RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 DDX27Q96GQ7 796 aaKnown RBP7.74□□□□□ -1.17
CSMD3-210ENST00000534172 LARP6Q9BRS8 491 aaKnown RBP7.74□□□□□ -1.17
CSMD3-210ENST00000534172 GPHNQ9NQX3 736 aaPredicted RBP7.74□□□□□ -1.17
CSMD3-210ENST00000534172 E2F4Q16254 413 aa7.73□□□□□ -1.17
CSMD3-210ENST00000534172 DPY19L2Q6NUT2 758 aa7.73□□□□□ -1.17
CSMD3-210ENST00000534172 NCKAP5LQ9HCH0 1330 aa7.72□□□□□ -1.17
CSMD3-210ENST00000534172 POTEIP0CG38 1075 aa7.72□□□□□ -1.17
CSMD3-210ENST00000534172 ARHGEF1Q92888 912 aaKnown RBP7.72□□□□□ -1.17
CSMD3-210ENST00000534172 C3orf67Q6ZVT6 689 aa7.7□□□□□ -1.18
CSMD3-210ENST00000534172 COLQQ9Y215 455 aaPredicted RBP7.7□□□□□ -1.18
CSMD3-210ENST00000534172 ARIH1Q9Y4X5 557 aaPredicted RBP7.7□□□□□ -1.18
CSMD3-210ENST00000534172 PPP1R15BQ5SWA1 713 aa7.69□□□□□ -1.18
CSMD3-210ENST00000534172 TULP1O00294 542 aaPredicted RBP7.68□□□□□ -1.18
CSMD3-210ENST00000534172 FOXK1P85037 733 aa7.68□□□□□ -1.18
CSMD3-210ENST00000534172 CAMK2BQ13554 666 aa7.67□□□□□ -1.18
CSMD3-210ENST00000534172 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.67□□□□□ -1.18
CSMD3-210ENST00000534172 MAMSTRQ6ZN01 415 aa7.66□□□□□ -1.18
CSMD3-210ENST00000534172 POTEFA5A3E0 1075 aa7.65□□□□□ -1.18
CSMD3-210ENST00000534172 KIF3CO14782 793 aa7.65□□□□□ -1.18
CSMD3-210ENST00000534172 KCNV2Q8TDN2 545 aa7.65□□□□□ -1.18
CSMD3-210ENST00000534172 C2orf72A6NCS6 295 aa7.62□□□□□ -1.19
CSMD3-210ENST00000534172 SPDYE16A6NNV3 312 aaPredicted RBP7.62□□□□□ -1.19
CSMD3-210ENST00000534172 SMYD5Q6GMV2 418 aa7.62□□□□□ -1.19
CSMD3-210ENST00000534172 DSG2Q14126 1118 aa7.62□□□□□ -1.19
CSMD3-210ENST00000534172 PLPP6Q8IY26 295 aa7.62□□□□□ -1.19
CSMD3-210ENST00000534172 TBC1D12O60347 775 aa7.61□□□□□ -1.19
CSMD3-210ENST00000534172 SCUBE2Q9NQ36 999 aa7.6□□□□□ -1.19
CSMD3-210ENST00000534172 ZNF316A6NFI3 1004 aaPredicted RBP7.58□□□□□ -1.2
CSMD3-210ENST00000534172 SLC34A2O95436 690 aa7.56□□□□□ -1.2
CSMD3-210ENST00000534172 MAP3K9P80192 1104 aa7.56□□□□□ -1.2
CSMD3-210ENST00000534172 TMEM92Q6UXU6 159 aa7.55□□□□□ -1.2
CSMD3-210ENST00000534172 TESPA1A2RU30 521 aaPredicted RBP7.54□□□□□ -1.2
CSMD3-210ENST00000534172 PDIA6Q15084 440 aa7.53□□□□□ -1.2
CSMD3-210ENST00000534172 OXER1Q8TDS5 423 aa7.53□□□□□ -1.2
CSMD3-210ENST00000534172 PTCD2Q8WV60 388 aaKnown RBP7.53□□□□□ -1.2
CSMD3-210ENST00000534172 RIMBP2O15034 1052 aa7.52□□□□□ -1.21
CSMD3-210ENST00000534172 SNPHO15079 494 aa7.52□□□□□ -1.21
CSMD3-210ENST00000534172 DOK7Q18PE1 504 aa7.52□□□□□ -1.21
CSMD3-210ENST00000534172 EMILIN3Q9NT22 766 aa7.52□□□□□ -1.21
CSMD3-210ENST00000534172 DPYSL4O14531 572 aa7.52□□□□□ -1.21
CSMD3-210ENST00000534172 ZSWIM6Q9HCJ5 1215 aa7.51□□□□□ -1.21
CSMD3-210ENST00000534172 SLAIN1Q8ND83 568 aa7.5□□□□□ -1.21
CSMD3-210ENST00000534172 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.49□□□□□ -1.21
CSMD3-210ENST00000534172 SEMA3EO15041 775 aa7.49□□□□□ -1.21
CSMD3-210ENST00000534172 PTGER2P43116 358 aa7.49□□□□□ -1.21
CSMD3-210ENST00000534172 LMOD2Q6P5Q4 547 aa7.47□□□□□ -1.21
CSMD3-210ENST00000534172 TPRNQ4KMQ1 711 aa7.46□□□□□ -1.21
CSMD3-210ENST00000534172 UPF1Q92900 1129 aaKnown RBP eCLIP7.46□□□□□ -1.21
CSMD3-210ENST00000534172 EVI5O60447 810 aa7.46□□□□□ -1.22
CSMD3-210ENST00000534172 POTEB2H3BUK9 544 aa7.45□□□□□ -1.22
CSMD3-210ENST00000534172 POTEJP0CG39 1038 aa7.45□□□□□ -1.22
CSMD3-210ENST00000534172 ANO8Q9HCE9 1232 aaPredicted RBP7.45□□□□□ -1.22
CSMD3-210ENST00000534172 PCDHGA4Q9Y5G9 962 aa7.44□□□□□ -1.22
CSMD3-210ENST00000534172 ZNF710Q8N1W2 664 aa7.44□□□□□ -1.22
CSMD3-210ENST00000534172 EPAS1Q99814 870 aa7.43□□□□□ -1.22
CSMD3-210ENST00000534172 PRKCSHP14314 528 aaPredicted RBP7.43□□□□□ -1.22
CSMD3-210ENST00000534172 LHX8Q68G74 356 aa7.42□□□□□ -1.22
CSMD3-210ENST00000534172 PSDA5PKW4 1024 aaPredicted RBP7.42□□□□□ -1.22
CSMD3-210ENST00000534172 PHF14O94880 888 aa7.4□□□□□ -1.22
CSMD3-210ENST00000534172 MLLT3P42568 568 aaPredicted RBP7.39□□□□□ -1.23
CSMD3-210ENST00000534172 FBXW7Q969H0 707 aa7.39□□□□□ -1.23
CSMD3-210ENST00000534172 HOXB3P14651 431 aaPredicted RBP7.39□□□□□ -1.23
CSMD3-210ENST00000534172 GPIHBP1Q8IV16 184 aa7.39□□□□□ -1.23
CSMD3-210ENST00000534172 GRXCR2A6NFK2 248 aa7.38□□□□□ -1.23
CSMD3-210ENST00000534172 JPH4Q96JJ6 628 aa7.38□□□□□ -1.23
CSMD3-210ENST00000534172 TYW1BQ6NUM6 668 aa7.37□□□□□ -1.23
CSMD3-210ENST00000534172 ZC3H15Q8WU90 426 aaKnown RBP7.36□□□□□ -1.23
CSMD3-210ENST00000534172 OTUD5Q96G74 571 aa7.36□□□□□ -1.23
CSMD3-210ENST00000534172 OSBPP22059 807 aa7.35□□□□□ -1.23
CSMD3-210ENST00000534172 GPR153Q6NV75 609 aa7.35□□□□□ -1.23
CSMD3-210ENST00000534172 DDX12PQ92771 950 aa7.35□□□□□ -1.23
CSMD3-210ENST00000534172 KDM4FA0A1W2PPD8 638 aa7.35□□□□□ -1.23
CSMD3-210ENST00000534172 ARSIQ5FYB1 569 aa7.35□□□□□ -1.23
CSMD3-210ENST00000534172 HOXB1P14653 301 aaPredicted RBP7.34□□□□□ -1.23
CSMD3-210ENST00000534172 FCHSD2O94868 740 aa7.34□□□□□ -1.24
CSMD3-210ENST00000534172 RBM26Q5T8P6 1007 aaKnown RBP7.34□□□□□ -1.24
CSMD3-210ENST00000534172 CERKQ8TCT0 537 aa7.34□□□□□ -1.24
CSMD3-210ENST00000534172 NUTM2FA1L443 756 aa7.33□□□□□ -1.24
CSMD3-210ENST00000534172 ZMYND10O75800 440 aa7.33□□□□□ -1.24
CSMD3-210ENST00000534172 FOSBP53539 338 aa7.33□□□□□ -1.24
CSMD3-210ENST00000534172 EN1Q05925 392 aaPredicted RBP7.33□□□□□ -1.24
CSMD3-210ENST00000534172 PPP4R3BQ5MIZ7 849 aa7.33□□□□□ -1.24
CSMD3-210ENST00000534172 NUDT7P0C024 238 aa7.32□□□□□ -1.24
CSMD3-210ENST00000534172 BARGINQ6ZT62 677 aa7.32□□□□□ -1.24
CSMD3-210ENST00000534172 ZDHHC16Q969W1 377 aa7.32□□□□□ -1.24
CSMD3-210ENST00000534172 HIC1Q14526 733 aa7.3□□□□□ -1.24
CSMD3-210ENST00000534172 PCDHGA10Q9Y5H3 936 aa7.3□□□□□ -1.24
CSMD3-210ENST00000534172 ZNF454Q8N9F8 522 aa7.3□□□□□ -1.24
CSMD3-210ENST00000534172 KRI1Q8N9T8 703 aaKnown RBP7.29□□□□□ -1.24
CSMD3-210ENST00000534172 MAP3K7O43318 606 aa7.29□□□□□ -1.24
CSMD3-210ENST00000534172 KCNH8Q96L42 1107 aa7.28□□□□□ -1.24
CSMD3-210ENST00000534172 DAXXQ9UER7 740 aaPredicted RBP7.28□□□□□ -1.24
CSMD3-210ENST00000534172 MINK1Q8N4C8 1332 aaPredicted RBP7.28□□□□□ -1.24
CSMD3-210ENST00000534172 GNPATO15228 680 aa7.27□□□□□ -1.24
CSMD3-210ENST00000534172 AK7Q96M32 723 aa7.27□□□□□ -1.24
CSMD3-210ENST00000534172 LHX6Q9UPM6 363 aa7.27□□□□□ -1.24
CSMD3-210ENST00000534172 PTGDRQ13258 359 aa7.26□□□□□ -1.25
CSMD3-210ENST00000534172 KHSRPQ92945 711 aaKnown RBP eCLIP7.26□□□□□ -1.25
CSMD3-210ENST00000534172 RBM27Q9P2N5 1060 aaKnown RBP7.26□□□□□ -1.25
CSMD3-210ENST00000534172 MAP2K5Q13163 448 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms