RNA–Protein interactions for RNA: ENST00000490808.1

HDAC3-210, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 605 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-210ENST00000490808 NEO1Q92859 1461 aa15.53■□□□□ 0.08
HDAC3-210ENST00000490808 ZEB1P37275 1124 aaPredicted RBP15.52■□□□□ 0.08
HDAC3-210ENST00000490808 HRCP23327 699 aa15.51■□□□□ 0.07
HDAC3-210ENST00000490808 PLCH2O75038 1416 aa15.5■□□□□ 0.07
HDAC3-210ENST00000490808 TTC37Q6PGP7 1564 aa15.49■□□□□ 0.07
HDAC3-210ENST00000490808 SUPT6HQ7KZ85 1726 aaKnown RBP15.49■□□□□ 0.07
HDAC3-210ENST00000490808 LRRC9Q6ZRR7 1453 aa15.47■□□□□ 0.07
HDAC3-210ENST00000490808 KANK4Q5T7N3 995 aaPredicted RBP15.46■□□□□ 0.07
HDAC3-210ENST00000490808 ITSN2Q9NZM3 1697 aa15.46■□□□□ 0.07
HDAC3-210ENST00000490808 PREX2Q70Z35 1606 aa15.46■□□□□ 0.06
HDAC3-210ENST00000490808 FANCAO15360 1455 aa15.46■□□□□ 0.06
HDAC3-210ENST00000490808 EFCAB2Q5VUJ9 269 aa15.45■□□□□ 0.06
HDAC3-210ENST00000490808 CDC42BPAQ5VT25 1732 aa15.44■□□□□ 0.06
HDAC3-210ENST00000490808 CDC42BPBQ9Y5S2 1711 aa15.43■□□□□ 0.06
HDAC3-210ENST00000490808 CCNB3Q8WWL7 1395 aa15.42■□□□□ 0.06
HDAC3-210ENST00000490808 PLEKHH2Q8IVE3 1493 aa15.41■□□□□ 0.06
HDAC3-210ENST00000490808 ARHGAP5Q13017 1502 aa15.41■□□□□ 0.06
HDAC3-210ENST00000490808 AKNAQ7Z591 1439 aa15.41■□□□□ 0.06
HDAC3-210ENST00000490808 RRBP1Q9P2E9 1410 aaKnown RBP15.4■□□□□ 0.06
HDAC3-210ENST00000490808 NCOA2Q15596 1464 aa15.4■□□□□ 0.06
HDAC3-210ENST00000490808 GPATCH8Q9UKJ3 1502 aaKnown RBP15.39■□□□□ 0.05
HDAC3-210ENST00000490808 DENND4BO75064 1496 aaPredicted RBP15.37■□□□□ 0.05
HDAC3-210ENST00000490808 KIAA1107Q9UPP5 1409 aa15.36■□□□□ 0.05
HDAC3-210ENST00000490808 MIA2Q96PC5 1412 aa15.35■□□□□ 0.05
HDAC3-210ENST00000490808 CFDP1Q9UEE9 299 aaPredicted RBP15.35■□□□□ 0.05
HDAC3-210ENST00000490808 RICTORQ6R327 1708 aa15.34■□□□□ 0.05
HDAC3-210ENST00000490808 ZNF518AQ6AHZ1 1483 aa15.34■□□□□ 0.05
HDAC3-210ENST00000490808 MAGI2Q86UL8 1455 aa15.34■□□□□ 0.05
HDAC3-210ENST00000490808 ABCC1P33527 1531 aa15.33■□□□□ 0.05
HDAC3-210ENST00000490808 ZMYM4Q5VZL5 1548 aa15.33■□□□□ 0.05
HDAC3-210ENST00000490808 RSPH4AQ5TD94 716 aa15.33■□□□□ 0.04
HDAC3-210ENST00000490808 SCAPERQ9BY12 1400 aa15.33■□□□□ 0.04
HDAC3-210ENST00000490808 CCER1Q8TC90 406 aaPredicted RBP15.32■□□□□ 0.04
HDAC3-210ENST00000490808 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.32■□□□□ 0.04
HDAC3-210ENST00000490808 MYOM3Q5VTT5 1437 aa15.32■□□□□ 0.04
HDAC3-210ENST00000490808 POGZQ7Z3K3 1410 aa15.32■□□□□ 0.04
HDAC3-210ENST00000490808 PTPRMP28827 1452 aa15.32■□□□□ 0.04
HDAC3-210ENST00000490808 ADAMTSL3P82987 1691 aa15.3■□□□□ 0.04
HDAC3-210ENST00000490808 KDM5CP41229 1560 aa15.29■□□□□ 0.04
HDAC3-210ENST00000490808 SAMD9LQ8IVG5 1584 aa15.29■□□□□ 0.04
HDAC3-210ENST00000490808 LMTK3Q96Q04 1460 aa15.29■□□□□ 0.04
HDAC3-210ENST00000490808 FRMPD1Q5SYB0 1578 aa15.27■□□□□ 0.03
HDAC3-210ENST00000490808 ARHGEF5Q12774 1597 aa15.26■□□□□ 0.03
HDAC3-210ENST00000490808 MLH3Q9UHC1 1453 aa15.26■□□□□ 0.03
HDAC3-210ENST00000490808 CAMSAP2Q08AD1 1489 aa15.25■□□□□ 0.03
HDAC3-210ENST00000490808 SYCP2Q9BX26 1530 aa15.24■□□□□ 0.03
HDAC3-210ENST00000490808 FAM50AQ14320 339 aaKnown RBP15.24■□□□□ 0.03
HDAC3-210ENST00000490808 ZNF777Q9ULD5 760 aaPredicted RBP15.24■□□□□ 0.03
HDAC3-210ENST00000490808 BCORL1Q5H9F3 1711 aa15.23■□□□□ 0.03
HDAC3-210ENST00000490808 ARHGEF40Q8TER5 1519 aa15.23■□□□□ 0.03
HDAC3-210ENST00000490808 RAPGEF3O95398 923 aa15.23■□□□□ 0.03
HDAC3-210ENST00000490808 FGD6Q6ZV73 1430 aa15.23■□□□□ 0.03
HDAC3-210ENST00000490808 ZFYVE16Q7Z3T8 1539 aa15.22■□□□□ 0.03
HDAC3-210ENST00000490808 CCDC141Q6ZP82 1450 aa15.22■□□□□ 0.03
HDAC3-210ENST00000490808 MADDQ8WXG6 1647 aa15.22■□□□□ 0.03
HDAC3-210ENST00000490808 RTEL1-TNFRSF6BF6WH68 1400 aa15.22■□□□□ 0.03
HDAC3-210ENST00000490808 PTPN23Q9H3S7 1636 aa15.21■□□□□ 0.03
HDAC3-210ENST00000490808 TCOF1Q13428 1488 aaKnown RBP15.21■□□□□ 0.03
HDAC3-210ENST00000490808 MBD5Q9P267 1494 aa15.21■□□□□ 0.03
HDAC3-210ENST00000490808 ARID4BQ4LE39 1312 aaPredicted RBP15.21■□□□□ 0.03
HDAC3-210ENST00000490808 ARHGEF12Q9NZN5 1544 aa15.21■□□□□ 0.03
HDAC3-210ENST00000490808 REREQ9P2R6 1566 aa15.2■□□□□ 0.02
HDAC3-210ENST00000490808 TRAPPC8Q9Y2L5 1435 aa15.19■□□□□ 0.02
HDAC3-210ENST00000490808 SPAG9O60271 1321 aaKnown RBP15.18■□□□□ 0.02
HDAC3-210ENST00000490808 TSPY4P0CV99 314 aa15.18■□□□□ 0.02
HDAC3-210ENST00000490808 TSPY10P0CW01 314 aa15.18■□□□□ 0.02
HDAC3-210ENST00000490808 RIMS1Q86UR5 1692 aaKnown RBP15.18■□□□□ 0.02
HDAC3-210ENST00000490808 CLSPNQ9HAW4 1339 aa15.17■□□□□ 0.02
HDAC3-210ENST00000490808 KIDINS220Q9ULH0 1771 aa15.17■□□□□ 0.02
HDAC3-210ENST00000490808 INO80Q9ULG1 1556 aaPredicted RBP15.17■□□□□ 0.02
HDAC3-210ENST00000490808 MAST1Q9Y2H9 1570 aa15.17■□□□□ 0.02
HDAC3-210ENST00000490808 ATP10AO60312 1499 aa15.17■□□□□ 0.02
HDAC3-210ENST00000490808 SHANK2Q9UPX8 1470 aa15.17■□□□□ 0.02
HDAC3-210ENST00000490808 ITGAEP38570 1179 aa15.17■□□□□ 0.02
HDAC3-210ENST00000490808 HNRNPMP52272 730 aaKnown RBP eCLIP15.17■□□□□ 0.02
HDAC3-210ENST00000490808 AFAP1Q8N556 730 aa15.17■□□□□ 0.02
HDAC3-210ENST00000490808 ATP7AQ04656 1500 aa15.17■□□□□ 0.02
HDAC3-210ENST00000490808 C9orf84Q5VXU9 1444 aa15.17■□□□□ 0.02
HDAC3-210ENST00000490808 ACIN1Q9UKV3 1341 aaKnown RBP15.16■□□□□ 0.02
HDAC3-210ENST00000490808 ADGBQ8N7X0 1667 aa15.16■□□□□ 0.02
HDAC3-210ENST00000490808 HSPA2P54652 639 aa15.15■□□□□ 0.02
HDAC3-210ENST00000490808 CERKQ8TCT0 537 aa15.15■□□□□ 0.02
HDAC3-210ENST00000490808 ZNF644Q9H582 1327 aaPredicted RBP15.15■□□□□ 0.02
HDAC3-210ENST00000490808 DNMT1P26358 1616 aaKnown RBP15.14■□□□□ 0.01
HDAC3-210ENST00000490808 CROCC2H7BZ55 1655 aa15.14■□□□□ 0.01
HDAC3-210ENST00000490808 PLPPR3Q6T4P5 718 aa15.14■□□□□ 0.01
HDAC3-210ENST00000490808 DIP2CQ9Y2E4 1556 aa15.14■□□□□ 0.01
HDAC3-210ENST00000490808 SETD5Q9C0A6 1442 aa15.13■□□□□ 0.01
HDAC3-210ENST00000490808 MYT1LQ9UL68 1186 aa15.13■□□□□ 0.01
HDAC3-210ENST00000490808 AGLP35573 1532 aa15.12■□□□□ 0.01
HDAC3-210ENST00000490808 DISP3Q9P2K9 1392 aa15.12■□□□□ 0.01
HDAC3-210ENST00000490808 SOCS7O14512 581 aa15.12■□□□□ 0.01
HDAC3-210ENST00000490808 ILDR2Q71H61 639 aa15.12■□□□□ 0.01
HDAC3-210ENST00000490808 ABCA6Q8N139 1617 aa15.12■□□□□ 0.01
HDAC3-210ENST00000490808 PLXNC1O60486 1568 aa15.11■□□□□ 0.01
HDAC3-210ENST00000490808 YEATS2Q9ULM3 1422 aa15.11■□□□□ 0.01
HDAC3-210ENST00000490808 DAPK1P53355 1430 aa15.09■□□□□ 0.01
HDAC3-210ENST00000490808 ABCC5O15440 1437 aa15.08■□□□□ 0
HDAC3-210ENST00000490808 A2MP01023 1474 aa15.08■□□□□ 0
HDAC3-210ENST00000490808 PPP6R1Q9UPN7 881 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms