RNA–Protein interactions for RNA: ENST00000497203.1

SMC4-225, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 490 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-225ENST00000497203 SOX12O15370 315 aa10.32□□□□□ -0.76
SMC4-225ENST00000497203 PHF8Q9UPP1 1060 aa10.32□□□□□ -0.76
SMC4-225ENST00000497203 MFRPQ9BY79 579 aa10.31□□□□□ -0.76
SMC4-225ENST00000497203 DPY19L2Q6NUT2 758 aa10.29□□□□□ -0.76
SMC4-225ENST00000497203 HOXB3P14651 431 aaPredicted RBP10.28□□□□□ -0.76
SMC4-225ENST00000497203 FBXO22Q8NEZ5 403 aa10.28□□□□□ -0.76
SMC4-225ENST00000497203 MS4A4AQ96JQ5 239 aa10.28□□□□□ -0.76
SMC4-225ENST00000497203 BBXQ8WY36 941 aaPredicted RBP10.27□□□□□ -0.77
SMC4-225ENST00000497203 NLRP6P59044 892 aa10.26□□□□□ -0.77
SMC4-225ENST00000497203 BOLA1Q9Y3E2 137 aa10.26□□□□□ -0.77
SMC4-225ENST00000497203 HOXB1P14653 301 aaPredicted RBP10.22□□□□□ -0.77
SMC4-225ENST00000497203 GTPBP6O43824 516 aaPredicted RBP10.21□□□□□ -0.77
SMC4-225ENST00000497203 MYT1LQ9UL68 1186 aa10.21□□□□□ -0.77
SMC4-225ENST00000497203 G3V3G9 751 aa10.2□□□□□ -0.78
SMC4-225ENST00000497203 PPP1R37O75864 691 aa10.19□□□□□ -0.78
SMC4-225ENST00000497203 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.18□□□□□ -0.78
SMC4-225ENST00000497203 DOK7Q18PE1 504 aa10.17□□□□□ -0.78
SMC4-225ENST00000497203 ZNF710Q8N1W2 664 aa10.16□□□□□ -0.78
SMC4-225ENST00000497203 RYDENQ9NUL5 291 aaKnown RBP10.15□□□□□ -0.78
SMC4-225ENST00000497203 PAXIP1Q6ZW49 1069 aaPredicted RBP10.14□□□□□ -0.79
SMC4-225ENST00000497203 MICALL2Q8IY33 904 aa10.13□□□□□ -0.79
SMC4-225ENST00000497203 SPRYD3Q8NCJ5 442 aa10.13□□□□□ -0.79
SMC4-225ENST00000497203 ERBB3P21860 1342 aa10.12□□□□□ -0.79
SMC4-225ENST00000497203 CFAP44Q96MT7 982 aa10.12□□□□□ -0.79
SMC4-225ENST00000497203 RIMBP2O15034 1052 aa10.1□□□□□ -0.79
SMC4-225ENST00000497203 SLC24A1O60721 1099 aa10.1□□□□□ -0.79
SMC4-225ENST00000497203 VARS2Q5ST30 1063 aaKnown RBP10.08□□□□□ -0.8
SMC4-225ENST00000497203 ZSWIM6Q9HCJ5 1215 aa10.08□□□□□ -0.8
SMC4-225ENST00000497203 TMEM92Q6UXU6 159 aa10.07□□□□□ -0.8
SMC4-225ENST00000497203 PLCB2Q00722 1185 aa10.03□□□□□ -0.8
SMC4-225ENST00000497203 ZNF687Q8N1G0 1237 aa10.03□□□□□ -0.8
SMC4-225ENST00000497203 GPR153Q6NV75 609 aa10.02□□□□□ -0.81
SMC4-225ENST00000497203 CADPS2Q86UW7 1296 aa10□□□□□ -0.81
SMC4-225ENST00000497203 PTGER2P43116 358 aa9.98□□□□□ -0.81
SMC4-225ENST00000497203 TSHZ2Q9NRE2 1034 aa9.96□□□□□ -0.82
SMC4-225ENST00000497203 PLA2G2EQ9NZK7 142 aa9.95□□□□□ -0.82
SMC4-225ENST00000497203 NCKAP5LQ9HCH0 1330 aa9.94□□□□□ -0.82
SMC4-225ENST00000497203 C2orf72A6NCS6 295 aa9.94□□□□□ -0.82
SMC4-225ENST00000497203 KIF3CO14782 793 aa9.94□□□□□ -0.82
SMC4-225ENST00000497203 CRISPLD2Q9H0B8 497 aa9.93□□□□□ -0.82
SMC4-225ENST00000497203 TMC2Q8TDI7 906 aa9.92□□□□□ -0.82
SMC4-225ENST00000497203 GPHNQ9NQX3 736 aaPredicted RBP9.91□□□□□ -0.82
SMC4-225ENST00000497203 ARSIQ5FYB1 569 aa9.9□□□□□ -0.82
SMC4-225ENST00000497203 HAP1P54257 671 aaPredicted RBP9.89□□□□□ -0.83
SMC4-225ENST00000497203 ZNF316A6NFI3 1004 aaPredicted RBP9.88□□□□□ -0.83
SMC4-225ENST00000497203 PDE4AP27815 886 aa9.88□□□□□ -0.83
SMC4-225ENST00000497203 LARP6Q9BRS8 491 aaKnown RBP9.87□□□□□ -0.83
SMC4-225ENST00000497203 LSM11P83369 360 aaKnown RBP eCLIP9.86□□□□□ -0.83
SMC4-225ENST00000497203 DSG2Q14126 1118 aa9.86□□□□□ -0.83
SMC4-225ENST00000497203 FOXK1P85037 733 aa9.85□□□□□ -0.83
SMC4-225ENST00000497203 MFSD10Q14728 455 aa9.84□□□□□ -0.83
SMC4-225ENST00000497203 ANKRD13DQ6ZTN6 518 aa9.84□□□□□ -0.83
SMC4-225ENST00000497203 KHSRPQ92945 711 aaKnown RBP eCLIP9.84□□□□□ -0.832e-16■■■■□ 19.8
SMC4-225ENST00000497203 PPP1R15BQ5SWA1 713 aa9.83□□□□□ -0.84
SMC4-225ENST00000497203 PLPP6Q8IY26 295 aa9.83□□□□□ -0.84
SMC4-225ENST00000497203 DDX27Q96GQ7 796 aaKnown RBP9.82□□□□□ -0.84
SMC4-225ENST00000497203 PBX2P40425 430 aa9.81□□□□□ -0.84
SMC4-225ENST00000497203 POTEEQ6S8J3 1075 aa9.76□□□□□ -0.85
SMC4-225ENST00000497203 KDM2AQ9Y2K7 1162 aa9.76□□□□□ -0.85
SMC4-225ENST00000497203 SLC34A2O95436 690 aa9.75□□□□□ -0.85
SMC4-225ENST00000497203 NUDT7P0C024 238 aa9.75□□□□□ -0.85
SMC4-225ENST00000497203 HCSTQ9UBK5 93 aa9.75□□□□□ -0.85
SMC4-225ENST00000497203 WDR70Q9NW82 654 aa9.74□□□□□ -0.85
SMC4-225ENST00000497203 LHX6Q9UPM6 363 aa9.73□□□□□ -0.85
SMC4-225ENST00000497203 EMILIN3Q9NT22 766 aa9.72□□□□□ -0.85
SMC4-225ENST00000497203 PCDHGA4Q9Y5G9 962 aa9.72□□□□□ -0.85
SMC4-225ENST00000497203 CAMK2BQ13554 666 aa9.71□□□□□ -0.86
SMC4-225ENST00000497203 VSIG10Q8N0Z9 540 aa9.71□□□□□ -0.86
SMC4-225ENST00000497203 OXER1Q8TDS5 423 aa9.71□□□□□ -0.86
SMC4-225ENST00000497203 PTCD2Q8WV60 388 aaKnown RBP9.71□□□□□ -0.86
SMC4-225ENST00000497203 UPF1Q92900 1129 aaKnown RBP eCLIP9.71□□□□□ -0.86
SMC4-225ENST00000497203 AXIN2Q9Y2T1 843 aa9.7□□□□□ -0.86
SMC4-225ENST00000497203 E2F4Q16254 413 aa9.69□□□□□ -0.86
SMC4-225ENST00000497203 ADGRD1Q6QNK2 874 aa9.66□□□□□ -0.86
SMC4-225ENST00000497203 IRX2Q9BZI1 471 aaPredicted RBP9.65□□□□□ -0.86
SMC4-225ENST00000497203 PSDA5PKW4 1024 aaPredicted RBP9.64□□□□□ -0.87
SMC4-225ENST00000497203 DPYSL4O14531 572 aa9.64□□□□□ -0.87
SMC4-225ENST00000497203 ARHGAP33O14559 1287 aa9.64□□□□□ -0.87
SMC4-225ENST00000497203 KCNV2Q8TDN2 545 aa9.64□□□□□ -0.87
SMC4-225ENST00000497203 KDM4FA0A1W2PPD8 638 aa9.63□□□□□ -0.87
SMC4-225ENST00000497203 TBC1D12O60347 775 aa9.63□□□□□ -0.87
SMC4-225ENST00000497203 MAP3K9P80192 1104 aa9.62□□□□□ -0.87
SMC4-225ENST00000497203 TK2O00142 265 aa9.61□□□□□ -0.87
SMC4-225ENST00000497203 RGS20O76081 388 aa9.6□□□□□ -0.87
SMC4-225ENST00000497203 HRO43593 1189 aa9.59□□□□□ -0.87
SMC4-225ENST00000497203 EVI5O60447 810 aa9.59□□□□□ -0.87
SMC4-225ENST00000497203 ARIH1Q9Y4X5 557 aaPredicted RBP9.59□□□□□ -0.87
SMC4-225ENST00000497203 P3H3Q8IVL6 736 aa9.57□□□□□ -0.88
SMC4-225ENST00000497203 ARHGEF1Q92888 912 aaKnown RBP9.56□□□□□ -0.88
SMC4-225ENST00000497203 ANO8Q9HCE9 1232 aaPredicted RBP9.56□□□□□ -0.88
SMC4-225ENST00000497203 PDIA6Q15084 440 aa9.55□□□□□ -0.88
SMC4-225ENST00000497203 DMRTA1Q5VZB9 504 aa9.55□□□□□ -0.88
SMC4-225ENST00000497203 PSEN2P49810 448 aa9.53□□□□□ -0.88
SMC4-225ENST00000497203 SPDYE16A6NNV3 312 aaPredicted RBP9.52□□□□□ -0.89
SMC4-225ENST00000497203 PPP4R3BQ5MIZ7 849 aa9.5□□□□□ -0.89
SMC4-225ENST00000497203 FOSBP53539 338 aa9.48□□□□□ -0.89
SMC4-225ENST00000497203 DDX12PQ92771 950 aa9.48□□□□□ -0.89
SMC4-225ENST00000497203 KCTD12Q96CX2 325 aaKnown RBP9.48□□□□□ -0.89
SMC4-225ENST00000497203 ZNF454Q8N9F8 522 aa9.47□□□□□ -0.89
SMC4-225ENST00000497203 JPH4Q96JJ6 628 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 1199.4 ms