RNA–Protein interactions for RNA: ENST00000488848.1

USP11-209, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 2

Gene USP11, Length 904 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-209ENST00000488848 ARHGEF5Q12774 1597 aa16.34■□□□□ 0.21
USP11-209ENST00000488848 DIP2BQ9P265 1576 aa16.34■□□□□ 0.21
USP11-209ENST00000488848 KIAA1107Q9UPP5 1409 aa16.34■□□□□ 0.21
USP11-209ENST00000488848 CAMSAP2Q08AD1 1489 aa16.34■□□□□ 0.21
USP11-209ENST00000488848 PLEKHH2Q8IVE3 1493 aa16.34■□□□□ 0.21
USP11-209ENST00000488848 DNMT1P26358 1616 aaKnown RBP16.34■□□□□ 0.21
USP11-209ENST00000488848 MAP3K4Q9Y6R4 1608 aa16.34■□□□□ 0.21
USP11-209ENST00000488848 AKNAQ7Z591 1439 aa16.33■□□□□ 0.2
USP11-209ENST00000488848 SAMD9LQ8IVG5 1584 aa16.32■□□□□ 0.2
USP11-209ENST00000488848 CFAP74Q9C0B2 1584 aa16.31■□□□□ 0.2
USP11-209ENST00000488848 SHANK2Q9UPX8 1470 aa16.31■□□□□ 0.2
USP11-209ENST00000488848 CROCC2H7BZ55 1655 aa16.3■□□□□ 0.2
USP11-209ENST00000488848 ABCC1P33527 1531 aa16.29■□□□□ 0.2
USP11-209ENST00000488848 MBD5Q9P267 1494 aa16.29■□□□□ 0.2
USP11-209ENST00000488848 CFDP1Q9UEE9 299 aaPredicted RBP16.29■□□□□ 0.2
USP11-209ENST00000488848 ARHGAP5Q13017 1502 aa16.28■□□□□ 0.2
USP11-209ENST00000488848 PCGF6Q9BYE7 350 aa16.27■□□□□ 0.2
USP11-209ENST00000488848 NEO1Q92859 1461 aa16.27■□□□□ 0.19
USP11-209ENST00000488848 MAST1Q9Y2H9 1570 aa16.26■□□□□ 0.19
USP11-209ENST00000488848 ADGRL2O95490 1459 aa16.26■□□□□ 0.19
USP11-209ENST00000488848 DAPK1P53355 1430 aa16.26■□□□□ 0.19
USP11-209ENST00000488848 ROCK1Q13464 1354 aa16.26■□□□□ 0.19
USP11-209ENST00000488848 KIF13AQ9H1H9 1805 aa16.25■□□□□ 0.19
USP11-209ENST00000488848 ABCC5O15440 1437 aa16.25■□□□□ 0.19
USP11-209ENST00000488848 PTPRKQ15262 1439 aa16.24■□□□□ 0.19
USP11-209ENST00000488848 CD109Q6YHK3 1445 aa16.24■□□□□ 0.19
USP11-209ENST00000488848 FANCAO15360 1455 aa16.23■□□□□ 0.19
USP11-209ENST00000488848 CCDC141Q6ZP82 1450 aa16.23■□□□□ 0.19
USP11-209ENST00000488848 RSPH4AQ5TD94 716 aa16.23■□□□□ 0.19
USP11-209ENST00000488848 HFM1A2PYH4 1435 aa16.22■□□□□ 0.19
USP11-209ENST00000488848 ADGBQ8N7X0 1667 aa16.22■□□□□ 0.19
USP11-209ENST00000488848 EFCAB2Q5VUJ9 269 aa16.22■□□□□ 0.19
USP11-209ENST00000488848 KCNH8Q96L42 1107 aa16.22■□□□□ 0.19
USP11-209ENST00000488848 SYCP2Q9BX26 1530 aa16.22■□□□□ 0.19
USP11-209ENST00000488848 PPRC1Q5VV67 1664 aaKnown RBP16.21■□□□□ 0.19
USP11-209ENST00000488848 GCC2Q8IWJ2 1684 aa16.21■□□□□ 0.19
USP11-209ENST00000488848 ARHGEF12Q9NZN5 1544 aa16.2■□□□□ 0.18
USP11-209ENST00000488848 ZNF644Q9H582 1327 aaPredicted RBP16.19■□□□□ 0.18
USP11-209ENST00000488848 PLXNC1O60486 1568 aa16.18■□□□□ 0.18
USP11-209ENST00000488848 HRCP23327 699 aa16.18■□□□□ 0.18
USP11-209ENST00000488848 FAM50AQ14320 339 aaKnown RBP16.18■□□□□ 0.18
USP11-209ENST00000488848 KDM5CP41229 1560 aa16.17■□□□□ 0.18
USP11-209ENST00000488848 TEX14Q8IWB6 1497 aa16.17■□□□□ 0.18
USP11-209ENST00000488848 RTEL1-TNFRSF6BF6WH68 1400 aa16.16■□□□□ 0.18
USP11-209ENST00000488848 ADGRL1O94910 1474 aa16.16■□□□□ 0.18
USP11-209ENST00000488848 NAIPQ13075 1403 aa16.15■□□□□ 0.18
USP11-209ENST00000488848 NCOA1Q15788 1441 aa16.15■□□□□ 0.18
USP11-209ENST00000488848 C9orf84Q5VXU9 1444 aa16.15■□□□□ 0.18
USP11-209ENST00000488848 INO80Q9ULG1 1556 aaPredicted RBP16.15■□□□□ 0.18
USP11-209ENST00000488848 ACIN1Q9UKV3 1341 aaKnown RBP16.14■□□□□ 0.17
USP11-209ENST00000488848 POGZQ7Z3K3 1410 aa16.13■□□□□ 0.17
USP11-209ENST00000488848 ZNF518AQ6AHZ1 1483 aa16.13■□□□□ 0.17
USP11-209ENST00000488848 ZFYVE16Q7Z3T8 1539 aa16.13■□□□□ 0.17
USP11-209ENST00000488848 SETD5Q9C0A6 1442 aa16.12■□□□□ 0.17
USP11-209ENST00000488848 RICTORQ6R327 1708 aa16.11■□□□□ 0.17
USP11-209ENST00000488848 TRAPPC8Q9Y2L5 1435 aa16.11■□□□□ 0.17
USP11-209ENST00000488848 ZMYM4Q5VZL5 1548 aa16.1■□□□□ 0.17
USP11-209ENST00000488848 FAM69CQ0P6D2 419 aa16.1■□□□□ 0.17
USP11-209ENST00000488848 SCAPERQ9BY12 1400 aa16.1■□□□□ 0.17
USP11-209ENST00000488848 MLH3Q9UHC1 1453 aa16.1■□□□□ 0.17
USP11-209ENST00000488848 ANKRD30AQ9BXX3 1397 aa16.09■□□□□ 0.17
USP11-209ENST00000488848 ZNF777Q9ULD5 760 aaPredicted RBP16.08■□□□□ 0.16
USP11-209ENST00000488848 FRMPD1Q5SYB0 1578 aa16.08■□□□□ 0.16
USP11-209ENST00000488848 DENND4BO75064 1496 aaPredicted RBP16.07■□□□□ 0.16
USP11-209ENST00000488848 ATP7AQ04656 1500 aa16.07■□□□□ 0.16
USP11-209ENST00000488848 RAB3GAP2Q9H2M9 1393 aa16.06■□□□□ 0.16
USP11-209ENST00000488848 HECW2Q9P2P5 1572 aa16.05■□□□□ 0.16
USP11-209ENST00000488848 DUOX2Q9NRD8 1548 aa16.05■□□□□ 0.16
USP11-209ENST00000488848 TSPY4P0CV99 314 aa16.05■□□□□ 0.16
USP11-209ENST00000488848 TSPY10P0CW01 314 aa16.05■□□□□ 0.16
USP11-209ENST00000488848 HNRNPMP52272 730 aaKnown RBP eCLIP16.05■□□□□ 0.16
USP11-209ENST00000488848 KIDINS220Q9ULH0 1771 aa16.05■□□□□ 0.16
USP11-209ENST00000488848 MAGI2Q86UL8 1455 aa16.04■□□□□ 0.16
USP11-209ENST00000488848 BCORL1Q5H9F3 1711 aa16.04■□□□□ 0.16
USP11-209ENST00000488848 ERBINQ96RT1 1412 aa16.03■□□□□ 0.16
USP11-209ENST00000488848 KDM5DQ9BY66 1539 aa16.03■□□□□ 0.16
USP11-209ENST00000488848 KIF15Q9NS87 1388 aa16.02■□□□□ 0.16
USP11-209ENST00000488848 EIF2AK4Q9P2K8 1649 aaKnown RBP16.02■□□□□ 0.16
USP11-209ENST00000488848 REREQ9P2R6 1566 aa16.01■□□□□ 0.15
USP11-209ENST00000488848 TSPOAP1O95153 1857 aa16.01■□□□□ 0.15
USP11-209ENST00000488848 ANKRD50Q9ULJ7 1429 aa16.01■□□□□ 0.15
USP11-209ENST00000488848 ITGAEP38570 1179 aa16■□□□□ 0.15
USP11-209ENST00000488848 KDM6BO15054 1643 aa16■□□□□ 0.15
USP11-209ENST00000488848 UNC13BO14795 1591 aa16■□□□□ 0.15
USP11-209ENST00000488848 SPAG9O60271 1321 aaKnown RBP15.99■□□□□ 0.15
USP11-209ENST00000488848 CLSPNQ9HAW4 1339 aa15.99■□□□□ 0.15
USP11-209ENST00000488848 ILDR1Q86SU0 546 aaPredicted RBP15.99■□□□□ 0.15
USP11-209ENST00000488848 DEPDC5O75140 1603 aa15.98■□□□□ 0.15
USP11-209ENST00000488848 AFAP1Q8N556 730 aa15.97■□□□□ 0.15
USP11-209ENST00000488848 ABCA6Q8N139 1617 aa15.97■□□□□ 0.15
USP11-209ENST00000488848 DIP2CQ9Y2E4 1556 aa15.96■□□□□ 0.15
USP11-209ENST00000488848 DHX57Q6P158 1386 aaKnown RBP15.96■□□□□ 0.15
USP11-209ENST00000488848 CHIC2Q9UKJ5 165 aa15.95■□□□□ 0.14
USP11-209ENST00000488848 COL17A1Q9UMD9 1497 aaPredicted RBP15.95■□□□□ 0.14
USP11-209ENST00000488848 RNF17Q9BXT8 1623 aaKnown RBP15.94■□□□□ 0.14
USP11-209ENST00000488848 ARHGEF40Q8TER5 1519 aa15.94■□□□□ 0.14
USP11-209ENST00000488848 DHX29Q7Z478 1369 aaKnown RBP15.93■□□□□ 0.14
USP11-209ENST00000488848 RRP7BPQ9NSQ0 103 aa15.93■□□□□ 0.14
USP11-209ENST00000488848 PRDM15P57071 1507 aaPredicted RBP15.93■□□□□ 0.14
USP11-209ENST00000488848 VWDEQ8N2E2 1590 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms