RNA–Protein interactions for RNA: ENST00000468872.5

LSM5-209, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM5, Length 636 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-209ENST00000468872 KIF3CO14782 793 aa13.4□□□□□ -0.26
LSM5-209ENST00000468872 DOK7Q18PE1 504 aa13.4□□□□□ -0.26
LSM5-209ENST00000468872 MARVELD3Q96A59 401 aa13.39□□□□□ -0.27
LSM5-209ENST00000468872 C2orf72A6NCS6 295 aa13.38□□□□□ -0.27
LSM5-209ENST00000468872 ZNF710Q8N1W2 664 aa13.37□□□□□ -0.27
LSM5-209ENST00000468872 GTPBP6O43824 516 aaPredicted RBP13.35□□□□□ -0.27
LSM5-209ENST00000468872 PCDH10Q9P2E7 1040 aa13.35□□□□□ -0.27
LSM5-209ENST00000468872 RIMBP2O15034 1052 aa13.34□□□□□ -0.27
LSM5-209ENST00000468872 TMC2Q8TDI7 906 aa13.34□□□□□ -0.27
LSM5-209ENST00000468872 EMP3P54852 163 aa13.33□□□□□ -0.28
LSM5-209ENST00000468872 HOXB1P14653 301 aaPredicted RBP13.31□□□□□ -0.28
LSM5-209ENST00000468872 ZSWIM6Q9HCJ5 1215 aa13.29□□□□□ -0.28
LSM5-209ENST00000468872 CDAN1Q8IWY9 1227 aa13.28□□□□□ -0.28
LSM5-209ENST00000468872 GPR153Q6NV75 609 aa13.25□□□□□ -0.29
LSM5-209ENST00000468872 GPHNQ9NQX3 736 aaPredicted RBP13.25□□□□□ -0.29
LSM5-209ENST00000468872 FAM205CA6NFA0 338 aa13.24□□□□□ -0.29
LSM5-209ENST00000468872 BBXQ8WY36 941 aaPredicted RBP13.24□□□□□ -0.29
LSM5-209ENST00000468872 HS3ST6Q96QI5 342 aa13.22□□□□□ -0.29
LSM5-209ENST00000468872 POTEB3A0JP26 581 aa13.21□□□□□ -0.29
LSM5-209ENST00000468872 FOXK1P85037 733 aa13.21□□□□□ -0.29
LSM5-209ENST00000468872 ARSIQ5FYB1 569 aa13.21□□□□□ -0.29
LSM5-209ENST00000468872 POTEBQ6S5H4 581 aa13.21□□□□□ -0.29
LSM5-209ENST00000468872 SLC34A2O95436 690 aa13.2□□□□□ -0.3
LSM5-209ENST00000468872 DSG2Q14126 1118 aa13.19□□□□□ -0.3
LSM5-209ENST00000468872 PLPP6Q8IY26 295 aa13.17□□□□□ -0.3
LSM5-209ENST00000468872 KHSRPQ92945 711 aaKnown RBP eCLIP13.17□□□□□ -0.3
LSM5-209ENST00000468872 CRISPLD2Q9H0B8 497 aa13.17□□□□□ -0.3
LSM5-209ENST00000468872 ERBB3P21860 1342 aa13.16□□□□□ -0.3
LSM5-209ENST00000468872 PLSCR2Q9NRY7 297 aa13.16□□□□□ -0.3
LSM5-209ENST00000468872 NCKAP5LQ9HCH0 1330 aa13.14□□□□□ -0.31
LSM5-209ENST00000468872 PCDHGA4Q9Y5G9 962 aa13.14□□□□□ -0.31
LSM5-209ENST00000468872 PDE4AP27815 886 aa13.12□□□□□ -0.31
LSM5-209ENST00000468872 VARS2Q5ST30 1063 aaKnown RBP13.12□□□□□ -0.31
LSM5-209ENST00000468872 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.11□□□□□ -0.31
LSM5-209ENST00000468872 NUDT7P0C024 238 aa13.1□□□□□ -0.31
LSM5-209ENST00000468872 PPP1R15BQ5SWA1 713 aa13.09□□□□□ -0.31
LSM5-209ENST00000468872 PTCD2Q8WV60 388 aaKnown RBP13.09□□□□□ -0.31
LSM5-209ENST00000468872 CADPS2Q86UW7 1296 aa13.08□□□□□ -0.32
LSM5-209ENST00000468872 SPRYD3Q8NCJ5 442 aa13.08□□□□□ -0.32
LSM5-209ENST00000468872 LARP6Q9BRS8 491 aaKnown RBP13.07□□□□□ -0.32
LSM5-209ENST00000468872 ZNF316A6NFI3 1004 aaPredicted RBP13.06□□□□□ -0.32
LSM5-209ENST00000468872 KRTAP3-3Q9BYR6 98 aa13.06□□□□□ -0.32
LSM5-209ENST00000468872 KRTAP3-2Q9BYR7 98 aa13.06□□□□□ -0.32
LSM5-209ENST00000468872 DDX27Q96GQ7 796 aaKnown RBP13.04□□□□□ -0.32
LSM5-209ENST00000468872 MFSD10Q14728 455 aa13.02□□□□□ -0.33
LSM5-209ENST00000468872 LHX6Q9UPM6 363 aa13.02□□□□□ -0.33
LSM5-209ENST00000468872 KDM4FA0A1W2PPD8 638 aa13.01□□□□□ -0.33
LSM5-209ENST00000468872 PAXIP1Q6ZW49 1069 aaPredicted RBP13.01□□□□□ -0.33
LSM5-209ENST00000468872 ZNF687Q8N1G0 1237 aa13.01□□□□□ -0.33
LSM5-209ENST00000468872 TBC1D12O60347 775 aa13□□□□□ -0.33
LSM5-209ENST00000468872 OXER1Q8TDS5 423 aa13□□□□□ -0.33
LSM5-209ENST00000468872 CFAP44Q96MT7 982 aa13□□□□□ -0.33
LSM5-209ENST00000468872 UPF1Q92900 1129 aaKnown RBP eCLIP12.99□□□□□ -0.33
LSM5-209ENST00000468872 SPNS2Q8IVW8 549 aa12.96□□□□□ -0.33
LSM5-209ENST00000468872 SLC24A1O60721 1099 aa12.94□□□□□ -0.34
LSM5-209ENST00000468872 PSDA5PKW4 1024 aaPredicted RBP12.9□□□□□ -0.34
LSM5-209ENST00000468872 EMILIN3Q9NT22 766 aa12.89□□□□□ -0.35
LSM5-209ENST00000468872 MMRN1Q13201 1228 aa12.86□□□□□ -0.35
LSM5-209ENST00000468872 PBX2P40425 430 aa12.85□□□□□ -0.35
LSM5-209ENST00000468872 POTEEQ6S8J3 1075 aa12.85□□□□□ -0.35
LSM5-209ENST00000468872 MAP3K9P80192 1104 aa12.84□□□□□ -0.35
LSM5-209ENST00000468872 CAMK2BQ13554 666 aa12.84□□□□□ -0.35
LSM5-209ENST00000468872 EVI5O60447 810 aa12.83□□□□□ -0.36
LSM5-209ENST00000468872 PPP4R3BQ5MIZ7 849 aa12.83□□□□□ -0.36
LSM5-209ENST00000468872 AXIN2Q9Y2T1 843 aa12.83□□□□□ -0.36
LSM5-209ENST00000468872 LSM11P83369 360 aaKnown RBP eCLIP12.82□□□□□ -0.36
LSM5-209ENST00000468872 ANO8Q9HCE9 1232 aaPredicted RBP12.82□□□□□ -0.36
LSM5-209ENST00000468872 ANKRD13DQ6ZTN6 518 aa12.8□□□□□ -0.36
LSM5-209ENST00000468872 ZNF454Q8N9F8 522 aa12.79□□□□□ -0.36
LSM5-209ENST00000468872 ARHGAP33O14559 1287 aa12.78□□□□□ -0.36
LSM5-209ENST00000468872 FOSBP53539 338 aa12.76□□□□□ -0.37
LSM5-209ENST00000468872 DPYSL4O14531 572 aa12.75□□□□□ -0.37
LSM5-209ENST00000468872 JPH4Q96JJ6 628 aa12.75□□□□□ -0.37
LSM5-209ENST00000468872 PSEN2P49810 448 aa12.73□□□□□ -0.37
LSM5-209ENST00000468872 TSHZ2Q9NRE2 1034 aa12.73□□□□□ -0.37
LSM5-209ENST00000468872 WDR70Q9NW82 654 aa12.73□□□□□ -0.37
LSM5-209ENST00000468872 E2F4Q16254 413 aa12.71□□□□□ -0.37
LSM5-209ENST00000468872 DMRTA1Q5VZB9 504 aa12.7□□□□□ -0.38
LSM5-209ENST00000468872 KCNK17Q96T54 332 aa12.7□□□□□ -0.38
LSM5-209ENST00000468872 BCL2L12Q9HB09 334 aa12.7□□□□□ -0.38
LSM5-209ENST00000468872 PTGER2P43116 358 aa12.69□□□□□ -0.38
LSM5-209ENST00000468872 MYT1LQ9UL68 1186 aa12.69□□□□□ -0.38
LSM5-209ENST00000468872 ZDHHC16Q969W1 377 aa12.68□□□□□ -0.38
LSM5-209ENST00000468872 ADGRD1Q6QNK2 874 aa12.67□□□□□ -0.38
LSM5-209ENST00000468872 KCNH8Q96L42 1107 aa12.67□□□□□ -0.38
LSM5-209ENST00000468872 PCDHGA10Q9Y5H3 936 aa12.67□□□□□ -0.38
LSM5-209ENST00000468872 RNF166Q96A37 237 aaPredicted RBP12.65□□□□□ -0.38
LSM5-209ENST00000468872 ADAM33Q9BZ11 813 aa12.65□□□□□ -0.38
LSM5-209ENST00000468872 TK2O00142 265 aa12.64□□□□□ -0.39
LSM5-209ENST00000468872 PTPREP23469 700 aa12.64□□□□□ -0.39
LSM5-209ENST00000468872 PHF14O94880 888 aa12.63□□□□□ -0.39
LSM5-209ENST00000468872 PDIA6Q15084 440 aa12.63□□□□□ -0.39
LSM5-209ENST00000468872 PLCB2Q00722 1185 aa12.62□□□□□ -0.39
LSM5-209ENST00000468872 ARIH1Q9Y4X5 557 aaPredicted RBP12.62□□□□□ -0.39
LSM5-209ENST00000468872 TYW1BQ6NUM6 668 aa12.61□□□□□ -0.39
LSM5-209ENST00000468872 SPDYE16A6NNV3 312 aaPredicted RBP12.6□□□□□ -0.39
LSM5-209ENST00000468872 FBXW7Q969H0 707 aa12.6□□□□□ -0.39
LSM5-209ENST00000468872 HRO43593 1189 aa12.59□□□□□ -0.39
LSM5-209ENST00000468872 DDX12PQ92771 950 aa12.59□□□□□ -0.39
LSM5-209ENST00000468872 EPAS1Q99814 870 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms