RNA–Protein interactions for RNA: ENST00000520493.1

SQLE-204, Transcript of squalene epoxidase, humanhuman

TSL 3

Gene SQLE, Length 737 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQLE-204ENST00000520493 KHSRPQ92945 711 aaKnown RBP eCLIP11.74□□□□□ -0.532e-11■■■■□ 22.8
SQLE-204ENST00000520493 CIZ1Q9ULV3 898 aaPredicted RBP11.74□□□□□ -0.53
SQLE-204ENST00000520493 ZNF316A6NFI3 1004 aaPredicted RBP11.73□□□□□ -0.53
SQLE-204ENST00000520493 HCSTQ9UBK5 93 aa11.69□□□□□ -0.54
SQLE-204ENST00000520493 AXIN2Q9Y2T1 843 aa11.64□□□□□ -0.55
SQLE-204ENST00000520493 TRIM41Q8WV44 630 aa11.62□□□□□ -0.55
SQLE-204ENST00000520493 PBX2P40425 430 aa11.6□□□□□ -0.55
SQLE-204ENST00000520493 POTEEQ6S8J3 1075 aa11.57□□□□□ -0.56
SQLE-204ENST00000520493 MS4A4AQ96JQ5 239 aa11.57□□□□□ -0.56
SQLE-204ENST00000520493 NUDT7P0C024 238 aa11.56□□□□□ -0.56
SQLE-204ENST00000520493 SOX12O15370 315 aa11.54□□□□□ -0.56
SQLE-204ENST00000520493 PHF8Q9UPP1 1060 aa11.53□□□□□ -0.56
SQLE-204ENST00000520493 LHX6Q9UPM6 363 aa11.52□□□□□ -0.57
SQLE-204ENST00000520493 ADGRD1Q6QNK2 874 aa11.5□□□□□ -0.57
SQLE-204ENST00000520493 KCTD12Q96CX2 325 aaKnown RBP11.44□□□□□ -0.58
SQLE-204ENST00000520493 IRX2Q9BZI1 471 aaPredicted RBP11.44□□□□□ -0.58
SQLE-204ENST00000520493 ARHGAP33O14559 1287 aa11.43□□□□□ -0.58
SQLE-204ENST00000520493 ECM2O94769 699 aaPredicted RBP11.41□□□□□ -0.58
SQLE-204ENST00000520493 PCDHGA4Q9Y5G9 962 aa11.41□□□□□ -0.58
SQLE-204ENST00000520493 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.4□□□□□ -0.58
SQLE-204ENST00000520493 ZFP91Q96JP5 570 aaPredicted RBP11.4□□□□□ -0.58
SQLE-204ENST00000520493 C2orf72A6NCS6 295 aa11.39□□□□□ -0.59
SQLE-204ENST00000520493 RIOK3O14730 519 aaKnown RBP11.39□□□□□ -0.59
SQLE-204ENST00000520493 TAOK2Q9UL54 1235 aa11.39□□□□□ -0.59
SQLE-204ENST00000520493 STAC3Q96MF2 364 aa11.37□□□□□ -0.59
SQLE-204ENST00000520493 DMRTA1Q5VZB9 504 aa11.36□□□□□ -0.59
SQLE-204ENST00000520493 HRO43593 1189 aa11.35□□□□□ -0.59
SQLE-204ENST00000520493 NLRP6P59044 892 aa11.35□□□□□ -0.59
SQLE-204ENST00000520493 PKD2Q13563 968 aa11.35□□□□□ -0.59
SQLE-204ENST00000520493 TK2O00142 265 aa11.34□□□□□ -0.59
SQLE-204ENST00000520493 KIF3CO14782 793 aa11.34□□□□□ -0.59
SQLE-204ENST00000520493 PSEN2P49810 448 aa11.34□□□□□ -0.59
SQLE-204ENST00000520493 VGFO15240 615 aaPredicted RBP11.33□□□□□ -0.6
SQLE-204ENST00000520493 RGS20O76081 388 aa11.33□□□□□ -0.6
SQLE-204ENST00000520493 PTPN5P54829 565 aa11.33□□□□□ -0.6
SQLE-204ENST00000520493 SLC34A2O95436 690 aa11.31□□□□□ -0.6
SQLE-204ENST00000520493 RNF25Q96BH1 459 aaPredicted RBP11.31□□□□□ -0.6
SQLE-204ENST00000520493 PSDA5PKW4 1024 aaPredicted RBP11.29□□□□□ -0.6
SQLE-204ENST00000520493 FBXO22Q8NEZ5 403 aa11.29□□□□□ -0.6
SQLE-204ENST00000520493 RGL2O15211 777 aa11.24□□□□□ -0.61
SQLE-204ENST00000520493 TMC2Q8TDI7 906 aa11.24□□□□□ -0.61
SQLE-204ENST00000520493 A0A0G2JS52 829 aa11.22□□□□□ -0.61
SQLE-204ENST00000520493 IFFO2Q5TF58 517 aa11.2□□□□□ -0.62
SQLE-204ENST00000520493 STK25O00506 426 aa11.19□□□□□ -0.62
SQLE-204ENST00000520493 MFRPQ9BY79 579 aa11.19□□□□□ -0.62
SQLE-204ENST00000520493 BCL11BQ9C0K0 894 aaPredicted RBP11.19□□□□□ -0.62
SQLE-204ENST00000520493 PPP4R3BQ5MIZ7 849 aa11.18□□□□□ -0.62
SQLE-204ENST00000520493 Q6ZNB5 142 aa11.18□□□□□ -0.62
SQLE-204ENST00000520493 KCNK17Q96T54 332 aa11.17□□□□□ -0.62
SQLE-204ENST00000520493 STK24Q9Y6E0 443 aa11.17□□□□□ -0.62
SQLE-204ENST00000520493 KDM4FA0A1W2PPD8 638 aa11.16□□□□□ -0.62
SQLE-204ENST00000520493 KCNH8Q96L42 1107 aa11.15□□□□□ -0.62
SQLE-204ENST00000520493 VPS9D1Q9Y2B5 631 aa11.13□□□□□ -0.63
SQLE-204ENST00000520493 AMER1Q5JTC6 1135 aaPredicted RBP11.12□□□□□ -0.63
SQLE-204ENST00000520493 THSD4Q6ZMP0 1018 aa11.12□□□□□ -0.63
SQLE-204ENST00000520493 PTCD2Q8WV60 388 aaKnown RBP11.1□□□□□ -0.63
SQLE-204ENST00000520493 GOLGA8CPA6NN73 597 aa11.09□□□□□ -0.63
SQLE-204ENST00000520493 DCAF8L2P0C7V8 631 aa11.08□□□□□ -0.64
SQLE-204ENST00000520493 WNT2BQ93097 391 aa11.06□□□□□ -0.64
SQLE-204ENST00000520493 CHGAP10645 457 aaKnown RBP11.05□□□□□ -0.64
SQLE-204ENST00000520493 HS6ST3Q8IZP7 471 aa11.05□□□□□ -0.64
SQLE-204ENST00000520493 TBC1D12O60347 775 aa11.01□□□□□ -0.65
SQLE-204ENST00000520493 PLPP6Q8IY26 295 aa11.01□□□□□ -0.65
SQLE-204ENST00000520493 MRPL50Q8N5N7 158 aaKnown RBP10.99□□□□□ -0.65
SQLE-204ENST00000520493 BHMG1C9JSJ3 638 aaPredicted RBP10.98□□□□□ -0.65
SQLE-204ENST00000520493 PPP1R37O75864 691 aa10.97□□□□□ -0.65
SQLE-204ENST00000520493 ZNF454Q8N9F8 522 aa10.97□□□□□ -0.65
SQLE-204ENST00000520493 SLC4A5Q9BY07 1137 aa10.97□□□□□ -0.65
SQLE-204ENST00000520493 RTN4Q9NQC3 1192 aaKnown RBP10.97□□□□□ -0.65
SQLE-204ENST00000520493 FOXK1P85037 733 aa10.94□□□□□ -0.66
SQLE-204ENST00000520493 RYDENQ9NUL5 291 aaKnown RBP10.93□□□□□ -0.66
SQLE-204ENST00000520493 BCL2L12Q9HB09 334 aa10.92□□□□□ -0.66
SQLE-204ENST00000520493 PTPREP23469 700 aa10.91□□□□□ -0.66
SQLE-204ENST00000520493 TRAF7Q6Q0C0 670 aa10.91□□□□□ -0.66
SQLE-204ENST00000520493 ZBED2Q9BTP6 218 aa10.91□□□□□ -0.66
SQLE-204ENST00000520493 DNAJC5Q9H3Z4 198 aa10.91□□□□□ -0.66
SQLE-204ENST00000520493 LCE2BO14633 110 aa10.9□□□□□ -0.66
SQLE-204ENST00000520493 ITGBL1O95965 494 aaPredicted RBP10.89□□□□□ -0.67
SQLE-204ENST00000520493 DSG2Q14126 1118 aa10.89□□□□□ -0.67
SQLE-204ENST00000520493 NBPF3Q9H094 633 aa10.88□□□□□ -0.67
SQLE-204ENST00000520493 LAPTM4AQ15012 233 aa10.87□□□□□ -0.67
SQLE-204ENST00000520493 UPF1Q92900 1129 aaKnown RBP eCLIP10.87□□□□□ -0.67
SQLE-204ENST00000520493 GPHNQ9NQX3 736 aaPredicted RBP10.87□□□□□ -0.67
SQLE-204ENST00000520493 GFRA3O60609 400 aa10.86□□□□□ -0.67
SQLE-204ENST00000520493 NKX1-1Q15270 411 aaPredicted RBP10.82□□□□□ -0.68
SQLE-204ENST00000520493 ANKK1Q8NFD2 765 aa10.82□□□□□ -0.68
SQLE-204ENST00000520493 FOSBP53539 338 aa10.81□□□□□ -0.68
SQLE-204ENST00000520493 OXER1Q8TDS5 423 aa10.81□□□□□ -0.68
SQLE-204ENST00000520493 BCAMP50895 628 aa10.8□□□□□ -0.68
SQLE-204ENST00000520493 KCNC4Q03721 635 aa10.8□□□□□ -0.68
SQLE-204ENST00000520493 BBXQ8WY36 941 aaPredicted RBP10.76□□□□□ -0.69
SQLE-204ENST00000520493 ADAM33Q9BZ11 813 aa10.76□□□□□ -0.69
SQLE-204ENST00000520493 ZNF787Q6DD87 383 aa10.74□□□□□ -0.69
SQLE-204ENST00000520493 ZDHHC16Q969W1 377 aa10.74□□□□□ -0.69
SQLE-204ENST00000520493 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.73□□□□□ -0.69
SQLE-204ENST00000520493 SOWAHBA6NEL2 793 aa10.72□□□□□ -0.69
SQLE-204ENST00000520493 GTPBP6O43824 516 aaPredicted RBP10.72□□□□□ -0.69
SQLE-204ENST00000520493 PROX2Q3B8N5 592 aa10.72□□□□□ -0.69
SQLE-204ENST00000520493 JPH4Q96JJ6 628 aa10.72□□□□□ -0.69
SQLE-204ENST00000520493 WBP1LQ9NX94 342 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms