RNA–Protein interactions for RNA: ENST00000471987.1

CD46-213, Transcript of CD46 molecule, humanhuman

TSL 3

Gene CD46, Length 572 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-213ENST00000471987 AMER1Q5JTC6 1135 aaPredicted RBP14.23□□□□□ -0.13
CD46-213ENST00000471987 NKX1-1Q15270 411 aaPredicted RBP14.22□□□□□ -0.13
CD46-213ENST00000471987 ZNF710Q8N1W2 664 aa14.2□□□□□ -0.14
CD46-213ENST00000471987 RIMBP2O15034 1052 aa14.19□□□□□ -0.14
CD46-213ENST00000471987 MARVELD3Q96A59 401 aa14.18□□□□□ -0.14
CD46-213ENST00000471987 KIF3CO14782 793 aa14.15□□□□□ -0.14
CD46-213ENST00000471987 C2orf72A6NCS6 295 aa14.14□□□□□ -0.15
CD46-213ENST00000471987 EMP3P54852 163 aa14.14□□□□□ -0.15
CD46-213ENST00000471987 TMC2Q8TDI7 906 aa14.14□□□□□ -0.15
CD46-213ENST00000471987 HOXB1P14653 301 aaPredicted RBP14.11□□□□□ -0.15
CD46-213ENST00000471987 CDAN1Q8IWY9 1227 aa14.11□□□□□ -0.15
CD46-213ENST00000471987 ZSWIM6Q9HCJ5 1215 aa14.11□□□□□ -0.15
CD46-213ENST00000471987 RTN4Q9NQC3 1192 aaKnown RBP14.11□□□□□ -0.15
CD46-213ENST00000471987 GTPBP6O43824 516 aaPredicted RBP14.06□□□□□ -0.16
CD46-213ENST00000471987 FAM205CA6NFA0 338 aa14.04□□□□□ -0.16
CD46-213ENST00000471987 GPR153Q6NV75 609 aa14.02□□□□□ -0.17
CD46-213ENST00000471987 HS3ST6Q96QI5 342 aa14.01□□□□□ -0.17
CD46-213ENST00000471987 GPHNQ9NQX3 736 aaPredicted RBP14.01□□□□□ -0.17
CD46-213ENST00000471987 ERBB3P21860 1342 aa13.98□□□□□ -0.17
CD46-213ENST00000471987 ARSIQ5FYB1 569 aa13.98□□□□□ -0.17
CD46-213ENST00000471987 SLC34A2O95436 690 aa13.97□□□□□ -0.17
CD46-213ENST00000471987 FOXK1P85037 733 aa13.97□□□□□ -0.17
CD46-213ENST00000471987 BBXQ8WY36 941 aaPredicted RBP13.96□□□□□ -0.17
CD46-213ENST00000471987 POTEB3A0JP26 581 aa13.95□□□□□ -0.18
CD46-213ENST00000471987 POTEBQ6S5H4 581 aa13.95□□□□□ -0.18
CD46-213ENST00000471987 PLPP6Q8IY26 295 aa13.93□□□□□ -0.18
CD46-213ENST00000471987 DSG2Q14126 1118 aa13.91□□□□□ -0.18
CD46-213ENST00000471987 CRISPLD2Q9H0B8 497 aa13.91□□□□□ -0.18
CD46-213ENST00000471987 VARS2Q5ST30 1063 aaKnown RBP13.9□□□□□ -0.18
CD46-213ENST00000471987 KHSRPQ92945 711 aaKnown RBP eCLIP13.9□□□□□ -0.185e-7■■□□□ 14.1
CD46-213ENST00000471987 PCDHGA4Q9Y5G9 962 aa13.9□□□□□ -0.18
CD46-213ENST00000471987 PDE4AP27815 886 aa13.88□□□□□ -0.19
CD46-213ENST00000471987 MMRN1Q13201 1228 aa13.87□□□□□ -0.19
CD46-213ENST00000471987 ZNF316A6NFI3 1004 aaPredicted RBP13.85□□□□□ -0.19
CD46-213ENST00000471987 NUDT7P0C024 238 aa13.85□□□□□ -0.19
CD46-213ENST00000471987 PTCD2Q8WV60 388 aaKnown RBP13.85□□□□□ -0.19
CD46-213ENST00000471987 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.85□□□□□ -0.19
CD46-213ENST00000471987 NCKAP5LQ9HCH0 1330 aa13.85□□□□□ -0.19
CD46-213ENST00000471987 PPP1R15BQ5SWA1 713 aa13.83□□□□□ -0.2
CD46-213ENST00000471987 KRTAP3-3Q9BYR6 98 aa13.82□□□□□ -0.2
CD46-213ENST00000471987 KRTAP3-2Q9BYR7 98 aa13.82□□□□□ -0.2
CD46-213ENST00000471987 ZNF687Q8N1G0 1237 aa13.81□□□□□ -0.2
CD46-213ENST00000471987 TBC1D12O60347 775 aa13.8□□□□□ -0.2
CD46-213ENST00000471987 SPRYD3Q8NCJ5 442 aa13.8□□□□□ -0.2
CD46-213ENST00000471987 LARP6Q9BRS8 491 aaKnown RBP13.8□□□□□ -0.2
CD46-213ENST00000471987 SPNS2Q8IVW8 549 aa13.78□□□□□ -0.2
CD46-213ENST00000471987 DDX27Q96GQ7 796 aaKnown RBP13.77□□□□□ -0.21
CD46-213ENST00000471987 LHX6Q9UPM6 363 aa13.77□□□□□ -0.21
CD46-213ENST00000471987 CADPS2Q86UW7 1296 aa13.75□□□□□ -0.21
CD46-213ENST00000471987 MFSD10Q14728 455 aa13.74□□□□□ -0.21
CD46-213ENST00000471987 OXER1Q8TDS5 423 aa13.74□□□□□ -0.21
CD46-213ENST00000471987 KDM4FA0A1W2PPD8 638 aa13.73□□□□□ -0.21
CD46-213ENST00000471987 PSDA5PKW4 1024 aaPredicted RBP13.72□□□□□ -0.21
CD46-213ENST00000471987 UPF1Q92900 1129 aaKnown RBP eCLIP13.72□□□□□ -0.21
CD46-213ENST00000471987 PAXIP1Q6ZW49 1069 aaPredicted RBP13.69□□□□□ -0.22
CD46-213ENST00000471987 CFAP44Q96MT7 982 aa13.68□□□□□ -0.22
CD46-213ENST00000471987 PBX2P40425 430 aa13.65□□□□□ -0.22
CD46-213ENST00000471987 PPP4R3BQ5MIZ7 849 aa13.61□□□□□ -0.23
CD46-213ENST00000471987 MAP3K9P80192 1104 aa13.6□□□□□ -0.23
CD46-213ENST00000471987 LSM11P83369 360 aaKnown RBP eCLIP13.59□□□□□ -0.23
CD46-213ENST00000471987 EMILIN3Q9NT22 766 aa13.58□□□□□ -0.24
CD46-213ENST00000471987 EVI5O60447 810 aa13.57□□□□□ -0.24
CD46-213ENST00000471987 ANKRD13DQ6ZTN6 518 aa13.57□□□□□ -0.24
CD46-213ENST00000471987 ARHGAP33O14559 1287 aa13.56□□□□□ -0.24
CD46-213ENST00000471987 POTEEQ6S8J3 1075 aa13.56□□□□□ -0.24
CD46-213ENST00000471987 ANO8Q9HCE9 1232 aaPredicted RBP13.56□□□□□ -0.24
CD46-213ENST00000471987 AXIN2Q9Y2T1 843 aa13.56□□□□□ -0.24
CD46-213ENST00000471987 CAMK2BQ13554 666 aa13.55□□□□□ -0.24
CD46-213ENST00000471987 ZNF454Q8N9F8 522 aa13.53□□□□□ -0.24
CD46-213ENST00000471987 PTGER2P43116 358 aa13.52□□□□□ -0.25
CD46-213ENST00000471987 FOSBP53539 338 aa13.5□□□□□ -0.25
CD46-213ENST00000471987 JPH4Q96JJ6 628 aa13.49□□□□□ -0.25
CD46-213ENST00000471987 KCNH8Q96L42 1107 aa13.49□□□□□ -0.25
CD46-213ENST00000471987 MYT1LQ9UL68 1186 aa13.48□□□□□ -0.25
CD46-213ENST00000471987 WDR70Q9NW82 654 aa13.47□□□□□ -0.25
CD46-213ENST00000471987 PSEN2P49810 448 aa13.46□□□□□ -0.25
CD46-213ENST00000471987 DPYSL4O14531 572 aa13.45□□□□□ -0.26
CD46-213ENST00000471987 BCL2L12Q9HB09 334 aa13.45□□□□□ -0.26
CD46-213ENST00000471987 RNF166Q96A37 237 aaPredicted RBP13.44□□□□□ -0.26
CD46-213ENST00000471987 KCNK17Q96T54 332 aa13.44□□□□□ -0.26
CD46-213ENST00000471987 ADGRD1Q6QNK2 874 aa13.43□□□□□ -0.26
CD46-213ENST00000471987 ZDHHC16Q969W1 377 aa13.43□□□□□ -0.26
CD46-213ENST00000471987 TK2O00142 265 aa13.42□□□□□ -0.26
CD46-213ENST00000471987 E2F4Q16254 413 aa13.42□□□□□ -0.26
CD46-213ENST00000471987 DMRTA1Q5VZB9 504 aa13.42□□□□□ -0.26
CD46-213ENST00000471987 PTPREP23469 700 aa13.4□□□□□ -0.26
CD46-213ENST00000471987 PCDHGA10Q9Y5H3 936 aa13.38□□□□□ -0.27
CD46-213ENST00000471987 PHF14O94880 888 aa13.37□□□□□ -0.27
CD46-213ENST00000471987 ADAM33Q9BZ11 813 aa13.37□□□□□ -0.27
CD46-213ENST00000471987 TSHZ2Q9NRE2 1034 aa13.37□□□□□ -0.27
CD46-213ENST00000471987 TYW1BQ6NUM6 668 aa13.35□□□□□ -0.27
CD46-213ENST00000471987 FBXW7Q969H0 707 aa13.35□□□□□ -0.27
CD46-213ENST00000471987 PDIA6Q15084 440 aa13.34□□□□□ -0.27
CD46-213ENST00000471987 SPDYE16A6NNV3 312 aaPredicted RBP13.33□□□□□ -0.28
CD46-213ENST00000471987 EPAS1Q99814 870 aa13.33□□□□□ -0.28
CD46-213ENST00000471987 ARIH1Q9Y4X5 557 aaPredicted RBP13.33□□□□□ -0.28
CD46-213ENST00000471987 HRO43593 1189 aa13.32□□□□□ -0.28
CD46-213ENST00000471987 SLC4A5Q9BY07 1137 aa13.32□□□□□ -0.28
CD46-213ENST00000471987 VPS9D1Q9Y2B5 631 aa13.31□□□□□ -0.28
CD46-213ENST00000471987 STAC3Q96MF2 364 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms