RNA–Protein interactions for RNA: ENST00000478451.1

GPNMB-210, Transcript of glycoprotein nmb, humanhuman

TSL 4

Gene GPNMB, Length 862 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-210ENST00000478451 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.25□□□□□ -0.77
GPNMB-210ENST00000478451 ZFP91Q96JP5 570 aaPredicted RBP10.25□□□□□ -0.77
GPNMB-210ENST00000478451 TAOK2Q9UL54 1235 aa10.25□□□□□ -0.77
GPNMB-210ENST00000478451 ANKRD13DQ6ZTN6 518 aa10.23□□□□□ -0.77
GPNMB-210ENST00000478451 GPR153Q6NV75 609 aa10.22□□□□□ -0.77
GPNMB-210ENST00000478451 CABP2Q9NPB3 220 aa10.22□□□□□ -0.77
GPNMB-210ENST00000478451 AMER1Q5JTC6 1135 aaPredicted RBP10.21□□□□□ -0.77
GPNMB-210ENST00000478451 LSM11P83369 360 aaKnown RBP eCLIP10.19□□□□□ -0.78
GPNMB-210ENST00000478451 HCSTQ9UBK5 93 aa10.19□□□□□ -0.78
GPNMB-210ENST00000478451 BCL11BQ9C0K0 894 aaPredicted RBP10.18□□□□□ -0.78
GPNMB-210ENST00000478451 STK25O00506 426 aa10.16□□□□□ -0.78
GPNMB-210ENST00000478451 RTN4Q9NQC3 1192 aaKnown RBP10.15□□□□□ -0.78
GPNMB-210ENST00000478451 STK24Q9Y6E0 443 aa10.15□□□□□ -0.78
GPNMB-210ENST00000478451 EFCAB3Q8N7B9 438 aa10.14□□□□□ -0.79
GPNMB-210ENST00000478451 PBX2P40425 430 aa10.11□□□□□ -0.79
GPNMB-210ENST00000478451 ZNF316A6NFI3 1004 aaPredicted RBP10.1□□□□□ -0.79
GPNMB-210ENST00000478451 DCAF8L2P0C7V8 631 aa10.08□□□□□ -0.8
GPNMB-210ENST00000478451 HS6ST3Q8IZP7 471 aa10.08□□□□□ -0.8
GPNMB-210ENST00000478451 SOX12O15370 315 aa10.07□□□□□ -0.8
GPNMB-210ENST00000478451 RGS20O76081 388 aa10.07□□□□□ -0.8
GPNMB-210ENST00000478451 CHGAP10645 457 aaKnown RBP10.07□□□□□ -0.8
GPNMB-210ENST00000478451 TMEM92Q6UXU6 159 aa10.07□□□□□ -0.8
GPNMB-210ENST00000478451 ARSIQ5FYB1 569 aa10.05□□□□□ -0.8
GPNMB-210ENST00000478451 PHF8Q9UPP1 1060 aa10.04□□□□□ -0.8
GPNMB-210ENST00000478451 MICALL2Q8IY33 904 aa10.03□□□□□ -0.8
GPNMB-210ENST00000478451 MFRPQ9BY79 579 aa10.01□□□□□ -0.81
GPNMB-210ENST00000478451 NLRP6P59044 892 aa10□□□□□ -0.81
GPNMB-210ENST00000478451 MS4A4AQ96JQ5 239 aa10□□□□□ -0.81
GPNMB-210ENST00000478451 FBXO22Q8NEZ5 403 aa9.99□□□□□ -0.81
GPNMB-210ENST00000478451 IRX2Q9BZI1 471 aaPredicted RBP9.98□□□□□ -0.81
GPNMB-210ENST00000478451 DNAJC5Q9H3Z4 198 aa9.97□□□□□ -0.81
GPNMB-210ENST00000478451 NKX1-1Q15270 411 aaPredicted RBP9.93□□□□□ -0.82
GPNMB-210ENST00000478451 POTEEQ6S8J3 1075 aa9.93□□□□□ -0.82
GPNMB-210ENST00000478451 KHSRPQ92945 711 aaKnown RBP eCLIP9.93□□□□□ -0.82
GPNMB-210ENST00000478451 IFFO2Q5TF58 517 aa9.92□□□□□ -0.82
GPNMB-210ENST00000478451 ADGRD1Q6QNK2 874 aa9.92□□□□□ -0.82
GPNMB-210ENST00000478451 TK2O00142 265 aa9.88□□□□□ -0.83
GPNMB-210ENST00000478451 AXIN2Q9Y2T1 843 aa9.88□□□□□ -0.83
GPNMB-210ENST00000478451 RYDENQ9NUL5 291 aaKnown RBP9.86□□□□□ -0.83
GPNMB-210ENST00000478451 ARHGAP33O14559 1287 aa9.85□□□□□ -0.83
GPNMB-210ENST00000478451 PPP1R37O75864 691 aa9.85□□□□□ -0.83
GPNMB-210ENST00000478451 HRO43593 1189 aa9.84□□□□□ -0.83
GPNMB-210ENST00000478451 NUDT7P0C024 238 aa9.83□□□□□ -0.84
GPNMB-210ENST00000478451 BBXQ8WY36 941 aaPredicted RBP9.83□□□□□ -0.84
GPNMB-210ENST00000478451 LHX6Q9UPM6 363 aa9.83□□□□□ -0.84
GPNMB-210ENST00000478451 PSDA5PKW4 1024 aaPredicted RBP9.81□□□□□ -0.84
GPNMB-210ENST00000478451 GTPBP6O43824 516 aaPredicted RBP9.81□□□□□ -0.84
GPNMB-210ENST00000478451 SLC34A2O95436 690 aa9.78□□□□□ -0.84
GPNMB-210ENST00000478451 KCTD12Q96CX2 325 aaKnown RBP9.78□□□□□ -0.84
GPNMB-210ENST00000478451 A0A0G2JS52 829 aa9.77□□□□□ -0.85
GPNMB-210ENST00000478451 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.76□□□□□ -0.85
GPNMB-210ENST00000478451 PCDHGA4Q9Y5G9 962 aa9.74□□□□□ -0.85
GPNMB-210ENST00000478451 KIF3CO14782 793 aa9.73□□□□□ -0.85
GPNMB-210ENST00000478451 STAC3Q96MF2 364 aa9.72□□□□□ -0.85
GPNMB-210ENST00000478451 C2orf72A6NCS6 295 aa9.7□□□□□ -0.86
GPNMB-210ENST00000478451 SPRYD3Q8NCJ5 442 aa9.7□□□□□ -0.86
GPNMB-210ENST00000478451 TMC2Q8TDI7 906 aa9.7□□□□□ -0.86
GPNMB-210ENST00000478451 DMRTA1Q5VZB9 504 aa9.69□□□□□ -0.86
GPNMB-210ENST00000478451 Q6ZNB5 142 aa9.68□□□□□ -0.86
GPNMB-210ENST00000478451 PAXIP1Q6ZW49 1069 aaPredicted RBP9.68□□□□□ -0.86
GPNMB-210ENST00000478451 CFAP44Q96MT7 982 aa9.67□□□□□ -0.86
GPNMB-210ENST00000478451 PSEN2P49810 448 aa9.64□□□□□ -0.87
GPNMB-210ENST00000478451 PTPN5P54829 565 aa9.64□□□□□ -0.87
GPNMB-210ENST00000478451 GPHNQ9NQX3 736 aaPredicted RBP9.64□□□□□ -0.87
GPNMB-210ENST00000478451 KDM4FA0A1W2PPD8 638 aa9.62□□□□□ -0.87
GPNMB-210ENST00000478451 CRISPLD2Q9H0B8 497 aa9.62□□□□□ -0.87
GPNMB-210ENST00000478451 NCKAP5LQ9HCH0 1330 aa9.61□□□□□ -0.87
GPNMB-210ENST00000478451 FOXK1P85037 733 aa9.6□□□□□ -0.87
GPNMB-210ENST00000478451 CADPS2Q86UW7 1296 aa9.6□□□□□ -0.87
GPNMB-210ENST00000478451 PDE4AP27815 886 aa9.59□□□□□ -0.87
GPNMB-210ENST00000478451 DSG2Q14126 1118 aa9.59□□□□□ -0.87
GPNMB-210ENST00000478451 LAPTM4AQ15012 233 aa9.58□□□□□ -0.88
GPNMB-210ENST00000478451 PPP4R3BQ5MIZ7 849 aa9.58□□□□□ -0.88
GPNMB-210ENST00000478451 THSD4Q6ZMP0 1018 aa9.58□□□□□ -0.88
GPNMB-210ENST00000478451 KCNH8Q96L42 1107 aa9.58□□□□□ -0.88
GPNMB-210ENST00000478451 PLPP6Q8IY26 295 aa9.57□□□□□ -0.88
GPNMB-210ENST00000478451 PPP1R15BQ5SWA1 713 aa9.56□□□□□ -0.88
GPNMB-210ENST00000478451 VPS9D1Q9Y2B5 631 aa9.56□□□□□ -0.88
GPNMB-210ENST00000478451 LARP6Q9BRS8 491 aaKnown RBP9.55□□□□□ -0.88
GPNMB-210ENST00000478451 DDX27Q96GQ7 796 aaKnown RBP9.54□□□□□ -0.88
GPNMB-210ENST00000478451 SLC4A5Q9BY07 1137 aa9.54□□□□□ -0.88
GPNMB-210ENST00000478451 MFSD10Q14728 455 aa9.53□□□□□ -0.88
GPNMB-210ENST00000478451 PTCD2Q8WV60 388 aaKnown RBP9.53□□□□□ -0.88
GPNMB-210ENST00000478451 ITGBL1O95965 494 aaPredicted RBP9.5□□□□□ -0.89
GPNMB-210ENST00000478451 PLCB2Q00722 1185 aa9.5□□□□□ -0.89
GPNMB-210ENST00000478451 BHMG1C9JSJ3 638 aaPredicted RBP9.49□□□□□ -0.89
GPNMB-210ENST00000478451 TRAF7Q6Q0C0 670 aa9.49□□□□□ -0.89
GPNMB-210ENST00000478451 KCNK17Q96T54 332 aa9.49□□□□□ -0.89
GPNMB-210ENST00000478451 LCE2BO14633 110 aa9.47□□□□□ -0.89
GPNMB-210ENST00000478451 TSHZ2Q9NRE2 1034 aa9.47□□□□□ -0.89
GPNMB-210ENST00000478451 WNT2BQ93097 391 aa9.46□□□□□ -0.9
GPNMB-210ENST00000478451 GOLGA8CPA6NN73 597 aa9.45□□□□□ -0.9
GPNMB-210ENST00000478451 UPF1Q92900 1129 aaKnown RBP eCLIP9.45□□□□□ -0.9
GPNMB-210ENST00000478451 TBC1D12O60347 775 aa9.44□□□□□ -0.9
GPNMB-210ENST00000478451 OXER1Q8TDS5 423 aa9.44□□□□□ -0.9
GPNMB-210ENST00000478451 MRPL50Q8N5N7 158 aaKnown RBP9.41□□□□□ -0.9
GPNMB-210ENST00000478451 EMILIN3Q9NT22 766 aa9.41□□□□□ -0.9
GPNMB-210ENST00000478451 CAMK2BQ13554 666 aa9.4□□□□□ -0.9
GPNMB-210ENST00000478451 WDR70Q9NW82 654 aa9.4□□□□□ -0.9
GPNMB-210ENST00000478451 BCL2L12Q9HB09 334 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms