RNA–Protein interactions for RNA: ENST00000498041.1

RIF1-212, Transcript of replication timing regulatory factor 1, humanhuman

TSL 3

Gene RIF1, Length 776 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-212ENST00000498041 ILDR1Q86SU0 546 aaPredicted RBP7.77□□□□□ -1.17
RIF1-212ENST00000498041 BCL11BQ9C0K0 894 aaPredicted RBP7.77□□□□□ -1.17
RIF1-212ENST00000498041 STK24Q9Y6E0 443 aa7.77□□□□□ -1.17
RIF1-212ENST00000498041 DOK7Q18PE1 504 aa7.74□□□□□ -1.17
RIF1-212ENST00000498041 RIMBP2O15034 1052 aa7.72□□□□□ -1.17
RIF1-212ENST00000498041 HOXB1P14653 301 aaPredicted RBP7.72□□□□□ -1.17
RIF1-212ENST00000498041 VARS2Q5ST30 1063 aaKnown RBP7.72□□□□□ -1.17
RIF1-212ENST00000498041 DNAJC5Q9H3Z4 198 aa7.72□□□□□ -1.17
RIF1-212ENST00000498041 MICALL2Q8IY33 904 aa7.71□□□□□ -1.18
RIF1-212ENST00000498041 BBXQ8WY36 941 aaPredicted RBP7.71□□□□□ -1.18
RIF1-212ENST00000498041 PHF8Q9UPP1 1060 aa7.71□□□□□ -1.18
RIF1-212ENST00000498041 TMEM92Q6UXU6 159 aa7.69□□□□□ -1.18
RIF1-212ENST00000498041 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.68□□□□□ -1.18
RIF1-212ENST00000498041 SOX12O15370 315 aa7.67□□□□□ -1.18
RIF1-212ENST00000498041 MS4A4AQ96JQ5 239 aa7.66□□□□□ -1.18
RIF1-212ENST00000498041 NKX1-1Q15270 411 aaPredicted RBP7.65□□□□□ -1.18
RIF1-212ENST00000498041 ARSIQ5FYB1 569 aa7.64□□□□□ -1.19
RIF1-212ENST00000498041 NLRP6P59044 892 aa7.63□□□□□ -1.19
RIF1-212ENST00000498041 KHSRPQ92945 711 aaKnown RBP eCLIP7.63□□□□□ -1.195e-10■■□□□ 13.3
RIF1-212ENST00000498041 RNF166Q96A37 237 aaPredicted RBP7.63□□□□□ -1.19
RIF1-212ENST00000498041 RYDENQ9NUL5 291 aaKnown RBP7.63□□□□□ -1.19
RIF1-212ENST00000498041 MFRPQ9BY79 579 aa7.62□□□□□ -1.19
RIF1-212ENST00000498041 ANKRD13DQ6ZTN6 518 aa7.61□□□□□ -1.19
RIF1-212ENST00000498041 SPRYD3Q8NCJ5 442 aa7.61□□□□□ -1.19
RIF1-212ENST00000498041 PAXIP1Q6ZW49 1069 aaPredicted RBP7.6□□□□□ -1.19
RIF1-212ENST00000498041 FBXO22Q8NEZ5 403 aa7.6□□□□□ -1.19
RIF1-212ENST00000498041 MYT1LQ9UL68 1186 aa7.6□□□□□ -1.19
RIF1-212ENST00000498041 GTPBP6O43824 516 aaPredicted RBP7.59□□□□□ -1.19
RIF1-212ENST00000498041 GPR153Q6NV75 609 aa7.59□□□□□ -1.19
RIF1-212ENST00000498041 ZNF687Q8N1G0 1237 aa7.58□□□□□ -1.2
RIF1-212ENST00000498041 CFAP44Q96MT7 982 aa7.58□□□□□ -1.2
RIF1-212ENST00000498041 ZSWIM6Q9HCJ5 1215 aa7.58□□□□□ -1.2
RIF1-212ENST00000498041 PLCB2Q00722 1185 aa7.56□□□□□ -1.2
RIF1-212ENST00000498041 ZNF316A6NFI3 1004 aaPredicted RBP7.54□□□□□ -1.2
RIF1-212ENST00000498041 NUDT7P0C024 238 aa7.53□□□□□ -1.2
RIF1-212ENST00000498041 C2orf72A6NCS6 295 aa7.52□□□□□ -1.21
RIF1-212ENST00000498041 PPP1R37O75864 691 aa7.51□□□□□ -1.21
RIF1-212ENST00000498041 AXIN2Q9Y2T1 843 aa7.51□□□□□ -1.21
RIF1-212ENST00000498041 LSM11P83369 360 aaKnown RBP eCLIP7.48□□□□□ -1.21
RIF1-212ENST00000498041 TMC2Q8TDI7 906 aa7.48□□□□□ -1.21
RIF1-212ENST00000498041 LHX6Q9UPM6 363 aa7.47□□□□□ -1.21
RIF1-212ENST00000498041 PCDHGA4Q9Y5G9 962 aa7.46□□□□□ -1.22
RIF1-212ENST00000498041 HAP1P54257 671 aaPredicted RBP7.45□□□□□ -1.22
RIF1-212ENST00000498041 PTGER2P43116 358 aa7.44□□□□□ -1.22
RIF1-212ENST00000498041 TSHZ2Q9NRE2 1034 aa7.44□□□□□ -1.22
RIF1-212ENST00000498041 KIF3CO14782 793 aa7.43□□□□□ -1.22
RIF1-212ENST00000498041 POTEEQ6S8J3 1075 aa7.4□□□□□ -1.22
RIF1-212ENST00000498041 CADPS2Q86UW7 1296 aa7.39□□□□□ -1.23
RIF1-212ENST00000498041 PBX2P40425 430 aa7.38□□□□□ -1.23
RIF1-212ENST00000498041 SLC24A1O60721 1099 aa7.37□□□□□ -1.23
RIF1-212ENST00000498041 PDE4AP27815 886 aa7.37□□□□□ -1.23
RIF1-212ENST00000498041 PLA2G2EQ9NZK7 142 aa7.37□□□□□ -1.23
RIF1-212ENST00000498041 PSEN2P49810 448 aa7.36□□□□□ -1.23
RIF1-212ENST00000498041 ADGRD1Q6QNK2 874 aa7.36□□□□□ -1.23
RIF1-212ENST00000498041 ARHGAP33O14559 1287 aa7.35□□□□□ -1.23
RIF1-212ENST00000498041 SLC34A2O95436 690 aa7.35□□□□□ -1.23
RIF1-212ENST00000498041 PLPP6Q8IY26 295 aa7.35□□□□□ -1.23
RIF1-212ENST00000498041 VSIG10Q8N0Z9 540 aa7.35□□□□□ -1.23
RIF1-212ENST00000498041 STAC3Q96MF2 364 aa7.35□□□□□ -1.23
RIF1-212ENST00000498041 CRISPLD2Q9H0B8 497 aa7.35□□□□□ -1.23
RIF1-212ENST00000498041 GPHNQ9NQX3 736 aaPredicted RBP7.35□□□□□ -1.23
RIF1-212ENST00000498041 NCKAP5LQ9HCH0 1330 aa7.34□□□□□ -1.23
RIF1-212ENST00000498041 DMRTA1Q5VZB9 504 aa7.34□□□□□ -1.23
RIF1-212ENST00000498041 KCTD12Q96CX2 325 aaKnown RBP7.33□□□□□ -1.24
RIF1-212ENST00000498041 LARP6Q9BRS8 491 aaKnown RBP7.33□□□□□ -1.24
RIF1-212ENST00000498041 HCSTQ9UBK5 93 aa7.33□□□□□ -1.24
RIF1-212ENST00000498041 WDR70Q9NW82 654 aa7.32□□□□□ -1.24
RIF1-212ENST00000498041 FOXK1P85037 733 aa7.31□□□□□ -1.24
RIF1-212ENST00000498041 MFSD10Q14728 455 aa7.31□□□□□ -1.24
RIF1-212ENST00000498041 PPP4R3BQ5MIZ7 849 aa7.31□□□□□ -1.24
RIF1-212ENST00000498041 UPF1Q92900 1129 aaKnown RBP eCLIP7.31□□□□□ -1.24
RIF1-212ENST00000498041 DDX27Q96GQ7 796 aaKnown RBP7.31□□□□□ -1.24
RIF1-212ENST00000498041 PSDA5PKW4 1024 aaPredicted RBP7.3□□□□□ -1.24
RIF1-212ENST00000498041 DSG2Q14126 1118 aa7.3□□□□□ -1.24
RIF1-212ENST00000498041 KCNK17Q96T54 332 aa7.3□□□□□ -1.24
RIF1-212ENST00000498041 KDM2AQ9Y2K7 1162 aa7.3□□□□□ -1.24
RIF1-212ENST00000498041 TBC1D12O60347 775 aa7.29□□□□□ -1.24
RIF1-212ENST00000498041 PPP1R15BQ5SWA1 713 aa7.29□□□□□ -1.24
RIF1-212ENST00000498041 PTPN5P54829 565 aa7.28□□□□□ -1.24
RIF1-212ENST00000498041 PTCD2Q8WV60 388 aaKnown RBP7.28□□□□□ -1.24
RIF1-212ENST00000498041 KCNH8Q96L42 1107 aa7.28□□□□□ -1.24
RIF1-212ENST00000498041 ZNF454Q8N9F8 522 aa7.25□□□□□ -1.25
RIF1-212ENST00000498041 KDM4FA0A1W2PPD8 638 aa7.24□□□□□ -1.25
RIF1-212ENST00000498041 TK2O00142 265 aa7.24□□□□□ -1.25
RIF1-212ENST00000498041 E2F4Q16254 413 aa7.24□□□□□ -1.25
RIF1-212ENST00000498041 HRO43593 1189 aa7.23□□□□□ -1.25
RIF1-212ENST00000498041 CAMK2BQ13554 666 aa7.22□□□□□ -1.25
RIF1-212ENST00000498041 GOLGA8CPA6NN73 597 aa7.21□□□□□ -1.26
RIF1-212ENST00000498041 P3H3Q8IVL6 736 aa7.21□□□□□ -1.26
RIF1-212ENST00000498041 VPS9D1Q9Y2B5 631 aa7.19□□□□□ -1.26
RIF1-212ENST00000498041 KCNV2Q8TDN2 545 aa7.18□□□□□ -1.26
RIF1-212ENST00000498041 EMILIN3Q9NT22 766 aa7.18□□□□□ -1.26
RIF1-212ENST00000498041 OXER1Q8TDS5 423 aa7.17□□□□□ -1.26
RIF1-212ENST00000498041 ARIH1Q9Y4X5 557 aaPredicted RBP7.17□□□□□ -1.26
RIF1-212ENST00000498041 PTPREP23469 700 aa7.16□□□□□ -1.26
RIF1-212ENST00000498041 MAP3K9P80192 1104 aa7.16□□□□□ -1.26
RIF1-212ENST00000498041 ARHGEF1Q92888 912 aaKnown RBP7.16□□□□□ -1.26
RIF1-212ENST00000498041 WNT2BQ93097 391 aa7.15□□□□□ -1.26
RIF1-212ENST00000498041 DPYSL4O14531 572 aa7.14□□□□□ -1.27
RIF1-212ENST00000498041 MRPL50Q8N5N7 158 aaKnown RBP7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms