RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 PDE4DQ08499 809 aa8.55□□□□□ -1.04
VPS13A-212ENST00000493341 TRIM66O15016 1216 aa8.54□□□□□ -1.04
VPS13A-212ENST00000493341 GOLGA2Q08379 1002 aa8.54□□□□□ -1.04
VPS13A-212ENST00000493341 ARID3AQ99856 593 aa8.53□□□□□ -1.04
VPS13A-212ENST00000493341 PPP1R15BQ5SWA1 713 aa8.5□□□□□ -1.05
VPS13A-212ENST00000493341 DPYSL4O14531 572 aa8.49□□□□□ -1.05
VPS13A-212ENST00000493341 FAM117AQ9C073 453 aa8.49□□□□□ -1.05
VPS13A-212ENST00000493341 MKRN3Q13064 507 aaKnown RBP8.47□□□□□ -1.05
VPS13A-212ENST00000493341 ZNF316A6NFI3 1004 aaPredicted RBP8.47□□□□□ -1.05
VPS13A-212ENST00000493341 TRIM26Q12899 539 aaPredicted RBP8.47□□□□□ -1.05
VPS13A-212ENST00000493341 TMEM106CQ9BVX2 250 aa8.46□□□□□ -1.05
VPS13A-212ENST00000493341 GPHNQ9NQX3 736 aaPredicted RBP8.46□□□□□ -1.05
VPS13A-212ENST00000493341 EMILIN3Q9NT22 766 aa8.44□□□□□ -1.06
VPS13A-212ENST00000493341 RANGAP1P46060 587 aaPredicted RBP8.44□□□□□ -1.06
VPS13A-212ENST00000493341 ZRANB1Q9UGI0 708 aa8.44□□□□□ -1.06
VPS13A-212ENST00000493341 ARID3CA6NKF2 412 aa8.43□□□□□ -1.06
VPS13A-212ENST00000493341 SPDYE16A6NNV3 312 aaPredicted RBP8.43□□□□□ -1.06
VPS13A-212ENST00000493341 PDIA6Q15084 440 aa8.43□□□□□ -1.06
VPS13A-212ENST00000493341 FXR2P51116 673 aaKnown RBP eCLIP8.42□□□□□ -1.062e-6■■■■□ 19.8
VPS13A-212ENST00000493341 C1orf115Q9H7X2 142 aa8.42□□□□□ -1.06
VPS13A-212ENST00000493341 PHF12Q96QT6 1004 aa8.42□□□□□ -1.06
VPS13A-212ENST00000493341 APBB1O00213 710 aa8.41□□□□□ -1.06
VPS13A-212ENST00000493341 DDRGK1Q96HY6 314 aa8.41□□□□□ -1.06
VPS13A-212ENST00000493341 NUTM2FA1L443 756 aa8.41□□□□□ -1.06
VPS13A-212ENST00000493341 DSG2Q14126 1118 aa8.41□□□□□ -1.06
VPS13A-212ENST00000493341 MINK1Q8N4C8 1332 aaPredicted RBP8.4□□□□□ -1.06
VPS13A-212ENST00000493341 PLEKHG3A1L390 1219 aa8.4□□□□□ -1.06
VPS13A-212ENST00000493341 GPR37O15354 613 aa8.4□□□□□ -1.06
VPS13A-212ENST00000493341 GRXCR2A6NFK2 248 aa8.39□□□□□ -1.07
VPS13A-212ENST00000493341 HRCP23327 699 aa8.39□□□□□ -1.07
VPS13A-212ENST00000493341 CCDC102AQ96A19 550 aa8.39□□□□□ -1.07
VPS13A-212ENST00000493341 PIP4P2Q8N4L2 257 aa8.38□□□□□ -1.07
VPS13A-212ENST00000493341 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.38□□□□□ -1.071e-8■■■■□ 24.1
VPS13A-212ENST00000493341 MAP2K5Q13163 448 aa8.37□□□□□ -1.07
VPS13A-212ENST00000493341 TRPC6Q9Y210 931 aa8.37□□□□□ -1.07
VPS13A-212ENST00000493341 IRF6O14896 467 aa8.37□□□□□ -1.07
VPS13A-212ENST00000493341 FLIIQ13045 1269 aa8.37□□□□□ -1.07
VPS13A-212ENST00000493341 CD44P16070 742 aaKnown RBP8.36□□□□□ -1.07
VPS13A-212ENST00000493341 PARP9Q8IXQ6 854 aa8.36□□□□□ -1.07
VPS13A-212ENST00000493341 TMC2Q8TDI7 906 aa8.36□□□□□ -1.07
VPS13A-212ENST00000493341 AMHR2Q16671 573 aa8.34□□□□□ -1.07
VPS13A-212ENST00000493341 TTLL12Q14166 644 aaPredicted RBP8.34□□□□□ -1.07
VPS13A-212ENST00000493341 GNPATO15228 680 aa8.33□□□□□ -1.08
VPS13A-212ENST00000493341 FOXK1P85037 733 aa8.33□□□□□ -1.08
VPS13A-212ENST00000493341 MAP3K9P80192 1104 aa8.32□□□□□ -1.08
VPS13A-212ENST00000493341 MS4A3Q96HJ5 214 aa8.32□□□□□ -1.08
VPS13A-212ENST00000493341 FECHP22830 423 aa8.32□□□□□ -1.08
VPS13A-212ENST00000493341 DPY19L2Q6NUT2 758 aa8.32□□□□□ -1.08
VPS13A-212ENST00000493341 PLPP6Q8IY26 295 aa8.31□□□□□ -1.08
VPS13A-212ENST00000493341 ILDR1Q86SU0 546 aaPredicted RBP8.3□□□□□ -1.08
VPS13A-212ENST00000493341 HIC1Q14526 733 aa8.3□□□□□ -1.08
VPS13A-212ENST00000493341 MICALL2Q8IY33 904 aa8.3□□□□□ -1.08
VPS13A-212ENST00000493341 CLUAP1Q96AJ1 413 aa8.3□□□□□ -1.08
VPS13A-212ENST00000493341 NPM2Q86SE8 214 aaKnown RBP8.29□□□□□ -1.08
VPS13A-212ENST00000493341 TTLL13PA6NNM8 815 aa8.29□□□□□ -1.08
VPS13A-212ENST00000493341 PDIA4P13667 645 aaKnown RBP8.29□□□□□ -1.08
VPS13A-212ENST00000493341 OSBPP22059 807 aa8.29□□□□□ -1.08
VPS13A-212ENST00000493341 GOPCQ9HD26 462 aa8.29□□□□□ -1.08
VPS13A-212ENST00000493341 FCHSD2O94868 740 aa8.28□□□□□ -1.08
VPS13A-212ENST00000493341 ONECUT3O60422 494 aaPredicted RBP8.27□□□□□ -1.09
VPS13A-212ENST00000493341 SP7Q8TDD2 431 aaPredicted RBP8.27□□□□□ -1.09
VPS13A-212ENST00000493341 DDX12PQ92771 950 aa8.27□□□□□ -1.09
VPS13A-212ENST00000493341 CCDC82Q8N4S0 544 aa8.27□□□□□ -1.09
VPS13A-212ENST00000493341 UPF1Q92900 1129 aaKnown RBP eCLIP8.27□□□□□ -1.09
VPS13A-212ENST00000493341 PCMTD1Q96MG8 357 aaPredicted RBP8.27□□□□□ -1.09
VPS13A-212ENST00000493341 TIE1P35590 1138 aa8.26□□□□□ -1.09
VPS13A-212ENST00000493341 C2orf72A6NCS6 295 aa8.25□□□□□ -1.09
VPS13A-212ENST00000493341 GIGYF2Q6Y7W6 1299 aaKnown RBP8.25□□□□□ -1.09
VPS13A-212ENST00000493341 ZBTB7CA1YPR0 619 aa8.25□□□□□ -1.09
VPS13A-212ENST00000493341 TRAK2O60296 914 aa8.25□□□□□ -1.09
VPS13A-212ENST00000493341 MS4A1P11836 297 aa8.25□□□□□ -1.09
VPS13A-212ENST00000493341 TRIM35Q9UPQ4 493 aa8.25□□□□□ -1.09
VPS13A-212ENST00000493341 A6NJR5 290 aa8.24□□□□□ -1.09
VPS13A-212ENST00000493341 BMP2KQ9NSY1 1161 aaPredicted RBP8.22□□□□□ -1.09
VPS13A-212ENST00000493341 ATP1B4Q9UN42 357 aaPredicted RBP8.22□□□□□ -1.09
VPS13A-212ENST00000493341 PTGDRQ13258 359 aa8.21□□□□□ -1.1
VPS13A-212ENST00000493341 REPIN1Q9BWE0 567 aaKnown RBP8.21□□□□□ -1.1
VPS13A-212ENST00000493341 G3V3G9 751 aa8.2□□□□□ -1.1
VPS13A-212ENST00000493341 HAX1O00165 279 aa8.2□□□□□ -1.1
VPS13A-212ENST00000493341 KIF3CO14782 793 aa8.2□□□□□ -1.1
VPS13A-212ENST00000493341 PTGER2P43116 358 aa8.2□□□□□ -1.1
VPS13A-212ENST00000493341 MCM6Q14566 821 aa8.2□□□□□ -1.1
VPS13A-212ENST00000493341 TBC1D12O60347 775 aa8.19□□□□□ -1.1
VPS13A-212ENST00000493341 PDCD7Q8N8D1 485 aaKnown RBP8.19□□□□□ -1.1
VPS13A-212ENST00000493341 ZNF777Q9ULD5 760 aaPredicted RBP8.19□□□□□ -1.1
VPS13A-212ENST00000493341 BOLA1Q9Y3E2 137 aa8.19□□□□□ -1.1
VPS13A-212ENST00000493341 PRIM1P49642 420 aaKnown RBP8.19□□□□□ -1.1
VPS13A-212ENST00000493341 SH3D19Q5HYK7 790 aa8.17□□□□□ -1.1
VPS13A-212ENST00000493341 CCDC9Q9Y3X0 531 aaKnown RBP8.17□□□□□ -1.1
VPS13A-212ENST00000493341 OXER1Q8TDS5 423 aa8.17□□□□□ -1.1
VPS13A-212ENST00000493341 NECTIN2Q92692 538 aa8.17□□□□□ -1.1
VPS13A-212ENST00000493341 TMEM121BQ9BXQ6 578 aaPredicted RBP8.16□□□□□ -1.1
VPS13A-212ENST00000493341 EVI5O60447 810 aa8.15□□□□□ -1.1
VPS13A-212ENST00000493341 PROSER2Q86WR7 435 aaPredicted RBP8.15□□□□□ -1.1
VPS13A-212ENST00000493341 CLCN1P35523 988 aa8.15□□□□□ -1.11
VPS13A-212ENST00000493341 MDM2Q00987 491 aaPredicted RBP8.15□□□□□ -1.11
VPS13A-212ENST00000493341 RAD21O60216 631 aa8.14□□□□□ -1.11
VPS13A-212ENST00000493341 SSTR3P32745 418 aaPredicted RBP8.13□□□□□ -1.11
VPS13A-212ENST00000493341 SKIV2LQ15477 1246 aaKnown RBP8.13□□□□□ -1.11
VPS13A-212ENST00000493341 POM121Q96HA1 1249 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms