RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 PLCG2P16885 1265 aa9.1□□□□□ -0.95
HMGB1P28-201ENST00000507778 GPHNQ9NQX3 736 aaPredicted RBP9.1□□□□□ -0.95
HMGB1P28-201ENST00000507778 G3V3G9 751 aa9.09□□□□□ -0.95
HMGB1P28-201ENST00000507778 BOLA1Q9Y3E2 137 aa9.09□□□□□ -0.95
HMGB1P28-201ENST00000507778 C7P10643 843 aa9.07□□□□□ -0.96
HMGB1P28-201ENST00000507778 TULP1O00294 542 aaPredicted RBP9.06□□□□□ -0.96
HMGB1P28-201ENST00000507778 SEC24BO95487 1268 aa9.06□□□□□ -0.96
HMGB1P28-201ENST00000507778 CAMK2BQ13554 666 aa9.06□□□□□ -0.96
HMGB1P28-201ENST00000507778 PPP1R15BQ5SWA1 713 aa9.06□□□□□ -0.96
HMGB1P28-201ENST00000507778 PELP1Q8IZL8 1130 aaKnown RBP9.06□□□□□ -0.96
HMGB1P28-201ENST00000507778 TMC2Q8TDI7 906 aa9.06□□□□□ -0.96
HMGB1P28-201ENST00000507778 SLC39A7Q92504 469 aa9.06□□□□□ -0.96
HMGB1P28-201ENST00000507778 TMEM121BQ9BXQ6 578 aaPredicted RBP9.06□□□□□ -0.96
HMGB1P28-201ENST00000507778 L3MBTL3Q96JM7 780 aaPredicted RBP9.05□□□□□ -0.96
HMGB1P28-201ENST00000507778 ARIH1Q9Y4X5 557 aaPredicted RBP9.05□□□□□ -0.96
HMGB1P28-201ENST00000507778 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.03□□□□□ -0.96
HMGB1P28-201ENST00000507778 SEMA3EO15041 775 aa9.02□□□□□ -0.97
HMGB1P28-201ENST00000507778 DSG2Q14126 1118 aa9.02□□□□□ -0.97
HMGB1P28-201ENST00000507778 METRNQ9UJH8 293 aa9.02□□□□□ -0.97
HMGB1P28-201ENST00000507778 COLQQ9Y215 455 aaPredicted RBP9.02□□□□□ -0.97
HMGB1P28-201ENST00000507778 LMOD2Q6P5Q4 547 aa9.01□□□□□ -0.97
HMGB1P28-201ENST00000507778 TESPA1A2RU30 521 aaPredicted RBP9□□□□□ -0.97
HMGB1P28-201ENST00000507778 FOXK1P85037 733 aa9□□□□□ -0.97
HMGB1P28-201ENST00000507778 C2orf72A6NCS6 295 aa8.99□□□□□ -0.97
HMGB1P28-201ENST00000507778 SMYD5Q6GMV2 418 aa8.98□□□□□ -0.97
HMGB1P28-201ENST00000507778 KIF3CO14782 793 aa8.97□□□□□ -0.97
HMGB1P28-201ENST00000507778 PLPP6Q8IY26 295 aa8.97□□□□□ -0.97
HMGB1P28-201ENST00000507778 EMILIN3Q9NT22 766 aa8.96□□□□□ -0.98
HMGB1P28-201ENST00000507778 POTEFA5A3E0 1075 aa8.95□□□□□ -0.98
HMGB1P28-201ENST00000507778 POTEB2H3BUK9 544 aa8.94□□□□□ -0.98
HMGB1P28-201ENST00000507778 DPYSL4O14531 572 aa8.94□□□□□ -0.98
HMGB1P28-201ENST00000507778 MAMSTRQ6ZN01 415 aa8.94□□□□□ -0.98
HMGB1P28-201ENST00000507778 SPDYE16A6NNV3 312 aaPredicted RBP8.92□□□□□ -0.98
HMGB1P28-201ENST00000507778 TMEM92Q6UXU6 159 aa8.92□□□□□ -0.98
HMGB1P28-201ENST00000507778 C3orf67Q6ZVT6 689 aa8.91□□□□□ -0.98
HMGB1P28-201ENST00000507778 OTUD5Q96G74 571 aa8.91□□□□□ -0.98
HMGB1P28-201ENST00000507778 MAP3K9P80192 1104 aa8.89□□□□□ -0.99
HMGB1P28-201ENST00000507778 PDIA6Q15084 440 aa8.89□□□□□ -0.99
HMGB1P28-201ENST00000507778 MLLT3P42568 568 aaPredicted RBP8.88□□□□□ -0.99
HMGB1P28-201ENST00000507778 ZC3H15Q8WU90 426 aaKnown RBP8.88□□□□□ -0.99
HMGB1P28-201ENST00000507778 SCUBE2Q9NQ36 999 aa8.88□□□□□ -0.99
HMGB1P28-201ENST00000507778 OXER1Q8TDS5 423 aa8.85□□□□□ -0.99
HMGB1P28-201ENST00000507778 UPF1Q92900 1129 aaKnown RBP eCLIP8.85□□□□□ -0.99
HMGB1P28-201ENST00000507778 TBC1D12O60347 775 aa8.83□□□□□ -1
HMGB1P28-201ENST00000507778 RBM26Q5T8P6 1007 aaKnown RBP8.83□□□□□ -1
HMGB1P28-201ENST00000507778 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.83□□□□□ -1
HMGB1P28-201ENST00000507778 POTEJP0CG39 1038 aa8.82□□□□□ -1
HMGB1P28-201ENST00000507778 ZMYND10O75800 440 aa8.8□□□□□ -1
HMGB1P28-201ENST00000507778 GPIHBP1Q8IV16 184 aa8.8□□□□□ -1
HMGB1P28-201ENST00000507778 GRXCR2A6NFK2 248 aa8.79□□□□□ -1
HMGB1P28-201ENST00000507778 PTCD2Q8WV60 388 aaKnown RBP8.79□□□□□ -1
HMGB1P28-201ENST00000507778 EVI5O60447 810 aa8.78□□□□□ -1
HMGB1P28-201ENST00000507778 SLC34A2O95436 690 aa8.78□□□□□ -1
HMGB1P28-201ENST00000507778 ZNF316A6NFI3 1004 aaPredicted RBP8.77□□□□□ -1.01
HMGB1P28-201ENST00000507778 PTGER2P43116 358 aa8.77□□□□□ -1.01
HMGB1P28-201ENST00000507778 BARGINQ6ZT62 677 aa8.76□□□□□ -1.01
HMGB1P28-201ENST00000507778 SLC24A3Q9HC58 644 aa8.76□□□□□ -1.01
HMGB1P28-201ENST00000507778 OSBPP22059 807 aa8.74□□□□□ -1.01
HMGB1P28-201ENST00000507778 DDX12PQ92771 950 aa8.74□□□□□ -1.01
HMGB1P28-201ENST00000507778 KRI1Q8N9T8 703 aaKnown RBP8.73□□□□□ -1.01
HMGB1P28-201ENST00000507778 FAM163AQ96GL9 167 aaPredicted RBP8.72□□□□□ -1.01
HMGB1P28-201ENST00000507778 ANO8Q9HCE9 1232 aaPredicted RBP8.72□□□□□ -1.01
HMGB1P28-201ENST00000507778 NUTM2FA1L443 756 aa8.71□□□□□ -1.02
HMGB1P28-201ENST00000507778 SLAIN1Q8ND83 568 aa8.71□□□□□ -1.02
HMGB1P28-201ENST00000507778 PCDHGA4Q9Y5G9 962 aa8.71□□□□□ -1.02
HMGB1P28-201ENST00000507778 AK7Q96M32 723 aa8.69□□□□□ -1.02
HMGB1P28-201ENST00000507778 BRPF1P55201 1214 aaPredicted RBP8.68□□□□□ -1.02
HMGB1P28-201ENST00000507778 GPR37O15354 613 aa8.67□□□□□ -1.02
HMGB1P28-201ENST00000507778 NEUROD2Q15784 382 aa8.67□□□□□ -1.02
HMGB1P28-201ENST00000507778 FCHSD2O94868 740 aa8.66□□□□□ -1.02
HMGB1P28-201ENST00000507778 PHF14O94880 888 aa8.66□□□□□ -1.02
HMGB1P28-201ENST00000507778 DOK7Q18PE1 504 aa8.66□□□□□ -1.02
HMGB1P28-201ENST00000507778 EPAS1Q99814 870 aa8.66□□□□□ -1.02
HMGB1P28-201ENST00000507778 PRIM1P49642 420 aaKnown RBP8.65□□□□□ -1.02
HMGB1P28-201ENST00000507778 TMEM132AQ24JP5 1023 aa8.65□□□□□ -1.02
HMGB1P28-201ENST00000507778 POTEMA6NI47 508 aa8.63□□□□□ -1.03
HMGB1P28-201ENST00000507778 RIMBP2O15034 1052 aa8.63□□□□□ -1.03
HMGB1P28-201ENST00000507778 GNPATO15228 680 aa8.63□□□□□ -1.03
HMGB1P28-201ENST00000507778 HIC1Q14526 733 aa8.63□□□□□ -1.03
HMGB1P28-201ENST00000507778 POTEGQ6S5H5 508 aa8.63□□□□□ -1.03
HMGB1P28-201ENST00000507778 MINK1Q8N4C8 1332 aaPredicted RBP8.62□□□□□ -1.03
HMGB1P28-201ENST00000507778 KDM4FA0A1W2PPD8 638 aa8.62□□□□□ -1.03
HMGB1P28-201ENST00000507778 SNPHO15079 494 aa8.62□□□□□ -1.03
HMGB1P28-201ENST00000507778 TYW1BQ6NUM6 668 aa8.62□□□□□ -1.03
HMGB1P28-201ENST00000507778 PCDHGA10Q9Y5H3 936 aa8.62□□□□□ -1.03
HMGB1P28-201ENST00000507778 MAP3K7O43318 606 aa8.61□□□□□ -1.03
HMGB1P28-201ENST00000507778 HOXB3P14651 431 aaPredicted RBP8.61□□□□□ -1.03
HMGB1P28-201ENST00000507778 EN1Q05925 392 aaPredicted RBP8.61□□□□□ -1.03
HMGB1P28-201ENST00000507778 MAP2K5Q13163 448 aa8.61□□□□□ -1.03
HMGB1P28-201ENST00000507778 ARSIQ5FYB1 569 aa8.61□□□□□ -1.03
HMGB1P28-201ENST00000507778 JPH4Q96JJ6 628 aa8.61□□□□□ -1.03
HMGB1P28-201ENST00000507778 ZSWIM6Q9HCJ5 1215 aa8.61□□□□□ -1.03
HMGB1P28-201ENST00000507778 TRIM66O15016 1216 aa8.6□□□□□ -1.03
HMGB1P28-201ENST00000507778 PTGDRQ13258 359 aa8.6□□□□□ -1.03
HMGB1P28-201ENST00000507778 ZNF710Q8N1W2 664 aa8.6□□□□□ -1.03
HMGB1P28-201ENST00000507778 FBXW7Q969H0 707 aa8.6□□□□□ -1.03
HMGB1P28-201ENST00000507778 RBM33Q96EV2 1170 aaKnown RBP8.6□□□□□ -1.03
HMGB1P28-201ENST00000507778 IRF6O14896 467 aa8.59□□□□□ -1.03
HMGB1P28-201ENST00000507778 NUDT7P0C024 238 aa8.59□□□□□ -1.03
HMGB1P28-201ENST00000507778 FOSBP53539 338 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms