RNA–Protein interactions for RNA: ENST00000514572.1

RFC1-216, Transcript of replication factor C subunit 1, humanhuman

TSL 2

Gene RFC1, Length 584 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-216ENST00000514572 TMEM106CQ9BVX2 250 aa10.43□□□□□ -0.74
RFC1-216ENST00000514572 TRPC6Q9Y210 931 aa10.43□□□□□ -0.74
RFC1-216ENST00000514572 SMYD5Q6GMV2 418 aa10.42□□□□□ -0.74
RFC1-216ENST00000514572 NEUROD2Q15784 382 aa10.4□□□□□ -0.74
RFC1-216ENST00000514572 BARGINQ6ZT62 677 aa10.4□□□□□ -0.74
RFC1-216ENST00000514572 BMP2KQ9NSY1 1161 aaPredicted RBP10.38□□□□□ -0.75
RFC1-216ENST00000514572 ATN1P54259 1190 aaPredicted RBP10.37□□□□□ -0.75
RFC1-216ENST00000514572 GOLGA2Q08379 1002 aa10.37□□□□□ -0.75
RFC1-216ENST00000514572 C14orf37Q86TY3 774 aa10.36□□□□□ -0.75
RFC1-216ENST00000514572 GPHNQ9NQX3 736 aaPredicted RBP10.36□□□□□ -0.75
RFC1-216ENST00000514572 POTEB2H3BUK9 544 aa10.35□□□□□ -0.75
RFC1-216ENST00000514572 TIE1P35590 1138 aa10.35□□□□□ -0.75
RFC1-216ENST00000514572 MKRN3Q13064 507 aaKnown RBP10.35□□□□□ -0.75
RFC1-216ENST00000514572 PPP1R15BQ5SWA1 713 aa10.35□□□□□ -0.75
RFC1-216ENST00000514572 C7P10643 843 aa10.34□□□□□ -0.75
RFC1-216ENST00000514572 MLLT3P42568 568 aaPredicted RBP10.34□□□□□ -0.75
RFC1-216ENST00000514572 SLC39A7Q92504 469 aa10.34□□□□□ -0.75
RFC1-216ENST00000514572 ARXQ96QS3 562 aa10.34□□□□□ -0.75
RFC1-216ENST00000514572 METRNQ9UJH8 293 aa10.34□□□□□ -0.75
RFC1-216ENST00000514572 TTLL13PA6NNM8 815 aa10.33□□□□□ -0.76
RFC1-216ENST00000514572 RBM26Q5T8P6 1007 aaKnown RBP10.31□□□□□ -0.76
RFC1-216ENST00000514572 EMILIN3Q9NT22 766 aa10.31□□□□□ -0.76
RFC1-216ENST00000514572 PDIA6Q15084 440 aa10.3□□□□□ -0.76
RFC1-216ENST00000514572 GPIHBP1Q8IV16 184 aa10.29□□□□□ -0.76
RFC1-216ENST00000514572 AK7Q96M32 723 aa10.28□□□□□ -0.76
RFC1-216ENST00000514572 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.28□□□□□ -0.765e-7■□□□□ 11.3
RFC1-216ENST00000514572 SPDYE16A6NNV3 312 aaPredicted RBP10.26□□□□□ -0.77
RFC1-216ENST00000514572 DPYSL4O14531 572 aa10.26□□□□□ -0.77
RFC1-216ENST00000514572 GPR37O15354 613 aa10.26□□□□□ -0.77
RFC1-216ENST00000514572 DSG2Q14126 1118 aa10.26□□□□□ -0.77
RFC1-216ENST00000514572 OTUD5Q96G74 571 aa10.26□□□□□ -0.77
RFC1-216ENST00000514572 FOXK1P85037 733 aa10.25□□□□□ -0.77
RFC1-216ENST00000514572 MICALL2Q8IY33 904 aa10.25□□□□□ -0.77
RFC1-216ENST00000514572 PDCD7Q8N8D1 485 aaKnown RBP10.24□□□□□ -0.77
RFC1-216ENST00000514572 TRIM35Q9UPQ4 493 aa10.24□□□□□ -0.77
RFC1-216ENST00000514572 POTEFA5A3E0 1075 aa10.23□□□□□ -0.77
RFC1-216ENST00000514572 POTEJP0CG39 1038 aa10.23□□□□□ -0.77
RFC1-216ENST00000514572 DPY19L2Q6NUT2 758 aa10.23□□□□□ -0.77
RFC1-216ENST00000514572 GPBP1L1Q9HC44 474 aaPredicted RBP10.22□□□□□ -0.77
RFC1-216ENST00000514572 TMEM121BQ9BXQ6 578 aaPredicted RBP10.21□□□□□ -0.77
RFC1-216ENST00000514572 KIF3CO14782 793 aa10.2□□□□□ -0.78
RFC1-216ENST00000514572 COLQQ9Y215 455 aaPredicted RBP10.2□□□□□ -0.78
RFC1-216ENST00000514572 TRIM66O15016 1216 aa10.19□□□□□ -0.78
RFC1-216ENST00000514572 SEC24BO95487 1268 aa10.18□□□□□ -0.78
RFC1-216ENST00000514572 IER5LQ5T953 404 aa10.18□□□□□ -0.78
RFC1-216ENST00000514572 KDM4CQ9H3R0 1056 aa10.18□□□□□ -0.78
RFC1-216ENST00000514572 DAXXQ9UER7 740 aaPredicted RBP10.18□□□□□ -0.78
RFC1-216ENST00000514572 IRX5P78411 483 aaPredicted RBP10.16□□□□□ -0.78
RFC1-216ENST00000514572 PDE4DQ08499 809 aa10.16□□□□□ -0.78
RFC1-216ENST00000514572 TMC2Q8TDI7 906 aa10.16□□□□□ -0.78
RFC1-216ENST00000514572 KRI1Q8N9T8 703 aaKnown RBP10.15□□□□□ -0.78
RFC1-216ENST00000514572 MAMSTRQ6ZN01 415 aa10.14□□□□□ -0.79
RFC1-216ENST00000514572 PLPP6Q8IY26 295 aa10.14□□□□□ -0.79
RFC1-216ENST00000514572 C2orf72A6NCS6 295 aa10.13□□□□□ -0.79
RFC1-216ENST00000514572 HOMEZQ8IX15 550 aa10.12□□□□□ -0.79
RFC1-216ENST00000514572 IL27Q8NEV9 243 aa10.1□□□□□ -0.79
RFC1-216ENST00000514572 SCUBE2Q9NQ36 999 aa10.1□□□□□ -0.79
RFC1-216ENST00000514572 BOLA1Q9Y3E2 137 aa10.1□□□□□ -0.79
RFC1-216ENST00000514572 MINK1Q8N4C8 1332 aaPredicted RBP10.09□□□□□ -0.79
RFC1-216ENST00000514572 PTGER2P43116 358 aa10.09□□□□□ -0.79
RFC1-216ENST00000514572 MAP2K5Q13163 448 aa10.09□□□□□ -0.79
RFC1-216ENST00000514572 OCEL1Q9H607 264 aa10.09□□□□□ -0.79
RFC1-216ENST00000514572 PLCG2P16885 1265 aa10.08□□□□□ -0.8
RFC1-216ENST00000514572 OSBPP22059 807 aa10.08□□□□□ -0.8
RFC1-216ENST00000514572 AMHR2Q16671 573 aa10.08□□□□□ -0.8
RFC1-216ENST00000514572 OXER1Q8TDS5 423 aa10.07□□□□□ -0.8
RFC1-216ENST00000514572 CCDC102AQ96A19 550 aa10.07□□□□□ -0.8
RFC1-216ENST00000514572 SUPT5HO00267 1087 aaKnown RBP10.05□□□□□ -0.8
RFC1-216ENST00000514572 IRF6O14896 467 aa10.05□□□□□ -0.8
RFC1-216ENST00000514572 TMEM92Q6UXU6 159 aa10.05□□□□□ -0.8
RFC1-216ENST00000514572 PLEKHG3A1L390 1219 aa10.04□□□□□ -0.8
RFC1-216ENST00000514572 FAM117AQ9C073 453 aa10.04□□□□□ -0.8
RFC1-216ENST00000514572 GRXCR2A6NFK2 248 aa10.03□□□□□ -0.8
RFC1-216ENST00000514572 MAP3K9P80192 1104 aa10.03□□□□□ -0.8
RFC1-216ENST00000514572 GNPATO15228 680 aa10.02□□□□□ -0.81
RFC1-216ENST00000514572 PARP9Q8IXQ6 854 aa10.02□□□□□ -0.81
RFC1-216ENST00000514572 NUTM2FA1L443 756 aa10.01□□□□□ -0.81
RFC1-216ENST00000514572 PRIM1P49642 420 aaKnown RBP10.01□□□□□ -0.81
RFC1-216ENST00000514572 HIC1Q14526 733 aa10.01□□□□□ -0.81
RFC1-216ENST00000514572 FCHSD2O94868 740 aa9.99□□□□□ -0.81
RFC1-216ENST00000514572 FECHP22830 423 aa9.99□□□□□ -0.81
RFC1-216ENST00000514572 UPF1Q92900 1129 aaKnown RBP eCLIP9.99□□□□□ -0.81
RFC1-216ENST00000514572 DDRGK1Q96HY6 314 aa9.99□□□□□ -0.81
RFC1-216ENST00000514572 ZMYND15Q9H091 742 aa9.98□□□□□ -0.81
RFC1-216ENST00000514572 PTGDRQ13258 359 aa9.97□□□□□ -0.81
RFC1-216ENST00000514572 L3MBTL3Q96JM7 780 aaPredicted RBP9.97□□□□□ -0.81
RFC1-216ENST00000514572 DDX12PQ92771 950 aa9.96□□□□□ -0.82
RFC1-216ENST00000514572 ZNF316A6NFI3 1004 aaPredicted RBP9.95□□□□□ -0.82
RFC1-216ENST00000514572 G3V3G9 751 aa9.95□□□□□ -0.82
RFC1-216ENST00000514572 GOPCQ9HD26 462 aa9.95□□□□□ -0.82
RFC1-216ENST00000514572 SLAIN1Q8ND83 568 aa9.94□□□□□ -0.82
RFC1-216ENST00000514572 EVI5O60447 810 aa9.93□□□□□ -0.82
RFC1-216ENST00000514572 PTCD2Q8WV60 388 aaKnown RBP9.93□□□□□ -0.82
RFC1-216ENST00000514572 FAM163AQ96GL9 167 aaPredicted RBP9.93□□□□□ -0.82
RFC1-216ENST00000514572 RSPH6AQ9H0K4 717 aa9.93□□□□□ -0.82
RFC1-216ENST00000514572 ANO8Q9HCE9 1232 aaPredicted RBP9.92□□□□□ -0.82
RFC1-216ENST00000514572 TBC1D12O60347 775 aa9.91□□□□□ -0.82
RFC1-216ENST00000514572 ONECUT3O60422 494 aaPredicted RBP9.91□□□□□ -0.82
RFC1-216ENST00000514572 LCE2DQ5TA82 110 aaPredicted RBP9.91□□□□□ -0.82
RFC1-216ENST00000514572 POTEMA6NI47 508 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms