RNA–Protein interactions for RNA: ENST00000482158.1

SF3B1-210, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 772 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-210ENST00000482158 PLCG2P16885 1265 aa13.29□□□□□ -0.28
SF3B1-210ENST00000482158 DDX27Q96GQ7 796 aaKnown RBP13.29□□□□□ -0.28
SF3B1-210ENST00000482158 GPHNQ9NQX3 736 aaPredicted RBP13.29□□□□□ -0.28
SF3B1-210ENST00000482158 BOLA1Q9Y3E2 137 aa13.29□□□□□ -0.28
SF3B1-210ENST00000482158 SLC39A7Q92504 469 aa13.27□□□□□ -0.29
SF3B1-210ENST00000482158 ARHGEF1Q92888 912 aaKnown RBP13.26□□□□□ -0.29
SF3B1-210ENST00000482158 CAMK2BQ13554 666 aa13.25□□□□□ -0.29
SF3B1-210ENST00000482158 TPRNQ4KMQ1 711 aa13.25□□□□□ -0.29
SF3B1-210ENST00000482158 SEC24BO95487 1268 aa13.23□□□□□ -0.29
SF3B1-210ENST00000482158 C7P10643 843 aa13.23□□□□□ -0.29
SF3B1-210ENST00000482158 DSG2Q14126 1118 aa13.21□□□□□ -0.29
SF3B1-210ENST00000482158 PPP1R15BQ5SWA1 713 aa13.21□□□□□ -0.29
SF3B1-210ENST00000482158 PLSCR2Q9NRY7 297 aa13.21□□□□□ -0.29
SF3B1-210ENST00000482158 METRNQ9UJH8 293 aa13.21□□□□□ -0.29
SF3B1-210ENST00000482158 KIF3CO14782 793 aa13.2□□□□□ -0.3
SF3B1-210ENST00000482158 L3MBTL3Q96JM7 780 aaPredicted RBP13.2□□□□□ -0.3
SF3B1-210ENST00000482158 ARIH1Q9Y4X5 557 aaPredicted RBP13.2□□□□□ -0.3
SF3B1-210ENST00000482158 TMEM92Q6UXU6 159 aa13.19□□□□□ -0.3
SF3B1-210ENST00000482158 C2orf72A6NCS6 295 aa13.17□□□□□ -0.3
SF3B1-210ENST00000482158 FOXK1P85037 733 aa13.17□□□□□ -0.3
SF3B1-210ENST00000482158 LHX8Q68G74 356 aa13.16□□□□□ -0.3
SF3B1-210ENST00000482158 TMC2Q8TDI7 906 aa13.16□□□□□ -0.3
SF3B1-210ENST00000482158 G3V3G9 751 aa13.15□□□□□ -0.3
SF3B1-210ENST00000482158 SEMA3EO15041 775 aa13.13□□□□□ -0.31
SF3B1-210ENST00000482158 EMILIN3Q9NT22 766 aa13.13□□□□□ -0.31
SF3B1-210ENST00000482158 PLPP6Q8IY26 295 aa13.11□□□□□ -0.31
SF3B1-210ENST00000482158 TESPA1A2RU30 521 aaPredicted RBP13.1□□□□□ -0.31
SF3B1-210ENST00000482158 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.1□□□□□ -0.31
SF3B1-210ENST00000482158 DPYSL4O14531 572 aa13.04□□□□□ -0.32
SF3B1-210ENST00000482158 LMOD2Q6P5Q4 547 aa13.04□□□□□ -0.32
SF3B1-210ENST00000482158 C3orf67Q6ZVT6 689 aa12.99□□□□□ -0.33
SF3B1-210ENST00000482158 MLLT3P42568 568 aaPredicted RBP12.98□□□□□ -0.33
SF3B1-210ENST00000482158 PDIA6Q15084 440 aa12.98□□□□□ -0.33
SF3B1-210ENST00000482158 POTEJP0CG39 1038 aa12.97□□□□□ -0.33
SF3B1-210ENST00000482158 POTEB2H3BUK9 544 aa12.95□□□□□ -0.34
SF3B1-210ENST00000482158 OXER1Q8TDS5 423 aa12.95□□□□□ -0.34
SF3B1-210ENST00000482158 SPDYE16A6NNV3 312 aaPredicted RBP12.94□□□□□ -0.34
SF3B1-210ENST00000482158 TULP1O00294 542 aaPredicted RBP12.93□□□□□ -0.34
SF3B1-210ENST00000482158 UPF1Q92900 1129 aaKnown RBP eCLIP12.93□□□□□ -0.34
SF3B1-210ENST00000482158 SMYD5Q6GMV2 418 aa12.91□□□□□ -0.34
SF3B1-210ENST00000482158 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.91□□□□□ -0.34
SF3B1-210ENST00000482158 MAP3K9P80192 1104 aa12.9□□□□□ -0.34
SF3B1-210ENST00000482158 ZC3H15Q8WU90 426 aaKnown RBP12.89□□□□□ -0.35
SF3B1-210ENST00000482158 SLC34A2O95436 690 aa12.87□□□□□ -0.35
SF3B1-210ENST00000482158 PTCD2Q8WV60 388 aaKnown RBP12.87□□□□□ -0.35
SF3B1-210ENST00000482158 RBM26Q5T8P6 1007 aaKnown RBP12.86□□□□□ -0.35
SF3B1-210ENST00000482158 EVI5O60447 810 aa12.81□□□□□ -0.36
SF3B1-210ENST00000482158 PTGER2P43116 358 aa12.81□□□□□ -0.36
SF3B1-210ENST00000482158 GRXCR2A6NFK2 248 aa12.78□□□□□ -0.36
SF3B1-210ENST00000482158 TBC1D12O60347 775 aa12.78□□□□□ -0.36
SF3B1-210ENST00000482158 ZMYND10O75800 440 aa12.78□□□□□ -0.36
SF3B1-210ENST00000482158 OSBPP22059 807 aa12.77□□□□□ -0.37
SF3B1-210ENST00000482158 ANO8Q9HCE9 1232 aaPredicted RBP12.77□□□□□ -0.37
SF3B1-210ENST00000482158 DDX12PQ92771 950 aa12.76□□□□□ -0.37
SF3B1-210ENST00000482158 PCDHGA4Q9Y5G9 962 aa12.75□□□□□ -0.37
SF3B1-210ENST00000482158 KDM4FA0A1W2PPD8 638 aa12.74□□□□□ -0.37
SF3B1-210ENST00000482158 HOXB3P14651 431 aaPredicted RBP12.74□□□□□ -0.37
SF3B1-210ENST00000482158 PRIM1P49642 420 aaKnown RBP12.74□□□□□ -0.37
SF3B1-210ENST00000482158 GPIHBP1Q8IV16 184 aa12.74□□□□□ -0.37
SF3B1-210ENST00000482158 GPR37O15354 613 aa12.73□□□□□ -0.37
SF3B1-210ENST00000482158 SLAIN1Q8ND83 568 aa12.73□□□□□ -0.37
SF3B1-210ENST00000482158 BARGINQ6ZT62 677 aa12.71□□□□□ -0.37
SF3B1-210ENST00000482158 SLC24A3Q9HC58 644 aa12.71□□□□□ -0.37
SF3B1-210ENST00000482158 SCUBE2Q9NQ36 999 aa12.7□□□□□ -0.38
SF3B1-210ENST00000482158 MAMSTRQ6ZN01 415 aa12.69□□□□□ -0.38
SF3B1-210ENST00000482158 KHSRPQ92945 711 aaKnown RBP eCLIP12.66□□□□□ -0.382e-29■■■■■ 41.4
SF3B1-210ENST00000482158 ZNF316A6NFI3 1004 aaPredicted RBP12.65□□□□□ -0.38
SF3B1-210ENST00000482158 DOK7Q18PE1 504 aa12.64□□□□□ -0.39
SF3B1-210ENST00000482158 NUTM2FA1L443 756 aa12.63□□□□□ -0.39
SF3B1-210ENST00000482158 PHF14O94880 888 aa12.63□□□□□ -0.39
SF3B1-210ENST00000482158 ARSIQ5FYB1 569 aa12.63□□□□□ -0.39
SF3B1-210ENST00000482158 GPR153Q6NV75 609 aa12.63□□□□□ -0.39
SF3B1-210ENST00000482158 PCDHGA10Q9Y5H3 936 aa12.63□□□□□ -0.39
SF3B1-210ENST00000482158 OTUD5Q96G74 571 aa12.61□□□□□ -0.39
SF3B1-210ENST00000482158 NUDT7P0C024 238 aa12.6□□□□□ -0.39
SF3B1-210ENST00000482158 ZSWIM6Q9HCJ5 1215 aa12.6□□□□□ -0.39
SF3B1-210ENST00000482158 EN1Q05925 392 aaPredicted RBP12.59□□□□□ -0.39
SF3B1-210ENST00000482158 EPAS1Q99814 870 aa12.59□□□□□ -0.39
SF3B1-210ENST00000482158 BRPF1P55201 1214 aaPredicted RBP12.58□□□□□ -0.4
SF3B1-210ENST00000482158 PTGDRQ13258 359 aa12.57□□□□□ -0.4
SF3B1-210ENST00000482158 JPH4Q96JJ6 628 aa12.57□□□□□ -0.4
SF3B1-210ENST00000482158 FECHP22830 423 aa12.56□□□□□ -0.4
SF3B1-210ENST00000482158 FOSBP53539 338 aa12.56□□□□□ -0.4
SF3B1-210ENST00000482158 CDHR5Q9HBB8 845 aa12.56□□□□□ -0.4
SF3B1-210ENST00000482158 RIMBP2O15034 1052 aa12.55□□□□□ -0.4
SF3B1-210ENST00000482158 TYW1BQ6NUM6 668 aa12.55□□□□□ -0.4
SF3B1-210ENST00000482158 AK7Q96M32 723 aa12.55□□□□□ -0.4
SF3B1-210ENST00000482158 NPDC1Q9NQX5 325 aaPredicted RBP12.55□□□□□ -0.4
SF3B1-210ENST00000482158 GNPATO15228 680 aa12.54□□□□□ -0.4
SF3B1-210ENST00000482158 FCHSD2O94868 740 aa12.54□□□□□ -0.4
SF3B1-210ENST00000482158 KRI1Q8N9T8 703 aaKnown RBP12.54□□□□□ -0.4
SF3B1-210ENST00000482158 RBM33Q96EV2 1170 aaKnown RBP12.54□□□□□ -0.4
SF3B1-210ENST00000482158 HIC1Q14526 733 aa12.53□□□□□ -0.4
SF3B1-210ENST00000482158 TSR1Q2NL82 804 aaKnown RBP12.53□□□□□ -0.4
SF3B1-210ENST00000482158 MAP3K7O43318 606 aa12.52□□□□□ -0.41
SF3B1-210ENST00000482158 ZNF710Q8N1W2 664 aa12.52□□□□□ -0.41
SF3B1-210ENST00000482158 MAP2K5Q13163 448 aa12.5□□□□□ -0.41
SF3B1-210ENST00000482158 ZNF454Q8N9F8 522 aa12.5□□□□□ -0.41
SF3B1-210ENST00000482158 FBXW7Q969H0 707 aa12.5□□□□□ -0.41
SF3B1-210ENST00000482158 LHX6Q9UPM6 363 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms