RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-209ENST00000472044 CAMK2BQ13554 666 aa8.85□□□□□ -0.99
PTCD3-209ENST00000472044 SLC39A7Q92504 469 aa8.85□□□□□ -0.99
PTCD3-209ENST00000472044 BOLA1Q9Y3E2 137 aa8.85□□□□□ -0.99
PTCD3-209ENST00000472044 ARIH1Q9Y4X5 557 aaPredicted RBP8.85□□□□□ -0.99
PTCD3-209ENST00000472044 C7P10643 843 aa8.84□□□□□ -0.99
PTCD3-209ENST00000472044 L3MBTL3Q96JM7 780 aaPredicted RBP8.84□□□□□ -0.99
PTCD3-209ENST00000472044 POTEIP0CG38 1075 aa8.82□□□□□ -1
PTCD3-209ENST00000472044 COLQQ9Y215 455 aaPredicted RBP8.82□□□□□ -1
PTCD3-209ENST00000472044 POTEFA5A3E0 1075 aa8.81□□□□□ -1
PTCD3-209ENST00000472044 G3V3G9 751 aa8.81□□□□□ -1
PTCD3-209ENST00000472044 SEC24BO95487 1268 aa8.81□□□□□ -1
PTCD3-209ENST00000472044 TPRNQ4KMQ1 711 aa8.81□□□□□ -1
PTCD3-209ENST00000472044 PRKCSHP14314 528 aaPredicted RBP8.8□□□□□ -1
PTCD3-209ENST00000472044 FOXK1P85037 733 aa8.8□□□□□ -1
PTCD3-209ENST00000472044 PPP1R15BQ5SWA1 713 aa8.8□□□□□ -1
PTCD3-209ENST00000472044 KIF3CO14782 793 aa8.79□□□□□ -1
PTCD3-209ENST00000472044 TMC2Q8TDI7 906 aa8.78□□□□□ -1
PTCD3-209ENST00000472044 METRNQ9UJH8 293 aa8.78□□□□□ -1
PTCD3-209ENST00000472044 DSG2Q14126 1118 aa8.77□□□□□ -1.01
PTCD3-209ENST00000472044 C2orf72A6NCS6 295 aa8.75□□□□□ -1.01
PTCD3-209ENST00000472044 TESPA1A2RU30 521 aaPredicted RBP8.74□□□□□ -1.01
PTCD3-209ENST00000472044 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.74□□□□□ -1.01
PTCD3-209ENST00000472044 TMEM92Q6UXU6 159 aa8.73□□□□□ -1.01
PTCD3-209ENST00000472044 SEMA3EO15041 775 aa8.72□□□□□ -1.01
PTCD3-209ENST00000472044 PLPP6Q8IY26 295 aa8.72□□□□□ -1.01
PTCD3-209ENST00000472044 EMILIN3Q9NT22 766 aa8.72□□□□□ -1.01
PTCD3-209ENST00000472044 TULP1O00294 542 aaPredicted RBP8.71□□□□□ -1.02
PTCD3-209ENST00000472044 LHX8Q68G74 356 aa8.71□□□□□ -1.02
PTCD3-209ENST00000472044 LMOD2Q6P5Q4 547 aa8.69□□□□□ -1.02
PTCD3-209ENST00000472044 SPDYE16A6NNV3 312 aaPredicted RBP8.68□□□□□ -1.02
PTCD3-209ENST00000472044 PDIA6Q15084 440 aa8.67□□□□□ -1.02
PTCD3-209ENST00000472044 SMYD5Q6GMV2 418 aa8.67□□□□□ -1.02
PTCD3-209ENST00000472044 DPYSL4O14531 572 aa8.66□□□□□ -1.02
PTCD3-209ENST00000472044 C3orf67Q6ZVT6 689 aa8.66□□□□□ -1.02
PTCD3-209ENST00000472044 OXER1Q8TDS5 423 aa8.63□□□□□ -1.03
PTCD3-209ENST00000472044 SLC34A2O95436 690 aa8.62□□□□□ -1.03
PTCD3-209ENST00000472044 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.62□□□□□ -1.03
PTCD3-209ENST00000472044 MAP3K9P80192 1104 aa8.61□□□□□ -1.03
PTCD3-209ENST00000472044 MLLT3P42568 568 aaPredicted RBP8.6□□□□□ -1.03
PTCD3-209ENST00000472044 PTCD2Q8WV60 388 aaKnown RBP8.6□□□□□ -1.03
PTCD3-209ENST00000472044 TBC1D12O60347 775 aa8.58□□□□□ -1.04
PTCD3-209ENST00000472044 PTGER2P43116 358 aa8.58□□□□□ -1.04
PTCD3-209ENST00000472044 ZC3H15Q8WU90 426 aaKnown RBP8.58□□□□□ -1.04
PTCD3-209ENST00000472044 UPF1Q92900 1129 aaKnown RBP eCLIP8.57□□□□□ -1.04
PTCD3-209ENST00000472044 POTEJP0CG39 1038 aa8.56□□□□□ -1.04
PTCD3-209ENST00000472044 POTEB2H3BUK9 544 aa8.55□□□□□ -1.04
PTCD3-209ENST00000472044 ANO8Q9HCE9 1232 aaPredicted RBP8.54□□□□□ -1.04
PTCD3-209ENST00000472044 EVI5O60447 810 aa8.53□□□□□ -1.04
PTCD3-209ENST00000472044 ZMYND10O75800 440 aa8.53□□□□□ -1.04
PTCD3-209ENST00000472044 RBM26Q5T8P6 1007 aaKnown RBP8.53□□□□□ -1.04
PTCD3-209ENST00000472044 MAMSTRQ6ZN01 415 aa8.51□□□□□ -1.05
PTCD3-209ENST00000472044 GPIHBP1Q8IV16 184 aa8.5□□□□□ -1.05
PTCD3-209ENST00000472044 ZNF316A6NFI3 1004 aaPredicted RBP8.49□□□□□ -1.05
PTCD3-209ENST00000472044 GRXCR2A6NFK2 248 aa8.49□□□□□ -1.05
PTCD3-209ENST00000472044 OSBPP22059 807 aa8.49□□□□□ -1.05
PTCD3-209ENST00000472044 BARGINQ6ZT62 677 aa8.49□□□□□ -1.05
PTCD3-209ENST00000472044 KDM4FA0A1W2PPD8 638 aa8.48□□□□□ -1.05
PTCD3-209ENST00000472044 SCUBE2Q9NQ36 999 aa8.48□□□□□ -1.05
PTCD3-209ENST00000472044 PCDHGA4Q9Y5G9 962 aa8.48□□□□□ -1.05
PTCD3-209ENST00000472044 SLAIN1Q8ND83 568 aa8.46□□□□□ -1.06
PTCD3-209ENST00000472044 DDX12PQ92771 950 aa8.46□□□□□ -1.06
PTCD3-209ENST00000472044 GPR37O15354 613 aa8.45□□□□□ -1.06
PTCD3-209ENST00000472044 HOXB3P14651 431 aaPredicted RBP8.45□□□□□ -1.06
PTCD3-209ENST00000472044 DOK7Q18PE1 504 aa8.45□□□□□ -1.06
PTCD3-209ENST00000472044 ZSWIM6Q9HCJ5 1215 aa8.45□□□□□ -1.06
PTCD3-209ENST00000472044 PLSCR2Q9NRY7 297 aa8.45□□□□□ -1.06
PTCD3-209ENST00000472044 PHF14O94880 888 aa8.44□□□□□ -1.06
PTCD3-209ENST00000472044 EPAS1Q99814 870 aa8.44□□□□□ -1.06
PTCD3-209ENST00000472044 SLC24A3Q9HC58 644 aa8.44□□□□□ -1.06
PTCD3-209ENST00000472044 RIMBP2O15034 1052 aa8.41□□□□□ -1.06
PTCD3-209ENST00000472044 PRIM1P49642 420 aaKnown RBP8.41□□□□□ -1.06
PTCD3-209ENST00000472044 GPR153Q6NV75 609 aa8.41□□□□□ -1.06
PTCD3-209ENST00000472044 NUTM2FA1L443 756 aa8.4□□□□□ -1.06
PTCD3-209ENST00000472044 JPH4Q96JJ6 628 aa8.4□□□□□ -1.06
PTCD3-209ENST00000472044 PCDHGA10Q9Y5H3 936 aa8.4□□□□□ -1.06
PTCD3-209ENST00000472044 FCHSD2O94868 740 aa8.39□□□□□ -1.07
PTCD3-209ENST00000472044 EN1Q05925 392 aaPredicted RBP8.39□□□□□ -1.07
PTCD3-209ENST00000472044 HIC1Q14526 733 aa8.39□□□□□ -1.07
PTCD3-209ENST00000472044 AK7Q96M32 723 aa8.39□□□□□ -1.07
PTCD3-209ENST00000472044 SNPHO15079 494 aa8.38□□□□□ -1.07
PTCD3-209ENST00000472044 TYW1BQ6NUM6 668 aa8.38□□□□□ -1.07
PTCD3-209ENST00000472044 KRI1Q8N9T8 703 aaKnown RBP8.38□□□□□ -1.07
PTCD3-209ENST00000472044 FBXW7Q969H0 707 aa8.38□□□□□ -1.07
PTCD3-209ENST00000472044 MINK1Q8N4C8 1332 aaPredicted RBP8.37□□□□□ -1.07
PTCD3-209ENST00000472044 GNPATO15228 680 aa8.37□□□□□ -1.07
PTCD3-209ENST00000472044 FOSBP53539 338 aa8.37□□□□□ -1.07
PTCD3-209ENST00000472044 BRPF1P55201 1214 aaPredicted RBP8.37□□□□□ -1.07
PTCD3-209ENST00000472044 PTGDRQ13258 359 aa8.37□□□□□ -1.07
PTCD3-209ENST00000472044 ARSIQ5FYB1 569 aa8.37□□□□□ -1.07
PTCD3-209ENST00000472044 NUDT7P0C024 238 aa8.36□□□□□ -1.07
PTCD3-209ENST00000472044 ZNF710Q8N1W2 664 aa8.36□□□□□ -1.07
PTCD3-209ENST00000472044 MAP2K5Q13163 448 aa8.35□□□□□ -1.07
PTCD3-209ENST00000472044 KHSRPQ92945 711 aaKnown RBP eCLIP8.35□□□□□ -1.071e-8■□□□□ 10.5
PTCD3-209ENST00000472044 OTUD5Q96G74 571 aa8.35□□□□□ -1.07
PTCD3-209ENST00000472044 NPDC1Q9NQX5 325 aaPredicted RBP8.35□□□□□ -1.07
PTCD3-209ENST00000472044 IRF6O14896 467 aa8.33□□□□□ -1.08
PTCD3-209ENST00000472044 MAP3K7O43318 606 aa8.33□□□□□ -1.08
PTCD3-209ENST00000472044 ZDHHC16Q969W1 377 aa8.33□□□□□ -1.08
PTCD3-209ENST00000472044 TRIM66O15016 1216 aa8.32□□□□□ -1.08
PTCD3-209ENST00000472044 HOXB1P14653 301 aaPredicted RBP8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms