RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 KCNH8Q96L42 1107 aa9.23□□□□□ -0.93
USP39-213ENST00000467885 KDM5BQ9UGL1 1544 aa9.22□□□□□ -0.93
USP39-213ENST00000467885 ZBTB22O15209 634 aa9.22□□□□□ -0.93
USP39-213ENST00000467885 ABCC2Q92887 1545 aa9.21□□□□□ -0.94
USP39-213ENST00000467885 RAPGEF6Q8TEU7 1601 aa9.2□□□□□ -0.94
USP39-213ENST00000467885 LRRC9Q6ZRR7 1453 aa9.2□□□□□ -0.94
USP39-213ENST00000467885 PITPNM1O00562 1244 aa9.19□□□□□ -0.94
USP39-213ENST00000467885 MTUS2Q5JR59 1369 aa9.19□□□□□ -0.94
USP39-213ENST00000467885 CDK13Q14004 1512 aaKnown RBP9.19□□□□□ -0.94
USP39-213ENST00000467885 PCF11O94913 1555 aaKnown RBP9.19□□□□□ -0.94
USP39-213ENST00000467885 ADCY10Q96PN6 1610 aa9.17□□□□□ -0.94
USP39-213ENST00000467885 MAGI3Q5TCQ9 1506 aa9.17□□□□□ -0.94
USP39-213ENST00000467885 CCDC18Q5T9S5 1454 aa9.17□□□□□ -0.94
USP39-213ENST00000467885 TIAM1Q13009 1591 aa9.16□□□□□ -0.94
USP39-213ENST00000467885 TROQ12816 1431 aaPredicted RBP9.16□□□□□ -0.94
USP39-213ENST00000467885 ASXL2Q76L83 1435 aa9.15□□□□□ -0.94
USP39-213ENST00000467885 FXR2P51116 673 aaKnown RBP eCLIP9.15□□□□□ -0.94
USP39-213ENST00000467885 TRIM26Q12899 539 aaPredicted RBP9.15□□□□□ -0.94
USP39-213ENST00000467885 HECW1Q76N89 1606 aa9.15□□□□□ -0.94
USP39-213ENST00000467885 PHLDB1Q86UU1 1377 aa9.13□□□□□ -0.95
USP39-213ENST00000467885 FAM69CQ0P6D2 419 aa9.13□□□□□ -0.95
USP39-213ENST00000467885 LRRIQ1Q96JM4 1722 aa9.13□□□□□ -0.95
USP39-213ENST00000467885 ZNF644Q9H582 1327 aaPredicted RBP9.12□□□□□ -0.95
USP39-213ENST00000467885 CFDP1Q9UEE9 299 aaPredicted RBP9.12□□□□□ -0.95
USP39-213ENST00000467885 NCOA2Q15596 1464 aa9.11□□□□□ -0.95
USP39-213ENST00000467885 ABCC10Q5T3U5 1492 aa9.11□□□□□ -0.95
USP39-213ENST00000467885 HAX1O00165 279 aa9.11□□□□□ -0.95
USP39-213ENST00000467885 ATXN8OSP0DMR3 200 aa9.11□□□□□ -0.95
USP39-213ENST00000467885 GPATCH8Q9UKJ3 1502 aaKnown RBP9.1□□□□□ -0.95
USP39-213ENST00000467885 WDR7Q9Y4E6 1490 aa9.1□□□□□ -0.95
USP39-213ENST00000467885 EFCAB2Q5VUJ9 269 aa9.1□□□□□ -0.95
USP39-213ENST00000467885 CCNB3Q8WWL7 1395 aa9.1□□□□□ -0.95
USP39-213ENST00000467885 ZCCHC11Q5TAX3 1644 aaKnown RBP9.09□□□□□ -0.95
USP39-213ENST00000467885 PLCH2O75038 1416 aa9.09□□□□□ -0.95
USP39-213ENST00000467885 HNRNPMP52272 730 aaKnown RBP eCLIP9.08□□□□□ -0.96
USP39-213ENST00000467885 PCGF6Q9BYE7 350 aa9.08□□□□□ -0.96
USP39-213ENST00000467885 ZNF777Q9ULD5 760 aaPredicted RBP9.08□□□□□ -0.96
USP39-213ENST00000467885 MAPKBP1O60336 1514 aa9.07□□□□□ -0.96
USP39-213ENST00000467885 FAM50AQ14320 339 aaKnown RBP9.07□□□□□ -0.96
USP39-213ENST00000467885 MYOM3Q5VTT5 1437 aa9.06□□□□□ -0.96
USP39-213ENST00000467885 CD109Q6YHK3 1445 aa9.06□□□□□ -0.96
USP39-213ENST00000467885 MIA2Q96PC5 1412 aa9.06□□□□□ -0.96
USP39-213ENST00000467885 RRBP1Q9P2E9 1410 aaKnown RBP9.06□□□□□ -0.96
USP39-213ENST00000467885 EHBP1L1Q8N3D4 1523 aa9.06□□□□□ -0.96
USP39-213ENST00000467885 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.06□□□□□ -0.96
USP39-213ENST00000467885 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.05□□□□□ -0.96
USP39-213ENST00000467885 CFAP43Q8NDM7 1665 aa9.05□□□□□ -0.96
USP39-213ENST00000467885 SPDYE2BA6NHP3 402 aa9.05□□□□□ -0.96
USP39-213ENST00000467885 SPDYE6P0CI01 402 aa9.05□□□□□ -0.96
USP39-213ENST00000467885 SPDYE2Q495Y8 402 aa9.05□□□□□ -0.96
USP39-213ENST00000467885 RSPH4AQ5TD94 716 aa9.05□□□□□ -0.96
USP39-213ENST00000467885 FGD6Q6ZV73 1430 aa9.05□□□□□ -0.96
USP39-213ENST00000467885 KIF14Q15058 1648 aa9.03□□□□□ -0.96
USP39-213ENST00000467885 ITGAEP38570 1179 aa9.03□□□□□ -0.96
USP39-213ENST00000467885 AFAP1Q8N556 730 aa9.03□□□□□ -0.96
USP39-213ENST00000467885 GLI2P10070 1586 aa9.01□□□□□ -0.97
USP39-213ENST00000467885 EVX2Q03828 476 aa9.01□□□□□ -0.97
USP39-213ENST00000467885 PTPRKQ15262 1439 aa9.01□□□□□ -0.97
USP39-213ENST00000467885 SUPT6HQ7KZ85 1726 aaKnown RBP9.01□□□□□ -0.97
USP39-213ENST00000467885 TCOF1Q13428 1488 aaKnown RBP9.01□□□□□ -0.97
USP39-213ENST00000467885 KIAA1107Q9UPP5 1409 aa9□□□□□ -0.97
USP39-213ENST00000467885 TSPY4P0CV99 314 aa9□□□□□ -0.97
USP39-213ENST00000467885 TSPY10P0CW01 314 aa9□□□□□ -0.97
USP39-213ENST00000467885 CHIC2Q9UKJ5 165 aa9□□□□□ -0.97
USP39-213ENST00000467885 MBD5Q9P267 1494 aa9□□□□□ -0.97
USP39-213ENST00000467885 ABCC5O15440 1437 aa8.99□□□□□ -0.97
USP39-213ENST00000467885 AKNAQ7Z591 1439 aa8.99□□□□□ -0.97
USP39-213ENST00000467885 RAPGEF3O95398 923 aa8.99□□□□□ -0.97
USP39-213ENST00000467885 ARHGEF12Q9NZN5 1544 aa8.99□□□□□ -0.97
USP39-213ENST00000467885 ABCA9Q8IUA7 1624 aa8.98□□□□□ -0.97
USP39-213ENST00000467885 SCAPERQ9BY12 1400 aa8.98□□□□□ -0.97
USP39-213ENST00000467885 MKRN4PQ13434 485 aaPredicted RBP8.98□□□□□ -0.97
USP39-213ENST00000467885 TTC37Q6PGP7 1564 aa8.98□□□□□ -0.97
USP39-213ENST00000467885 FANCAO15360 1455 aa8.97□□□□□ -0.97
USP39-213ENST00000467885 HRCP23327 699 aa8.97□□□□□ -0.97
USP39-213ENST00000467885 RRP7BPQ9NSQ0 103 aa8.97□□□□□ -0.97
USP39-213ENST00000467885 TRAPPC8Q9Y2L5 1435 aa8.97□□□□□ -0.97
USP39-213ENST00000467885 ARAP3Q8WWN8 1544 aa8.96□□□□□ -0.97
USP39-213ENST00000467885 COL17A1Q9UMD9 1497 aaPredicted RBP8.96□□□□□ -0.98
USP39-213ENST00000467885 ARHGAP5Q13017 1502 aa8.95□□□□□ -0.98
USP39-213ENST00000467885 DIP2BQ9P265 1576 aa8.95□□□□□ -0.98
USP39-213ENST00000467885 NEO1Q92859 1461 aa8.95□□□□□ -0.98
USP39-213ENST00000467885 PTPN23Q9H3S7 1636 aa8.94□□□□□ -0.98
USP39-213ENST00000467885 CDC42BPBQ9Y5S2 1711 aa8.94□□□□□ -0.98
USP39-213ENST00000467885 PRKAR2AP13861 404 aaKnown RBP8.94□□□□□ -0.98
USP39-213ENST00000467885 SPDYE1Q8NFV5 336 aaPredicted RBP8.94□□□□□ -0.98
USP39-213ENST00000467885 SPAG9O60271 1321 aaKnown RBP8.94□□□□□ -0.98
USP39-213ENST00000467885 DAPK1P53355 1430 aa8.94□□□□□ -0.98
USP39-213ENST00000467885 CAMSAP2Q08AD1 1489 aa8.94□□□□□ -0.98
USP39-213ENST00000467885 PLEKHH2Q8IVE3 1493 aa8.94□□□□□ -0.98
USP39-213ENST00000467885 CDC42BPAQ5VT25 1732 aa8.94□□□□□ -0.98
USP39-213ENST00000467885 CLEC11AQ9Y240 323 aa8.93□□□□□ -0.98
USP39-213ENST00000467885 NCOA1Q15788 1441 aa8.93□□□□□ -0.98
USP39-213ENST00000467885 SAMD9LQ8IVG5 1584 aa8.93□□□□□ -0.98
USP39-213ENST00000467885 MAP3K4Q9Y6R4 1608 aa8.93□□□□□ -0.98
USP39-213ENST00000467885 SSUH2Q9Y2M2 353 aa8.92□□□□□ -0.98
USP39-213ENST00000467885 DENND4BO75064 1496 aaPredicted RBP8.91□□□□□ -0.98
USP39-213ENST00000467885 ADGRL1O94910 1474 aa8.91□□□□□ -0.98
USP39-213ENST00000467885 ROCK1Q13464 1354 aa8.91□□□□□ -0.98
USP39-213ENST00000467885 ZNF692Q9BU19 519 aaPredicted RBP8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms