RNA–Protein interactions for RNA: ENST00000492479.1

PTPRE-210, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 5

Gene PTPRE, Length 866 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-210ENST00000492479 DIP2BQ9P265 1576 aa20.84■□□□□ 0.93
PTPRE-210ENST00000492479 CAMSAP2Q08AD1 1489 aa20.83■□□□□ 0.93
PTPRE-210ENST00000492479 CFDP1Q9UEE9 299 aaPredicted RBP20.82■□□□□ 0.92
PTPRE-210ENST00000492479 MAP3K4Q9Y6R4 1608 aa20.82■□□□□ 0.92
PTPRE-210ENST00000492479 KCNH8Q96L42 1107 aa20.81■□□□□ 0.92
PTPRE-210ENST00000492479 DNMT1P26358 1616 aaKnown RBP20.81■□□□□ 0.92
PTPRE-210ENST00000492479 PLEKHH2Q8IVE3 1493 aa20.81■□□□□ 0.92
PTPRE-210ENST00000492479 SAMD9LQ8IVG5 1584 aa20.8■□□□□ 0.92
PTPRE-210ENST00000492479 ARHGEF5Q12774 1597 aa20.8■□□□□ 0.92
PTPRE-210ENST00000492479 KIAA1107Q9UPP5 1409 aa20.79■□□□□ 0.92
PTPRE-210ENST00000492479 ARHGAP5Q13017 1502 aa20.79■□□□□ 0.92
PTPRE-210ENST00000492479 CFAP74Q9C0B2 1584 aa20.77■□□□□ 0.92
PTPRE-210ENST00000492479 CROCC2H7BZ55 1655 aa20.76■□□□□ 0.91
PTPRE-210ENST00000492479 MBD5Q9P267 1494 aa20.75■□□□□ 0.91
PTPRE-210ENST00000492479 ABCC1P33527 1531 aa20.75■□□□□ 0.91
PTPRE-210ENST00000492479 FAM50AQ14320 339 aaKnown RBP20.75■□□□□ 0.91
PTPRE-210ENST00000492479 CD109Q6YHK3 1445 aa20.75■□□□□ 0.91
PTPRE-210ENST00000492479 SHANK2Q9UPX8 1470 aa20.75■□□□□ 0.91
PTPRE-210ENST00000492479 KIF13AQ9H1H9 1805 aa20.74■□□□□ 0.91
PTPRE-210ENST00000492479 AKNAQ7Z591 1439 aa20.74■□□□□ 0.91
PTPRE-210ENST00000492479 DAPK1P53355 1430 aa20.73■□□□□ 0.91
PTPRE-210ENST00000492479 EFCAB2Q5VUJ9 269 aa20.73■□□□□ 0.91
PTPRE-210ENST00000492479 FANCAO15360 1455 aa20.73■□□□□ 0.91
PTPRE-210ENST00000492479 ABCC5O15440 1437 aa20.72■□□□□ 0.91
PTPRE-210ENST00000492479 ZNF644Q9H582 1327 aaPredicted RBP20.72■□□□□ 0.91
PTPRE-210ENST00000492479 PTPRKQ15262 1439 aa20.71■□□□□ 0.91
PTPRE-210ENST00000492479 NEO1Q92859 1461 aa20.71■□□□□ 0.91
PTPRE-210ENST00000492479 RSPH4AQ5TD94 716 aa20.71■□□□□ 0.91
PTPRE-210ENST00000492479 ROCK1Q13464 1354 aa20.69■□□□□ 0.9
PTPRE-210ENST00000492479 ADGRL2O95490 1459 aa20.69■□□□□ 0.9
PTPRE-210ENST00000492479 CCDC141Q6ZP82 1450 aa20.69■□□□□ 0.9
PTPRE-210ENST00000492479 SYCP2Q9BX26 1530 aa20.68■□□□□ 0.9
PTPRE-210ENST00000492479 MAST1Q9Y2H9 1570 aa20.68■□□□□ 0.9
PTPRE-210ENST00000492479 PPRC1Q5VV67 1664 aaKnown RBP20.67■□□□□ 0.9
PTPRE-210ENST00000492479 ARHGEF12Q9NZN5 1544 aa20.67■□□□□ 0.9
PTPRE-210ENST00000492479 HFM1A2PYH4 1435 aa20.66■□□□□ 0.9
PTPRE-210ENST00000492479 ADGBQ8N7X0 1667 aa20.66■□□□□ 0.9
PTPRE-210ENST00000492479 FAM69CQ0P6D2 419 aa20.63■□□□□ 0.89
PTPRE-210ENST00000492479 ZNF777Q9ULD5 760 aaPredicted RBP20.63■□□□□ 0.89
PTPRE-210ENST00000492479 GCC2Q8IWJ2 1684 aa20.63■□□□□ 0.89
PTPRE-210ENST00000492479 ADGRL1O94910 1474 aa20.62■□□□□ 0.89
PTPRE-210ENST00000492479 TEX14Q8IWB6 1497 aa20.62■□□□□ 0.89
PTPRE-210ENST00000492479 C9orf84Q5VXU9 1444 aa20.6■□□□□ 0.89
PTPRE-210ENST00000492479 HRCP23327 699 aa20.59■□□□□ 0.89
PTPRE-210ENST00000492479 NAIPQ13075 1403 aa20.59■□□□□ 0.89
PTPRE-210ENST00000492479 NCOA1Q15788 1441 aa20.59■□□□□ 0.89
PTPRE-210ENST00000492479 PLXNC1O60486 1568 aa20.59■□□□□ 0.89
PTPRE-210ENST00000492479 KDM5CP41229 1560 aa20.59■□□□□ 0.89
PTPRE-210ENST00000492479 RTEL1-TNFRSF6BF6WH68 1400 aa20.58■□□□□ 0.88
PTPRE-210ENST00000492479 SETD5Q9C0A6 1442 aa20.58■□□□□ 0.88
PTPRE-210ENST00000492479 TRAPPC8Q9Y2L5 1435 aa20.58■□□□□ 0.88
PTPRE-210ENST00000492479 HNRNPMP52272 730 aaKnown RBP eCLIP20.57■□□□□ 0.88
PTPRE-210ENST00000492479 SCAPERQ9BY12 1400 aa20.57■□□□□ 0.88
PTPRE-210ENST00000492479 ZNF518AQ6AHZ1 1483 aa20.56■□□□□ 0.88
PTPRE-210ENST00000492479 INO80Q9ULG1 1556 aaPredicted RBP20.56■□□□□ 0.88
PTPRE-210ENST00000492479 POGZQ7Z3K3 1410 aa20.56■□□□□ 0.88
PTPRE-210ENST00000492479 ITGAEP38570 1179 aa20.55■□□□□ 0.88
PTPRE-210ENST00000492479 ZFYVE16Q7Z3T8 1539 aa20.54■□□□□ 0.88
PTPRE-210ENST00000492479 ANKRD30AQ9BXX3 1397 aa20.54■□□□□ 0.88
PTPRE-210ENST00000492479 RICTORQ6R327 1708 aa20.53■□□□□ 0.88
PTPRE-210ENST00000492479 TSPY4P0CV99 314 aa20.53■□□□□ 0.88
PTPRE-210ENST00000492479 TSPY10P0CW01 314 aa20.53■□□□□ 0.88
PTPRE-210ENST00000492479 TSPOAP1O95153 1857 aa20.52■□□□□ 0.87
PTPRE-210ENST00000492479 DENND4BO75064 1496 aaPredicted RBP20.51■□□□□ 0.87
PTPRE-210ENST00000492479 ACIN1Q9UKV3 1341 aaKnown RBP20.51■□□□□ 0.87
PTPRE-210ENST00000492479 MLH3Q9UHC1 1453 aa20.5■□□□□ 0.87
PTPRE-210ENST00000492479 RAB3GAP2Q9H2M9 1393 aa20.5■□□□□ 0.87
PTPRE-210ENST00000492479 ZMYM4Q5VZL5 1548 aa20.49■□□□□ 0.87
PTPRE-210ENST00000492479 ATP7AQ04656 1500 aa20.48■□□□□ 0.87
PTPRE-210ENST00000492479 FRMPD1Q5SYB0 1578 aa20.48■□□□□ 0.87
PTPRE-210ENST00000492479 HECW2Q9P2P5 1572 aa20.46■□□□□ 0.87
PTPRE-210ENST00000492479 KIDINS220Q9ULH0 1771 aa20.46■□□□□ 0.87
PTPRE-210ENST00000492479 CHIC2Q9UKJ5 165 aa20.46■□□□□ 0.87
PTPRE-210ENST00000492479 DUOX2Q9NRD8 1548 aa20.45■□□□□ 0.86
PTPRE-210ENST00000492479 KIF15Q9NS87 1388 aa20.45■□□□□ 0.86
PTPRE-210ENST00000492479 AFAP1Q8N556 730 aa20.44■□□□□ 0.86
PTPRE-210ENST00000492479 SPAG9O60271 1321 aaKnown RBP20.44■□□□□ 0.86
PTPRE-210ENST00000492479 MAGI2Q86UL8 1455 aa20.43■□□□□ 0.86
PTPRE-210ENST00000492479 KDM6BO15054 1643 aa20.42■□□□□ 0.86
PTPRE-210ENST00000492479 RRP7BPQ9NSQ0 103 aa20.42■□□□□ 0.86
PTPRE-210ENST00000492479 ERBINQ96RT1 1412 aa20.42■□□□□ 0.86
PTPRE-210ENST00000492479 ANKRD50Q9ULJ7 1429 aa20.42■□□□□ 0.86
PTPRE-210ENST00000492479 EIF2AK4Q9P2K8 1649 aaKnown RBP20.38■□□□□ 0.85
PTPRE-210ENST00000492479 BCORL1Q5H9F3 1711 aa20.38■□□□□ 0.85
PTPRE-210ENST00000492479 KDM5DQ9BY66 1539 aa20.37■□□□□ 0.85
PTPRE-210ENST00000492479 COL17A1Q9UMD9 1497 aaPredicted RBP20.37■□□□□ 0.85
PTPRE-210ENST00000492479 ABCA6Q8N139 1617 aa20.36■□□□□ 0.85
PTPRE-210ENST00000492479 UNC13BO14795 1591 aa20.36■□□□□ 0.85
PTPRE-210ENST00000492479 DHX57Q6P158 1386 aaKnown RBP20.35■□□□□ 0.85
PTPRE-210ENST00000492479 REREQ9P2R6 1566 aa20.35■□□□□ 0.85
PTPRE-210ENST00000492479 DIP2CQ9Y2E4 1556 aa20.35■□□□□ 0.85
PTPRE-210ENST00000492479 DHX29Q7Z478 1369 aaKnown RBP20.34■□□□□ 0.85
PTPRE-210ENST00000492479 RAPGEF3O95398 923 aa20.33■□□□□ 0.85
PTPRE-210ENST00000492479 DEPDC5O75140 1603 aa20.33■□□□□ 0.84
PTPRE-210ENST00000492479 CLSPNQ9HAW4 1339 aa20.32■□□□□ 0.84
PTPRE-210ENST00000492479 A2MP01023 1474 aa20.3■□□□□ 0.84
PTPRE-210ENST00000492479 ARHGEF40Q8TER5 1519 aa20.29■□□□□ 0.84
PTPRE-210ENST00000492479 RNF17Q9BXT8 1623 aaKnown RBP20.29■□□□□ 0.84
PTPRE-210ENST00000492479 TRHP20396 242 aaPredicted RBP20.28■□□□□ 0.84
PTPRE-210ENST00000492479 VWDEQ8N2E2 1590 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms