RNA–Protein interactions for RNA: ENST00000525209.5

CD44-213, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 574 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-213ENST00000525209 ZNF467Q7Z7K2 595 aaPredicted RBP7.2□□□□□ -1.26
CD44-213ENST00000525209 GTPBP6O43824 516 aaPredicted RBP7.19□□□□□ -1.26
CD44-213ENST00000525209 IER5LQ5T953 404 aa7.19□□□□□ -1.26
CD44-213ENST00000525209 PSEN1P49768 467 aa7.18□□□□□ -1.26
CD44-213ENST00000525209 ZC3H15Q8WU90 426 aaKnown RBP7.18□□□□□ -1.26
CD44-213ENST00000525209 PLCG2P16885 1265 aa7.17□□□□□ -1.26
CD44-213ENST00000525209 IRX5P78411 483 aaPredicted RBP7.17□□□□□ -1.26
CD44-213ENST00000525209 NKX1-1Q15270 411 aaPredicted RBP7.17□□□□□ -1.26
CD44-213ENST00000525209 SLC24A3Q9HC58 644 aa7.17□□□□□ -1.26
CD44-213ENST00000525209 SCUBE2Q9NQ36 999 aa7.17□□□□□ -1.26
CD44-213ENST00000525209 MAMSTRQ6ZN01 415 aa7.16□□□□□ -1.26
CD44-213ENST00000525209 HSP90B1P14625 803 aaKnown RBP7.14□□□□□ -1.27
CD44-213ENST00000525209 CDK11BP21127 795 aaKnown RBP7.14□□□□□ -1.27
CD44-213ENST00000525209 PDAP1Q13442 181 aaKnown RBP7.14□□□□□ -1.27
CD44-213ENST00000525209 CDK11AQ9UQ88 783 aaPredicted RBP7.14□□□□□ -1.27
CD44-213ENST00000525209 GOLGA2Q08379 1002 aa7.13□□□□□ -1.27
CD44-213ENST00000525209 OCEL1Q9H607 264 aa7.13□□□□□ -1.27
CD44-213ENST00000525209 APBB1O00213 710 aa7.12□□□□□ -1.27
CD44-213ENST00000525209 KCTD17Q8N5Z5 321 aa7.12□□□□□ -1.27
CD44-213ENST00000525209 CABP2Q9NPB3 220 aa7.12□□□□□ -1.27
CD44-213ENST00000525209 ARID3CA6NKF2 412 aa7.11□□□□□ -1.27
CD44-213ENST00000525209 MKRN3Q13064 507 aaKnown RBP7.11□□□□□ -1.27
CD44-213ENST00000525209 RNF25Q96BH1 459 aaPredicted RBP7.11□□□□□ -1.27
CD44-213ENST00000525209 RAD21O60216 631 aa7.1□□□□□ -1.27
CD44-213ENST00000525209 PDCD7Q8N8D1 485 aaKnown RBP7.1□□□□□ -1.27
CD44-213ENST00000525209 RGS22Q8NE09 1264 aa7.1□□□□□ -1.27
CD44-213ENST00000525209 KCNV2Q8TDN2 545 aa7.09□□□□□ -1.27
CD44-213ENST00000525209 TRIM41Q8WV44 630 aa7.09□□□□□ -1.27
CD44-213ENST00000525209 FAM163AQ96GL9 167 aaPredicted RBP7.09□□□□□ -1.27
CD44-213ENST00000525209 PUS7Q96PZ0 661 aaKnown RBP7.09□□□□□ -1.27
CD44-213ENST00000525209 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.09□□□□□ -1.27
CD44-213ENST00000525209 SLAIN1Q8ND83 568 aa7.08□□□□□ -1.28
CD44-213ENST00000525209 LCE2DQ5TA82 110 aaPredicted RBP7.07□□□□□ -1.28
CD44-213ENST00000525209 DPY19L2Q6NUT2 758 aa7.07□□□□□ -1.28
CD44-213ENST00000525209 RIOK3O14730 519 aaKnown RBP7.06□□□□□ -1.28
CD44-213ENST00000525209 TRAIPQ9BWF2 469 aa7.06□□□□□ -1.28
CD44-213ENST00000525209 POTEMA6NI47 508 aa7.05□□□□□ -1.28
CD44-213ENST00000525209 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.04□□□□□ -1.28
CD44-213ENST00000525209 POTEGQ6S5H5 508 aa7.04□□□□□ -1.28
CD44-213ENST00000525209 EFCAB3Q8N7B9 438 aa7.04□□□□□ -1.28
CD44-213ENST00000525209 ZFP91Q96JP5 570 aaPredicted RBP7.04□□□□□ -1.28
CD44-213ENST00000525209 ZMYND10O75800 440 aa7.03□□□□□ -1.28
CD44-213ENST00000525209 IL27Q8NEV9 243 aa7.03□□□□□ -1.28
CD44-213ENST00000525209 MTMR7Q9Y216 660 aa7.03□□□□□ -1.28
CD44-213ENST00000525209 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.02□□□□□ -1.29
CD44-213ENST00000525209 ILDR1Q86SU0 546 aaPredicted RBP7.01□□□□□ -1.29
CD44-213ENST00000525209 CHMP4AQ9BY43 222 aa7.01□□□□□ -1.29
CD44-213ENST00000525209 WDR70Q9NW82 654 aa7.01□□□□□ -1.29
CD44-213ENST00000525209 VGFO15240 615 aaPredicted RBP7□□□□□ -1.29
CD44-213ENST00000525209 C3orf67Q6ZVT6 689 aa7□□□□□ -1.29
CD44-213ENST00000525209 CCDC82Q8N4S0 544 aa7□□□□□ -1.29
CD44-213ENST00000525209 L3MBTL3Q96JM7 780 aaPredicted RBP7□□□□□ -1.29
CD44-213ENST00000525209 TMCO4Q5TGY1 634 aa6.99□□□□□ -1.29
CD44-213ENST00000525209 GPBP1L1Q9HC44 474 aaPredicted RBP6.99□□□□□ -1.29
CD44-213ENST00000525209 RBM25P49756 843 aaKnown RBP6.98□□□□□ -1.29
CD44-213ENST00000525209 RYDENQ9NUL5 291 aaKnown RBP6.98□□□□□ -1.29
CD44-213ENST00000525209 ST18O60284 1047 aa6.97□□□□□ -1.29
CD44-213ENST00000525209 BCL11BQ9C0K0 894 aaPredicted RBP6.97□□□□□ -1.29
CD44-213ENST00000525209 BOLA1Q9Y3E2 137 aa6.97□□□□□ -1.29
CD44-213ENST00000525209 MFAP1P55081 439 aaKnown RBP6.96□□□□□ -1.3
CD44-213ENST00000525209 FLIIQ13045 1269 aa6.96□□□□□ -1.3
CD44-213ENST00000525209 BARGINQ6ZT62 677 aa6.96□□□□□ -1.3
CD44-213ENST00000525209 AEBP1Q8IUX7 1158 aa6.96□□□□□ -1.3
CD44-213ENST00000525209 PLSCR2Q9NRY7 297 aa6.96□□□□□ -1.3
CD44-213ENST00000525209 PHF8Q9UPP1 1060 aa6.96□□□□□ -1.3
CD44-213ENST00000525209 TESPA1A2RU30 521 aaPredicted RBP6.95□□□□□ -1.3
CD44-213ENST00000525209 FOXD4L5Q5VV16 416 aaPredicted RBP6.95□□□□□ -1.3
CD44-213ENST00000525209 FOXD4L4Q8WXT5 416 aaPredicted RBP6.95□□□□□ -1.3
CD44-213ENST00000525209 ZNF428Q96B54 188 aa6.95□□□□□ -1.3
CD44-213ENST00000525209 MS4A4AQ96JQ5 239 aa6.95□□□□□ -1.3
CD44-213ENST00000525209 STK24Q9Y6E0 443 aa6.95□□□□□ -1.3
CD44-213ENST00000525209 G3V3G9 751 aa6.94□□□□□ -1.3
CD44-213ENST00000525209 STK25O00506 426 aa6.94□□□□□ -1.3
CD44-213ENST00000525209 ARHGEF1Q92888 912 aaKnown RBP6.94□□□□□ -1.3
CD44-213ENST00000525209 AK7Q96M32 723 aa6.94□□□□□ -1.3
CD44-213ENST00000525209 KDM4CQ9H3R0 1056 aa6.94□□□□□ -1.3
CD44-213ENST00000525209 A6NJR5 290 aa6.93□□□□□ -1.3
CD44-213ENST00000525209 E9PSI1 815 aa6.93□□□□□ -1.3
CD44-213ENST00000525209 TRAK2O60296 914 aa6.93□□□□□ -1.3
CD44-213ENST00000525209 SOX12O15370 315 aa6.92□□□□□ -1.3
CD44-213ENST00000525209 MARVELD3Q96A59 401 aa6.91□□□□□ -1.3
CD44-213ENST00000525209 GZF1Q9H116 711 aaPredicted RBP6.91□□□□□ -1.3
CD44-213ENST00000525209 SEMA3EO15041 775 aa6.9□□□□□ -1.3
CD44-213ENST00000525209 CADPS2Q86UW7 1296 aa6.9□□□□□ -1.3
CD44-213ENST00000525209 MICALL2Q8IY33 904 aa6.9□□□□□ -1.3
CD44-213ENST00000525209 TMEM121BQ9BXQ6 578 aaPredicted RBP6.89□□□□□ -1.31
CD44-213ENST00000525209 MFRPQ9BY79 579 aa6.89□□□□□ -1.31
CD44-213ENST00000525209 SNPHO15079 494 aa6.88□□□□□ -1.31
CD44-213ENST00000525209 TMEM92Q6UXU6 159 aa6.88□□□□□ -1.31
CD44-213ENST00000525209 FBXO22Q8NEZ5 403 aa6.88□□□□□ -1.31
CD44-213ENST00000525209 ONECUT3O60422 494 aaPredicted RBP6.87□□□□□ -1.31
CD44-213ENST00000525209 NLRP6P59044 892 aa6.86□□□□□ -1.31
CD44-213ENST00000525209 CDAN1Q8IWY9 1227 aa6.86□□□□□ -1.31
CD44-213ENST00000525209 HOXB3P14651 431 aaPredicted RBP6.85□□□□□ -1.31
CD44-213ENST00000525209 SMYD5Q6GMV2 418 aa6.85□□□□□ -1.31
CD44-213ENST00000525209 PDE4DQ08499 809 aa6.84□□□□□ -1.31
CD44-213ENST00000525209 RSPH4AQ5TD94 716 aa6.84□□□□□ -1.31
CD44-213ENST00000525209 CLUAP1Q96AJ1 413 aa6.84□□□□□ -1.31
CD44-213ENST00000525209 USP35Q9P2H5 1018 aa6.84□□□□□ -1.31
CD44-213ENST00000525209 ZNF316A6NFI3 1004 aaPredicted RBP6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms