RNA–Protein interactions for RNA: ENST00000517391.5

CPNE3-202, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 785 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-202ENST00000517391 RGL2O15211 777 aa12.37□□□□□ -0.43
CPNE3-202ENST00000517391 VSIG10Q8N0Z9 540 aa12.36□□□□□ -0.43
CPNE3-202ENST00000517391 ZNF687Q8N1G0 1237 aa12.34□□□□□ -0.43
CPNE3-202ENST00000517391 PDAP1Q13442 181 aaKnown RBP12.32□□□□□ -0.44
CPNE3-202ENST00000517391 PAXIP1Q6ZW49 1069 aaPredicted RBP12.29□□□□□ -0.44
CPNE3-202ENST00000517391 ZSWIM6Q9HCJ5 1215 aa12.29□□□□□ -0.44
CPNE3-202ENST00000517391 CABP2Q9NPB3 220 aa12.27□□□□□ -0.45
CPNE3-202ENST00000517391 SPRYD3Q8NCJ5 442 aa12.25□□□□□ -0.45
CPNE3-202ENST00000517391 CFAP44Q96MT7 982 aa12.25□□□□□ -0.45
CPNE3-202ENST00000517391 CHGAP10645 457 aaKnown RBP12.22□□□□□ -0.45
CPNE3-202ENST00000517391 BCANQ96GW7 911 aa12.22□□□□□ -0.45
CPNE3-202ENST00000517391 ANKRD13DQ6ZTN6 518 aa12.19□□□□□ -0.46
CPNE3-202ENST00000517391 TAOK2Q9UL54 1235 aa12.19□□□□□ -0.46
CPNE3-202ENST00000517391 GPR153Q6NV75 609 aa12.18□□□□□ -0.46
CPNE3-202ENST00000517391 RNF25Q96BH1 459 aaPredicted RBP12.18□□□□□ -0.46
CPNE3-202ENST00000517391 RIOK3O14730 519 aaKnown RBP12.15□□□□□ -0.46
CPNE3-202ENST00000517391 HS6ST3Q8IZP7 471 aa12.15□□□□□ -0.46
CPNE3-202ENST00000517391 PLA2G2EQ9NZK7 142 aa12.12□□□□□ -0.47
CPNE3-202ENST00000517391 KDM2AQ9Y2K7 1162 aa12.12□□□□□ -0.47
CPNE3-202ENST00000517391 DNAJC5Q9H3Z4 198 aa12.1□□□□□ -0.47
CPNE3-202ENST00000517391 LSM11P83369 360 aaKnown RBP eCLIP12.09□□□□□ -0.47
CPNE3-202ENST00000517391 TMEM92Q6UXU6 159 aa12.07□□□□□ -0.48
CPNE3-202ENST00000517391 MICALL2Q8IY33 904 aa12.07□□□□□ -0.48
CPNE3-202ENST00000517391 TSHZ2Q9NRE2 1034 aa12.07□□□□□ -0.48
CPNE3-202ENST00000517391 VGFO15240 615 aaPredicted RBP12.06□□□□□ -0.48
CPNE3-202ENST00000517391 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.04□□□□□ -0.48
CPNE3-202ENST00000517391 ZNF316A6NFI3 1004 aaPredicted RBP12.04□□□□□ -0.48
CPNE3-202ENST00000517391 ARSIQ5FYB1 569 aa12.04□□□□□ -0.48
CPNE3-202ENST00000517391 ZFP91Q96JP5 570 aaPredicted RBP12.04□□□□□ -0.48
CPNE3-202ENST00000517391 HCSTQ9UBK5 93 aa12.04□□□□□ -0.48
CPNE3-202ENST00000517391 EFCAB3Q8N7B9 438 aa12.03□□□□□ -0.48
CPNE3-202ENST00000517391 PBX2P40425 430 aa12□□□□□ -0.49
CPNE3-202ENST00000517391 STK25O00506 426 aa11.96□□□□□ -0.49
CPNE3-202ENST00000517391 BCL11BQ9C0K0 894 aaPredicted RBP11.96□□□□□ -0.49
CPNE3-202ENST00000517391 STK24Q9Y6E0 443 aa11.95□□□□□ -0.5
CPNE3-202ENST00000517391 SOX12O15370 315 aa11.92□□□□□ -0.5
CPNE3-202ENST00000517391 KHSRPQ92945 711 aaKnown RBP eCLIP11.92□□□□□ -0.5
CPNE3-202ENST00000517391 NKX1-1Q15270 411 aaPredicted RBP11.91□□□□□ -0.5
CPNE3-202ENST00000517391 RYDENQ9NUL5 291 aaKnown RBP11.9□□□□□ -0.5
CPNE3-202ENST00000517391 GTPBP6O43824 516 aaPredicted RBP11.89□□□□□ -0.51
CPNE3-202ENST00000517391 MS4A4AQ96JQ5 239 aa11.85□□□□□ -0.51
CPNE3-202ENST00000517391 AXIN2Q9Y2T1 843 aa11.83□□□□□ -0.52
CPNE3-202ENST00000517391 PRKCSHP14314 528 aaPredicted RBP11.82□□□□□ -0.52
CPNE3-202ENST00000517391 POTEEQ6S8J3 1075 aa11.82□□□□□ -0.52
CPNE3-202ENST00000517391 NUDT7P0C024 238 aa11.81□□□□□ -0.52
CPNE3-202ENST00000517391 ADGRD1Q6QNK2 874 aa11.81□□□□□ -0.52
CPNE3-202ENST00000517391 PHF8Q9UPP1 1060 aa11.81□□□□□ -0.52
CPNE3-202ENST00000517391 LHX6Q9UPM6 363 aa11.79□□□□□ -0.52
CPNE3-202ENST00000517391 RGS20O76081 388 aa11.78□□□□□ -0.52
CPNE3-202ENST00000517391 NBR1Q14596 966 aa11.78□□□□□ -0.52
CPNE3-202ENST00000517391 TPRNQ4KMQ1 711 aa11.77□□□□□ -0.53
CPNE3-202ENST00000517391 ARHGAP33O14559 1287 aa11.76□□□□□ -0.53
CPNE3-202ENST00000517391 MFRPQ9BY79 579 aa11.76□□□□□ -0.53
CPNE3-202ENST00000517391 NLRP6P59044 892 aa11.75□□□□□ -0.53
CPNE3-202ENST00000517391 TK2O00142 265 aa11.73□□□□□ -0.53
CPNE3-202ENST00000517391 IRX2Q9BZI1 471 aaPredicted RBP11.73□□□□□ -0.53
CPNE3-202ENST00000517391 FBXO22Q8NEZ5 403 aa11.72□□□□□ -0.53
CPNE3-202ENST00000517391 PSDA5PKW4 1024 aaPredicted RBP11.71□□□□□ -0.53
CPNE3-202ENST00000517391 SLC34A2O95436 690 aa11.71□□□□□ -0.53
CPNE3-202ENST00000517391 PCDHGA4Q9Y5G9 962 aa11.71□□□□□ -0.53
CPNE3-202ENST00000517391 KIF3CO14782 793 aa11.68□□□□□ -0.54
CPNE3-202ENST00000517391 HRO43593 1189 aa11.68□□□□□ -0.54
CPNE3-202ENST00000517391 KCTD12Q96CX2 325 aaKnown RBP11.67□□□□□ -0.54
CPNE3-202ENST00000517391 C2orf72A6NCS6 295 aa11.66□□□□□ -0.54
CPNE3-202ENST00000517391 STAC3Q96MF2 364 aa11.66□□□□□ -0.54
CPNE3-202ENST00000517391 IFFO2Q5TF58 517 aa11.64□□□□□ -0.55
CPNE3-202ENST00000517391 PPP1R37O75864 691 aa11.61□□□□□ -0.55
CPNE3-202ENST00000517391 DMRTA1Q5VZB9 504 aa11.59□□□□□ -0.55
CPNE3-202ENST00000517391 P3H3Q8IVL6 736 aa11.59□□□□□ -0.55
CPNE3-202ENST00000517391 PSEN2P49810 448 aa11.57□□□□□ -0.56
CPNE3-202ENST00000517391 WDR70Q9NW82 654 aa11.57□□□□□ -0.56
CPNE3-202ENST00000517391 TMC2Q8TDI7 906 aa11.54□□□□□ -0.56
CPNE3-202ENST00000517391 A0A0G2JS52 829 aa11.53□□□□□ -0.56
CPNE3-202ENST00000517391 PTPN5P54829 565 aa11.53□□□□□ -0.56
CPNE3-202ENST00000517391 KDM4FA0A1W2PPD8 638 aa11.5□□□□□ -0.57
CPNE3-202ENST00000517391 PPP4R3BQ5MIZ7 849 aa11.5□□□□□ -0.57
CPNE3-202ENST00000517391 KCNH8Q96L42 1107 aa11.5□□□□□ -0.57
CPNE3-202ENST00000517391 CADPS2Q86UW7 1296 aa11.48□□□□□ -0.57
CPNE3-202ENST00000517391 PTCD2Q8WV60 388 aaKnown RBP11.45□□□□□ -0.58
CPNE3-202ENST00000517391 Q6ZNB5 142 aa11.43□□□□□ -0.58
CPNE3-202ENST00000517391 KCNK17Q96T54 332 aa11.42□□□□□ -0.58
CPNE3-202ENST00000517391 VPS9D1Q9Y2B5 631 aa11.42□□□□□ -0.58
CPNE3-202ENST00000517391 THSD4Q6ZMP0 1018 aa11.41□□□□□ -0.58
CPNE3-202ENST00000517391 KCNV2Q8TDN2 545 aa11.41□□□□□ -0.58
CPNE3-202ENST00000517391 ARHGEF1Q92888 912 aaKnown RBP11.37□□□□□ -0.59
CPNE3-202ENST00000517391 SLC4A5Q9BY07 1137 aa11.37□□□□□ -0.59
CPNE3-202ENST00000517391 GOLGA8CPA6NN73 597 aa11.36□□□□□ -0.59
CPNE3-202ENST00000517391 TBC1D12O60347 775 aa11.36□□□□□ -0.59
CPNE3-202ENST00000517391 TULP1O00294 542 aaPredicted RBP11.34□□□□□ -0.59
CPNE3-202ENST00000517391 E2F4Q16254 413 aa11.34□□□□□ -0.59
CPNE3-202ENST00000517391 WNT2BQ93097 391 aa11.33□□□□□ -0.6
CPNE3-202ENST00000517391 GPHNQ9NQX3 736 aaPredicted RBP11.32□□□□□ -0.6
CPNE3-202ENST00000517391 BHMG1C9JSJ3 638 aaPredicted RBP11.31□□□□□ -0.6
CPNE3-202ENST00000517391 PDE4AP27815 886 aa11.31□□□□□ -0.6
CPNE3-202ENST00000517391 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.31□□□□□ -0.6
CPNE3-202ENST00000517391 NCKAP5LQ9HCH0 1330 aa11.3□□□□□ -0.6
CPNE3-202ENST00000517391 FOXK1P85037 733 aa11.29□□□□□ -0.6
CPNE3-202ENST00000517391 CRISPLD2Q9H0B8 497 aa11.29□□□□□ -0.6
CPNE3-202ENST00000517391 LMOD2Q6P5Q4 547 aa11.28□□□□□ -0.6
CPNE3-202ENST00000517391 PLPP6Q8IY26 295 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms