RNA–Protein interactions for RNA: ENST00000462258.1

SF3A3-204, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-204ENST00000462258 ARHGAP5Q13017 1502 aa16.46■□□□□ 0.23
SF3A3-204ENST00000462258 CDC42BPAQ5VT25 1732 aa16.45■□□□□ 0.22
SF3A3-204ENST00000462258 POGZQ7Z3K3 1410 aa16.45■□□□□ 0.22
SF3A3-204ENST00000462258 ZFYVE16Q7Z3T8 1539 aa16.44■□□□□ 0.22
SF3A3-204ENST00000462258 BCORL1Q5H9F3 1711 aa16.42■□□□□ 0.22
SF3A3-204ENST00000462258 SCAPERQ9BY12 1400 aa16.41■□□□□ 0.22
SF3A3-204ENST00000462258 ADAMTSL3P82987 1691 aa16.4■□□□□ 0.22
SF3A3-204ENST00000462258 ITSN2Q9NZM3 1697 aa16.4■□□□□ 0.22
SF3A3-204ENST00000462258 ABCC1P33527 1531 aa16.4■□□□□ 0.22
SF3A3-204ENST00000462258 MAGI2Q86UL8 1455 aa16.39■□□□□ 0.21
SF3A3-204ENST00000462258 SIGLEC1Q9BZZ2 1709 aa16.39■□□□□ 0.21
SF3A3-204ENST00000462258 KDM5CP41229 1560 aa16.38■□□□□ 0.21
SF3A3-204ENST00000462258 EFCAB2Q5VUJ9 269 aa16.38■□□□□ 0.21
SF3A3-204ENST00000462258 EHBP1L1Q8N3D4 1523 aa16.38■□□□□ 0.21
SF3A3-204ENST00000462258 ZNF518AQ6AHZ1 1483 aa16.37■□□□□ 0.21
SF3A3-204ENST00000462258 HECW2Q9P2P5 1572 aa16.37■□□□□ 0.21
SF3A3-204ENST00000462258 MADDQ8WXG6 1647 aa16.37■□□□□ 0.21
SF3A3-204ENST00000462258 YEATS2Q9ULM3 1422 aa16.36■□□□□ 0.21
SF3A3-204ENST00000462258 SAMD9LQ8IVG5 1584 aa16.34■□□□□ 0.21
SF3A3-204ENST00000462258 RIMS1Q86UR5 1692 aaKnown RBP16.33■□□□□ 0.2
SF3A3-204ENST00000462258 TIAM1Q13009 1591 aa16.32■□□□□ 0.2
SF3A3-204ENST00000462258 MTUS2Q5JR59 1369 aa16.32■□□□□ 0.2
SF3A3-204ENST00000462258 ABCA6Q8N139 1617 aa16.32■□□□□ 0.2
SF3A3-204ENST00000462258 DIP2CQ9Y2E4 1556 aa16.31■□□□□ 0.2
SF3A3-204ENST00000462258 GPATCH8Q9UKJ3 1502 aaKnown RBP16.31■□□□□ 0.2
SF3A3-204ENST00000462258 FER1L4A9Z1Z3 1794 aa16.31■□□□□ 0.2
SF3A3-204ENST00000462258 SYCP2Q9BX26 1530 aa16.3■□□□□ 0.2
SF3A3-204ENST00000462258 ARHGEF12Q9NZN5 1544 aa16.3■□□□□ 0.2
SF3A3-204ENST00000462258 C9orf84Q5VXU9 1444 aa16.3■□□□□ 0.2
SF3A3-204ENST00000462258 VPS8Q8N3P4 1428 aa16.3■□□□□ 0.2
SF3A3-204ENST00000462258 ARID4BQ4LE39 1312 aaPredicted RBP16.3■□□□□ 0.2
SF3A3-204ENST00000462258 PTPRMP28827 1452 aa16.29■□□□□ 0.2
SF3A3-204ENST00000462258 SUPT6HQ7KZ85 1726 aaKnown RBP16.29■□□□□ 0.2
SF3A3-204ENST00000462258 LOC105371045A0A1W2PR82 267 aa16.29■□□□□ 0.2
SF3A3-204ENST00000462258 REREQ9P2R6 1566 aa16.28■□□□□ 0.2
SF3A3-204ENST00000462258 ATP10AO60312 1499 aa16.28■□□□□ 0.2
SF3A3-204ENST00000462258 TRAPPC8Q9Y2L5 1435 aa16.27■□□□□ 0.19
SF3A3-204ENST00000462258 CCNB3Q8WWL7 1395 aa16.26■□□□□ 0.19
SF3A3-204ENST00000462258 KIDINS220Q9ULH0 1771 aa16.26■□□□□ 0.19
SF3A3-204ENST00000462258 MLH3Q9UHC1 1453 aa16.26■□□□□ 0.19
SF3A3-204ENST00000462258 PLEKHH2Q8IVE3 1493 aa16.24■□□□□ 0.19
SF3A3-204ENST00000462258 AFAP1Q8N556 730 aa16.24■□□□□ 0.19
SF3A3-204ENST00000462258 INO80Q9ULG1 1556 aaPredicted RBP16.24■□□□□ 0.19
SF3A3-204ENST00000462258 NCOA2Q15596 1464 aa16.22■□□□□ 0.19
SF3A3-204ENST00000462258 ZNF777Q9ULD5 760 aaPredicted RBP16.21■□□□□ 0.19
SF3A3-204ENST00000462258 KIAA1107Q9UPP5 1409 aa16.2■□□□□ 0.18
SF3A3-204ENST00000462258 ATP7AQ04656 1500 aa16.2■□□□□ 0.18
SF3A3-204ENST00000462258 CFDP1Q9UEE9 299 aaPredicted RBP16.2■□□□□ 0.18
SF3A3-204ENST00000462258 MYT1LQ9UL68 1186 aa16.2■□□□□ 0.18
SF3A3-204ENST00000462258 LRRC9Q6ZRR7 1453 aa16.19■□□□□ 0.18
SF3A3-204ENST00000462258 MAP3K1Q13233 1512 aa16.19■□□□□ 0.18
SF3A3-204ENST00000462258 AGLP35573 1532 aa16.18■□□□□ 0.18
SF3A3-204ENST00000462258 MLECQ14165 292 aa16.17■□□□□ 0.18
SF3A3-204ENST00000462258 PLXNC1O60486 1568 aa16.16■□□□□ 0.18
SF3A3-204ENST00000462258 CAMSAP2Q08AD1 1489 aa16.16■□□□□ 0.18
SF3A3-204ENST00000462258 ADGBQ8N7X0 1667 aa16.15■□□□□ 0.18
SF3A3-204ENST00000462258 HNRNPMP52272 730 aaKnown RBP eCLIP16.13■□□□□ 0.17
SF3A3-204ENST00000462258 LMTK3Q96Q04 1460 aa16.13■□□□□ 0.17
SF3A3-204ENST00000462258 MBD5Q9P267 1494 aa16.13■□□□□ 0.17
SF3A3-204ENST00000462258 SPAG9O60271 1321 aaKnown RBP16.13■□□□□ 0.17
SF3A3-204ENST00000462258 PREX1Q8TCU6 1659 aa16.11■□□□□ 0.17
SF3A3-204ENST00000462258 CCDC141Q6ZP82 1450 aa16.11■□□□□ 0.17
SF3A3-204ENST00000462258 ZNF644Q9H582 1327 aaPredicted RBP16.11■□□□□ 0.17
SF3A3-204ENST00000462258 C3P01024 1663 aa16.11■□□□□ 0.17
SF3A3-204ENST00000462258 ARHGEF5Q12774 1597 aa16.1■□□□□ 0.17
SF3A3-204ENST00000462258 A2MP01023 1474 aa16.09■□□□□ 0.17
SF3A3-204ENST00000462258 MROH2AA6NES4 1674 aa16.08■□□□□ 0.17
SF3A3-204ENST00000462258 PLPPR3Q6T4P5 718 aa16.08■□□□□ 0.16
SF3A3-204ENST00000462258 MYOM3Q5VTT5 1437 aa16.06■□□□□ 0.16
SF3A3-204ENST00000462258 CLTCQ00610 1675 aaKnown RBP16.05■□□□□ 0.16
SF3A3-204ENST00000462258 RTEL1-TNFRSF6BF6WH68 1400 aa16.05■□□□□ 0.16
SF3A3-204ENST00000462258 KANK4Q5T7N3 995 aaPredicted RBP16.05■□□□□ 0.16
SF3A3-204ENST00000462258 CNTLNQ9NXG0 1405 aa16.04■□□□□ 0.16
SF3A3-204ENST00000462258 MAST1Q9Y2H9 1570 aa16.04■□□□□ 0.16
SF3A3-204ENST00000462258 CROCC2H7BZ55 1655 aa16.03■□□□□ 0.16
SF3A3-204ENST00000462258 MIA2Q96PC5 1412 aa16.02■□□□□ 0.16
SF3A3-204ENST00000462258 APLP2Q06481 763 aa16.01■□□□□ 0.15
SF3A3-204ENST00000462258 PTPN23Q9H3S7 1636 aa16.01■□□□□ 0.15
SF3A3-204ENST00000462258 ESF1Q9H501 851 aaKnown RBP16■□□□□ 0.15
SF3A3-204ENST00000462258 CEBPAP49715 358 aaPredicted RBP15.99■□□□□ 0.15
SF3A3-204ENST00000462258 UHRF1BP1Q6BDS2 1440 aa15.98■□□□□ 0.15
SF3A3-204ENST00000462258 SETD1BQ9UPS6 1966 aaKnown RBP15.98■□□□□ 0.15
SF3A3-204ENST00000462258 RSPH4AQ5TD94 716 aa15.97■□□□□ 0.15
SF3A3-204ENST00000462258 FAM135AQ9P2D6 1515 aa15.96■□□□□ 0.15
SF3A3-204ENST00000462258 EIF2AK4Q9P2K8 1649 aaKnown RBP15.96■□□□□ 0.15
SF3A3-204ENST00000462258 DHX29Q7Z478 1369 aaKnown RBP15.96■□□□□ 0.15
SF3A3-204ENST00000462258 DNMT1P26358 1616 aaKnown RBP15.95■□□□□ 0.14
SF3A3-204ENST00000462258 MYO3AQ8NEV4 1616 aa15.95■□□□□ 0.14
SF3A3-204ENST00000462258 HSPA2P54652 639 aa15.95■□□□□ 0.14
SF3A3-204ENST00000462258 SHANK2Q9UPX8 1470 aa15.95■□□□□ 0.14
SF3A3-204ENST00000462258 FGD6Q6ZV73 1430 aa15.94■□□□□ 0.14
SF3A3-204ENST00000462258 KDM5DQ9BY66 1539 aa15.94■□□□□ 0.14
SF3A3-204ENST00000462258 RNF17Q9BXT8 1623 aaKnown RBP15.94■□□□□ 0.14
SF3A3-204ENST00000462258 ZNF142P52746 1687 aaPredicted RBP15.94■□□□□ 0.14
SF3A3-204ENST00000462258 NPATQ14207 1427 aa15.94■□□□□ 0.14
SF3A3-204ENST00000462258 TCOF1Q13428 1488 aaKnown RBP15.93■□□□□ 0.14
SF3A3-204ENST00000462258 TSPY4P0CV99 314 aa15.92■□□□□ 0.14
SF3A3-204ENST00000462258 TSPY10P0CW01 314 aa15.92■□□□□ 0.14
SF3A3-204ENST00000462258 GGT6Q6P531 493 aa15.92■□□□□ 0.14
SF3A3-204ENST00000462258 ZC3H13Q5T200 1668 aaKnown RBP15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms