RNA–Protein interactions for RNA: ENST00000515289.2

NPHP3-211, Transcript of nephrocystin 3, humanhuman

TSL 3

Gene NPHP3, Length 556 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-211ENST00000515289 ZBTB7CA1YPR0 619 aa11.69□□□□□ -0.54
NPHP3-211ENST00000515289 ZNF316A6NFI3 1004 aaPredicted RBP11.69□□□□□ -0.54
NPHP3-211ENST00000515289 ARID3CA6NKF2 412 aa11.69□□□□□ -0.54
NPHP3-211ENST00000515289 PDIA4P13667 645 aaKnown RBP11.69□□□□□ -0.54
NPHP3-211ENST00000515289 FAM117AQ9C073 453 aa11.69□□□□□ -0.54
NPHP3-211ENST00000515289 CCDC61Q9Y6R9 512 aa11.69□□□□□ -0.54
NPHP3-211ENST00000515289 CCDC9Q9Y3X0 531 aaKnown RBP11.68□□□□□ -0.54
NPHP3-211ENST00000515289 DDRGK1Q96HY6 314 aa11.67□□□□□ -0.54
NPHP3-211ENST00000515289 PLEKHG3A1L390 1219 aa11.64□□□□□ -0.55
NPHP3-211ENST00000515289 IFNL1Q8IU54 200 aa11.62□□□□□ -0.55
NPHP3-211ENST00000515289 MS4A4AQ96JQ5 239 aa11.61□□□□□ -0.55
NPHP3-211ENST00000515289 PITPNM1O00562 1244 aa11.6□□□□□ -0.55
NPHP3-211ENST00000515289 GPR37O15354 613 aa11.6□□□□□ -0.55
NPHP3-211ENST00000515289 ONECUT3O60422 494 aaPredicted RBP11.6□□□□□ -0.55
NPHP3-211ENST00000515289 A6NJR5 290 aa11.59□□□□□ -0.55
NPHP3-211ENST00000515289 GOPCQ9HD26 462 aa11.59□□□□□ -0.55
NPHP3-211ENST00000515289 MINK1Q8N4C8 1332 aaPredicted RBP11.59□□□□□ -0.55
NPHP3-211ENST00000515289 SPDYE16A6NNV3 312 aaPredicted RBP11.58□□□□□ -0.56
NPHP3-211ENST00000515289 FARP1Q9Y4F1 1045 aaPredicted RBP11.58□□□□□ -0.56
NPHP3-211ENST00000515289 PDIA6Q15084 440 aa11.56□□□□□ -0.56
NPHP3-211ENST00000515289 AMHR2Q16671 573 aa11.56□□□□□ -0.56
NPHP3-211ENST00000515289 TRAK2O60296 914 aa11.55□□□□□ -0.56
NPHP3-211ENST00000515289 CCDC82Q8N4S0 544 aa11.55□□□□□ -0.56
NPHP3-211ENST00000515289 MAP2K5Q13163 448 aa11.54□□□□□ -0.56
NPHP3-211ENST00000515289 PPP1R15BQ5SWA1 713 aa11.54□□□□□ -0.56
NPHP3-211ENST00000515289 NECTIN2Q92692 538 aa11.54□□□□□ -0.56
NPHP3-211ENST00000515289 CHADLQ6NUI6 762 aa11.52□□□□□ -0.57
NPHP3-211ENST00000515289 PARP9Q8IXQ6 854 aa11.52□□□□□ -0.57
NPHP3-211ENST00000515289 CCDC102AQ96A19 550 aa11.52□□□□□ -0.57
NPHP3-211ENST00000515289 DPYSL4O14531 572 aa11.51□□□□□ -0.57
NPHP3-211ENST00000515289 IRF6O14896 467 aa11.5□□□□□ -0.57
NPHP3-211ENST00000515289 MAP3K13O43283 966 aa11.5□□□□□ -0.57
NPHP3-211ENST00000515289 KIF12Q96FN5 646 aa11.49□□□□□ -0.57
NPHP3-211ENST00000515289 GPHNQ9NQX3 736 aaPredicted RBP11.49□□□□□ -0.57
NPHP3-211ENST00000515289 CLUAP1Q96AJ1 413 aa11.48□□□□□ -0.57
NPHP3-211ENST00000515289 EMILIN3Q9NT22 766 aa11.47□□□□□ -0.57
NPHP3-211ENST00000515289 PAK3O75914 559 aaPredicted RBP11.46□□□□□ -0.57
NPHP3-211ENST00000515289 TRAIPQ9BWF2 469 aa11.45□□□□□ -0.58
NPHP3-211ENST00000515289 PCMTD1Q96MG8 357 aaPredicted RBP11.44□□□□□ -0.58
NPHP3-211ENST00000515289 MCM6Q14566 821 aa11.42□□□□□ -0.58
NPHP3-211ENST00000515289 KCTD17Q8N5Z5 321 aa11.42□□□□□ -0.58
NPHP3-211ENST00000515289 GNPATO15228 680 aa11.41□□□□□ -0.58
NPHP3-211ENST00000515289 NUTM2FA1L443 756 aa11.4□□□□□ -0.58
NPHP3-211ENST00000515289 GOLGA2Q08379 1002 aa11.4□□□□□ -0.58
NPHP3-211ENST00000515289 TTLL12Q14166 644 aaPredicted RBP11.38□□□□□ -0.59
NPHP3-211ENST00000515289 HIC1Q14526 733 aa11.38□□□□□ -0.59
NPHP3-211ENST00000515289 PROSER2Q86WR7 435 aaPredicted RBP11.38□□□□□ -0.59
NPHP3-211ENST00000515289 SERPINA10Q9UK55 444 aa11.37□□□□□ -0.59
NPHP3-211ENST00000515289 DSG2Q14126 1118 aa11.36□□□□□ -0.59
NPHP3-211ENST00000515289 FCHSD2O94868 740 aa11.35□□□□□ -0.59
NPHP3-211ENST00000515289 SH3D19Q5HYK7 790 aa11.34□□□□□ -0.59
NPHP3-211ENST00000515289 GIGYF2Q6Y7W6 1299 aaKnown RBP11.34□□□□□ -0.59
NPHP3-211ENST00000515289 CCDC97Q96F63 343 aaPredicted RBP11.34□□□□□ -0.59
NPHP3-211ENST00000515289 GRXCR2A6NFK2 248 aa11.33□□□□□ -0.6
NPHP3-211ENST00000515289 MS4A1P11836 297 aa11.33□□□□□ -0.6
NPHP3-211ENST00000515289 FNBP4Q8N3X1 1017 aaPredicted RBP11.33□□□□□ -0.6
NPHP3-211ENST00000515289 ZNF777Q9ULD5 760 aaPredicted RBP11.33□□□□□ -0.6
NPHP3-211ENST00000515289 OSBPP22059 807 aa11.31□□□□□ -0.6
NPHP3-211ENST00000515289 FECHP22830 423 aa11.31□□□□□ -0.6
NPHP3-211ENST00000515289 FOXK1P85037 733 aa11.31□□□□□ -0.6
NPHP3-211ENST00000515289 PRKAR2AP13861 404 aaKnown RBP11.3□□□□□ -0.6
NPHP3-211ENST00000515289 ILDR1Q86SU0 546 aaPredicted RBP11.3□□□□□ -0.6
NPHP3-211ENST00000515289 TMEM106CQ9BVX2 250 aa11.3□□□□□ -0.6
NPHP3-211ENST00000515289 CCDC180Q9P1Z9 1646 aa11.28□□□□□ -0.6
NPHP3-211ENST00000515289 RAD21O60216 631 aa11.28□□□□□ -0.6
NPHP3-211ENST00000515289 AEBP1Q8IUX7 1158 aa11.26□□□□□ -0.61
NPHP3-211ENST00000515289 TMC2Q8TDI7 906 aa11.26□□□□□ -0.61
NPHP3-211ENST00000515289 OXER1Q8TDS5 423 aa11.26□□□□□ -0.61
NPHP3-211ENST00000515289 SKIV2LQ15477 1246 aaKnown RBP11.25□□□□□ -0.61
NPHP3-211ENST00000515289 POM121Q96HA1 1249 aa11.25□□□□□ -0.61
NPHP3-211ENST00000515289 PTGER2P43116 358 aa11.24□□□□□ -0.61
NPHP3-211ENST00000515289 RGS22Q8NE09 1264 aa11.24□□□□□ -0.61
NPHP3-211ENST00000515289 MAP3K9P80192 1104 aa11.23□□□□□ -0.61
NPHP3-211ENST00000515289 REPIN1Q9BWE0 567 aaKnown RBP11.23□□□□□ -0.61
NPHP3-211ENST00000515289 PTGDRQ13258 359 aa11.22□□□□□ -0.61
NPHP3-211ENST00000515289 TMUB1Q9BVT8 246 aa11.22□□□□□ -0.61
NPHP3-211ENST00000515289 PLSCR2Q9NRY7 297 aa11.22□□□□□ -0.61
NPHP3-211ENST00000515289 TMCO4Q5TGY1 634 aa11.21□□□□□ -0.61
NPHP3-211ENST00000515289 PLPP6Q8IY26 295 aa11.21□□□□□ -0.61
NPHP3-211ENST00000515289 RETREG2Q8NC44 543 aa11.21□□□□□ -0.61
NPHP3-211ENST00000515289 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.21□□□□□ -0.618e-7■■■□□ 19.2
NPHP3-211ENST00000515289 CLCN1P35523 988 aa11.2□□□□□ -0.62
NPHP3-211ENST00000515289 SPDYE5A6NIY4 337 aa11.19□□□□□ -0.62
NPHP3-211ENST00000515289 MICALL2Q8IY33 904 aa11.18□□□□□ -0.62
NPHP3-211ENST00000515289 FXR2P51116 673 aaKnown RBP eCLIP11.17□□□□□ -0.62
NPHP3-211ENST00000515289 GPCPD1Q9NPB8 672 aa11.17□□□□□ -0.62
NPHP3-211ENST00000515289 COG6Q9Y2V7 657 aa11.17□□□□□ -0.62
NPHP3-211ENST00000515289 ZRANB1Q9UGI0 708 aa11.16□□□□□ -0.62
NPHP3-211ENST00000515289 PHF12Q96QT6 1004 aa11.15□□□□□ -0.62
NPHP3-211ENST00000515289 MTMR7Q9Y216 660 aa11.15□□□□□ -0.62
NPHP3-211ENST00000515289 PPP1R15AO75807 674 aaPredicted RBP11.14□□□□□ -0.63
NPHP3-211ENST00000515289 MFAP1P55081 439 aaKnown RBP11.14□□□□□ -0.63
NPHP3-211ENST00000515289 DDX12PQ92771 950 aa11.14□□□□□ -0.63
NPHP3-211ENST00000515289 GZF1Q9H116 711 aaPredicted RBP11.14□□□□□ -0.63
NPHP3-211ENST00000515289 KIF3CO14782 793 aa11.13□□□□□ -0.63
NPHP3-211ENST00000515289 IRF5Q13568 498 aa11.13□□□□□ -0.63
NPHP3-211ENST00000515289 PROCA1Q8NCQ7 364 aaPredicted RBP11.13□□□□□ -0.63
NPHP3-211ENST00000515289 BANK1Q8NDB2 785 aa11.13□□□□□ -0.63
NPHP3-211ENST00000515289 SSTR3P32745 418 aaPredicted RBP11.12□□□□□ -0.63
NPHP3-211ENST00000515289 PRIM1P49642 420 aaKnown RBP11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms