RNA–Protein interactions for RNA: ENST00000524288.1

SKP1-213, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-213ENST00000524288 RIMBP2O15034 1052 aa14.28□□□□□ -0.12
SKP1-213ENST00000524288 DCAF8L2P0C7V8 631 aa14.28□□□□□ -0.12
SKP1-213ENST00000524288 NKX1-1Q15270 411 aaPredicted RBP14.28□□□□□ -0.12
SKP1-213ENST00000524288 PPP1R37O75864 691 aa14.27□□□□□ -0.13
SKP1-213ENST00000524288 ZNF710Q8N1W2 664 aa14.26□□□□□ -0.13
SKP1-213ENST00000524288 KIF3CO14782 793 aa14.24□□□□□ -0.13
SKP1-213ENST00000524288 ZSWIM6Q9HCJ5 1215 aa14.24□□□□□ -0.13
SKP1-213ENST00000524288 EMP3P54852 163 aa14.21□□□□□ -0.13
SKP1-213ENST00000524288 HOXB1P14653 301 aaPredicted RBP14.2□□□□□ -0.14
SKP1-213ENST00000524288 TMC2Q8TDI7 906 aa14.2□□□□□ -0.14
SKP1-213ENST00000524288 MARVELD3Q96A59 401 aa14.2□□□□□ -0.14
SKP1-213ENST00000524288 C2orf72A6NCS6 295 aa14.19□□□□□ -0.14
SKP1-213ENST00000524288 CDAN1Q8IWY9 1227 aa14.17□□□□□ -0.14
SKP1-213ENST00000524288 GTPBP6O43824 516 aaPredicted RBP14.12□□□□□ -0.15
SKP1-213ENST00000524288 GPR153Q6NV75 609 aa14.1□□□□□ -0.15
SKP1-213ENST00000524288 SLC34A2O95436 690 aa14.09□□□□□ -0.15
SKP1-213ENST00000524288 GPHNQ9NQX3 736 aaPredicted RBP14.08□□□□□ -0.16
SKP1-213ENST00000524288 FAM205CA6NFA0 338 aa14.07□□□□□ -0.16
SKP1-213ENST00000524288 HS3ST6Q96QI5 342 aa14.07□□□□□ -0.16
SKP1-213ENST00000524288 FOXK1P85037 733 aa14.06□□□□□ -0.16
SKP1-213ENST00000524288 BBXQ8WY36 941 aaPredicted RBP14.03□□□□□ -0.16
SKP1-213ENST00000524288 PLSCR2Q9NRY7 297 aa14.03□□□□□ -0.16
SKP1-213ENST00000524288 ERBB3P21860 1342 aa14.03□□□□□ -0.16
SKP1-213ENST00000524288 ARSIQ5FYB1 569 aa14.01□□□□□ -0.17
SKP1-213ENST00000524288 CRISPLD2Q9H0B8 497 aa14□□□□□ -0.17
SKP1-213ENST00000524288 POTEB3A0JP26 581 aa13.99□□□□□ -0.17
SKP1-213ENST00000524288 POTEBQ6S5H4 581 aa13.99□□□□□ -0.17
SKP1-213ENST00000524288 PLPP6Q8IY26 295 aa13.98□□□□□ -0.17
SKP1-213ENST00000524288 DSG2Q14126 1118 aa13.97□□□□□ -0.17
SKP1-213ENST00000524288 PCDHGA4Q9Y5G9 962 aa13.96□□□□□ -0.17
SKP1-213ENST00000524288 PDE4AP27815 886 aa13.95□□□□□ -0.18
SKP1-213ENST00000524288 VARS2Q5ST30 1063 aaKnown RBP13.95□□□□□ -0.18
SKP1-213ENST00000524288 PTCD2Q8WV60 388 aaKnown RBP13.95□□□□□ -0.18
SKP1-213ENST00000524288 ZNF316A6NFI3 1004 aaPredicted RBP13.92□□□□□ -0.18
SKP1-213ENST00000524288 KHSRPQ92945 711 aaKnown RBP eCLIP13.92□□□□□ -0.181e-7■■■□□ 17.8
SKP1-213ENST00000524288 NCKAP5LQ9HCH0 1330 aa13.91□□□□□ -0.18
SKP1-213ENST00000524288 PLCB2Q00722 1185 aa13.91□□□□□ -0.18
SKP1-213ENST00000524288 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.91□□□□□ -0.18
SKP1-213ENST00000524288 TBC1D12O60347 775 aa13.89□□□□□ -0.19
SKP1-213ENST00000524288 NUDT7P0C024 238 aa13.89□□□□□ -0.19
SKP1-213ENST00000524288 PPP1R15BQ5SWA1 713 aa13.89□□□□□ -0.19
SKP1-213ENST00000524288 ZNF687Q8N1G0 1237 aa13.89□□□□□ -0.19
SKP1-213ENST00000524288 KRTAP3-3Q9BYR6 98 aa13.89□□□□□ -0.19
SKP1-213ENST00000524288 KRTAP3-2Q9BYR7 98 aa13.89□□□□□ -0.19
SKP1-213ENST00000524288 SPRYD3Q8NCJ5 442 aa13.85□□□□□ -0.19
SKP1-213ENST00000524288 PSDA5PKW4 1024 aaPredicted RBP13.84□□□□□ -0.19
SKP1-213ENST00000524288 MFSD10Q14728 455 aa13.84□□□□□ -0.19
SKP1-213ENST00000524288 DDX27Q96GQ7 796 aaKnown RBP13.84□□□□□ -0.19
SKP1-213ENST00000524288 LARP6Q9BRS8 491 aaKnown RBP13.84□□□□□ -0.19
SKP1-213ENST00000524288 KDM4FA0A1W2PPD8 638 aa13.82□□□□□ -0.2
SKP1-213ENST00000524288 LHX6Q9UPM6 363 aa13.82□□□□□ -0.2
SKP1-213ENST00000524288 HAP1P54257 671 aaPredicted RBP13.81□□□□□ -0.2
SKP1-213ENST00000524288 SPNS2Q8IVW8 549 aa13.81□□□□□ -0.2
SKP1-213ENST00000524288 OXER1Q8TDS5 423 aa13.81□□□□□ -0.2
SKP1-213ENST00000524288 CADPS2Q86UW7 1296 aa13.78□□□□□ -0.2
SKP1-213ENST00000524288 PBX2P40425 430 aa13.76□□□□□ -0.21
SKP1-213ENST00000524288 UPF1Q92900 1129 aaKnown RBP eCLIP13.74□□□□□ -0.21
SKP1-213ENST00000524288 MMRN1Q13201 1228 aa13.72□□□□□ -0.21
SKP1-213ENST00000524288 PAXIP1Q6ZW49 1069 aaPredicted RBP13.72□□□□□ -0.21
SKP1-213ENST00000524288 PPP4R3BQ5MIZ7 849 aa13.69□□□□□ -0.22
SKP1-213ENST00000524288 CFAP44Q96MT7 982 aa13.69□□□□□ -0.22
SKP1-213ENST00000524288 PTGER2P43116 358 aa13.66□□□□□ -0.22
SKP1-213ENST00000524288 LSM11P83369 360 aaKnown RBP eCLIP13.66□□□□□ -0.22
SKP1-213ENST00000524288 MAP3K9P80192 1104 aa13.65□□□□□ -0.22
SKP1-213ENST00000524288 CAMK2BQ13554 666 aa13.65□□□□□ -0.22
SKP1-213ENST00000524288 ANO8Q9HCE9 1232 aaPredicted RBP13.65□□□□□ -0.22
SKP1-213ENST00000524288 EVI5O60447 810 aa13.63□□□□□ -0.23
SKP1-213ENST00000524288 EMILIN3Q9NT22 766 aa13.63□□□□□ -0.23
SKP1-213ENST00000524288 ARHGAP33O14559 1287 aa13.62□□□□□ -0.23
SKP1-213ENST00000524288 POTEEQ6S8J3 1075 aa13.61□□□□□ -0.23
SKP1-213ENST00000524288 ANKRD13DQ6ZTN6 518 aa13.59□□□□□ -0.23
SKP1-213ENST00000524288 JPH4Q96JJ6 628 aa13.58□□□□□ -0.24
SKP1-213ENST00000524288 KCNH8Q96L42 1107 aa13.58□□□□□ -0.24
SKP1-213ENST00000524288 FOSBP53539 338 aa13.57□□□□□ -0.24
SKP1-213ENST00000524288 ZNF454Q8N9F8 522 aa13.57□□□□□ -0.24
SKP1-213ENST00000524288 AXIN2Q9Y2T1 843 aa13.57□□□□□ -0.24
SKP1-213ENST00000524288 MYT1LQ9UL68 1186 aa13.55□□□□□ -0.24
SKP1-213ENST00000524288 BCL2L12Q9HB09 334 aa13.54□□□□□ -0.24
SKP1-213ENST00000524288 TK2O00142 265 aa13.53□□□□□ -0.24
SKP1-213ENST00000524288 WDR70Q9NW82 654 aa13.52□□□□□ -0.25
SKP1-213ENST00000524288 RNF166Q96A37 237 aaPredicted RBP13.51□□□□□ -0.25
SKP1-213ENST00000524288 DPYSL4O14531 572 aa13.49□□□□□ -0.25
SKP1-213ENST00000524288 PSEN2P49810 448 aa13.49□□□□□ -0.25
SKP1-213ENST00000524288 ADGRD1Q6QNK2 874 aa13.49□□□□□ -0.25
SKP1-213ENST00000524288 ZDHHC16Q969W1 377 aa13.49□□□□□ -0.25
SKP1-213ENST00000524288 KCNK17Q96T54 332 aa13.49□□□□□ -0.25
SKP1-213ENST00000524288 E2F4Q16254 413 aa13.48□□□□□ -0.25
SKP1-213ENST00000524288 DMRTA1Q5VZB9 504 aa13.47□□□□□ -0.25
SKP1-213ENST00000524288 PTPREP23469 700 aa13.46□□□□□ -0.25
SKP1-213ENST00000524288 VSIG10Q8N0Z9 540 aa13.46□□□□□ -0.25
SKP1-213ENST00000524288 PHF14O94880 888 aa13.45□□□□□ -0.26
SKP1-213ENST00000524288 FBXW7Q969H0 707 aa13.45□□□□□ -0.26
SKP1-213ENST00000524288 ARIH1Q9Y4X5 557 aaPredicted RBP13.45□□□□□ -0.26
SKP1-213ENST00000524288 SLC4A5Q9BY07 1137 aa13.44□□□□□ -0.26
SKP1-213ENST00000524288 SPDYE16A6NNV3 312 aaPredicted RBP13.43□□□□□ -0.26
SKP1-213ENST00000524288 PCDHGA10Q9Y5H3 936 aa13.43□□□□□ -0.26
SKP1-213ENST00000524288 PDIA6Q15084 440 aa13.42□□□□□ -0.26
SKP1-213ENST00000524288 TYW1BQ6NUM6 668 aa13.42□□□□□ -0.26
SKP1-213ENST00000524288 EPAS1Q99814 870 aa13.42□□□□□ -0.26
SKP1-213ENST00000524288 HRO43593 1189 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms