000534556 STRCQ7RTU9 1775 aa8.03□□□□□ -1.12
USH1C-210ENST00000534556 PREX1Q8TCU6 1659 aa8.03□□□□□ -1.12
USH1C-210ENST00000534556 A2MP01023 1474 aa8.03□□□□□ -1.12
USH1C-210ENST00000534556 CCDC141Q6ZP82 1450 aa8.03□□□□□ -1.12
USH1C-210ENST00000534556 CEBPAP49715 358 aaPredicted RBP8.03□□□□□ -1.12
USH1C-210ENST00000534556 PLPPR3Q6T4P5 718 aa8.02□□□□□ -1.13
USH1C-210ENST00000534556 MYT1LQ9UL68 1186 aa8.02□□□□□ -1.13
USH1C-210ENST00000534556 CEP152O94986 1710 aa8.02□□□□□ -1.13
USH1C-210ENST00000534556 DNMT1P26358 1616 aaKnown RBP8.02□□□□□ -1.13
USH1C-210ENST00000534556 MROH1Q8NDA8 1641 aa8.02□□□□□ -1.13
USH1C-210ENST00000534556 RTEL1-TNFRSF6BF6WH68 1400 aa8.01□□□□□ -1.13
USH1C-210ENST00000534556 MIA2Q96PC5 1412 aa8.01□□□□□ -1.13
USH1C-210ENST00000534556 TCOF1Q13428 1488 aaKnown RBP8□□□□□ -1.13
USH1C-210ENST00000534556 ABCC5O15440 1437 aa8□□□□□ -1.13
USH1C-210ENST00000534556 FGD6Q6ZV73 1430 aa8□□□□□ -1.13
USH1C-210ENST00000534556 RNF17Q9BXT8 1623 aaKnown RBP8□□□□□ -1.13
USH1C-210ENST00000534556 PPARGC1BQ86YN6 1023 aaKnown RBP7.99□□□□□ -1.13
USH1C-210ENST00000534556 DHX29Q7Z478 1369 aaKnown RBP7.98□□□□□ -1.13
USH1C-210ENST00000534556 HSPA2P54652 639 aa7.98□□□□□ -1.13
USH1C-210ENST00000534556 EIF2AK4Q9P2K8 1649 aaKnown RBP7.97□□□□□ -1.13
USH1C-210ENST00000534556 DEPDC5O75140 1603 aa7.96□□□□□ -1.13
USH1C-210ENST00000534556 MYO3AQ8NEV4 1616 aa7.96□□□□□ -1.13
USH1C-210ENST00000534556 DAPK1P53355 1430 aa7.96□□□□□ -1.13
USH1C-210ENST00000534556 PTPRKQ15262 1439 aa7.96□□□□□ -1.13
USH1C-210ENST00000534556 ZNF142P52746 1687 aaPredicted RBP7.96□□□□□ -1.13
USH1C-210ENST00000534556 SHANK2Q9UPX8 1470 aa7.95□□□□□ -1.14
USH1C-210ENST00000534556 GGT6Q6P531 493 aa7.95□□□□□ -1.14
USH1C-210ENST00000534556 CAMSAP1Q5T5Y3 1602 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms