RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 HSCBQ8IWL3 235 aa16.93■□□□□ 0.3
USP40-208ENST00000450966 ATAD2BQ9ULI0 1458 aa16.93■□□□□ 0.3
USP40-208ENST00000450966 PLCB2Q00722 1185 aa16.93■□□□□ 0.3
USP40-208ENST00000450966 RRP7BPQ9NSQ0 103 aa16.92■□□□□ 0.3
USP40-208ENST00000450966 MROH2BQ7Z745 1585 aa16.92■□□□□ 0.3
USP40-208ENST00000450966 EFCAB2Q5VUJ9 269 aa16.92■□□□□ 0.3
USP40-208ENST00000450966 TPM2P07951 284 aa16.91■□□□□ 0.3
USP40-208ENST00000450966 SETQ01105 290 aaPredicted RBP16.91■□□□□ 0.3
USP40-208ENST00000450966 FMN1Q68DA7 1419 aa16.91■□□□□ 0.3
USP40-208ENST00000450966 ZRSR1Q15695 479 aaKnown RBP16.91■□□□□ 0.3
USP40-208ENST00000450966 FAM43AQ8N2R8 423 aa16.91■□□□□ 0.3
USP40-208ENST00000450966 CFAP53Q96M91 514 aa16.9■□□□□ 0.3
USP40-208ENST00000450966 GOLGA6L1Q8N7Z2 621 aa16.9■□□□□ 0.3
USP40-208ENST00000450966 ZBTB7CA1YPR0 619 aa16.88■□□□□ 0.29
USP40-208ENST00000450966 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.88■□□□□ 0.29
USP40-208ENST00000450966 EIF4G2P78344 907 aaKnown RBP eCLIP16.87■□□□□ 0.29
USP40-208ENST00000450966 RSPH4AQ5TD94 716 aa16.87■□□□□ 0.29
USP40-208ENST00000450966 OSCARQ8IYS5 282 aa16.87■□□□□ 0.29
USP40-208ENST00000450966 GZF1Q9H116 711 aaPredicted RBP16.86■□□□□ 0.29
USP40-208ENST00000450966 POGKQ9P215 609 aa16.86■□□□□ 0.29
USP40-208ENST00000450966 RGS3P49796 1198 aa16.85■□□□□ 0.29
USP40-208ENST00000450966 FAM13BQ9NYF5 915 aa16.85■□□□□ 0.29
USP40-208ENST00000450966 IL27Q8NEV9 243 aa16.84■□□□□ 0.29
USP40-208ENST00000450966 TDRD9Q8NDG6 1382 aaKnown RBP16.82■□□□□ 0.28
USP40-208ENST00000450966 SMARCA4P51532 1647 aa16.82■□□□□ 0.28
USP40-208ENST00000450966 CSPP1Q1MSJ5 1256 aa16.82■□□□□ 0.28
USP40-208ENST00000450966 CCDC66A2RUB6 948 aa16.81■□□□□ 0.28
USP40-208ENST00000450966 FANCD2Q9BXW9 1451 aa16.81■□□□□ 0.28
USP40-208ENST00000450966 CASC1Q6TDU7 716 aa16.8■□□□□ 0.28
USP40-208ENST00000450966 PLEKHG5O94827 1062 aa16.79■□□□□ 0.28
USP40-208ENST00000450966 TAF3Q5VWG9 929 aa16.79■□□□□ 0.28
USP40-208ENST00000450966 DRC7Q8IY82 874 aa16.77■□□□□ 0.27
USP40-208ENST00000450966 RAPGEF2Q9Y4G8 1499 aa16.76■□□□□ 0.27
USP40-208ENST00000450966 DDX11L8A8MPP1 907 aa16.76■□□□□ 0.27
USP40-208ENST00000450966 ZMYND15Q9H091 742 aa16.76■□□□□ 0.27
USP40-208ENST00000450966 SYAP1Q96A49 352 aaPredicted RBP16.75■□□□□ 0.27
USP40-208ENST00000450966 NOM1Q5C9Z4 860 aaKnown RBP16.75■□□□□ 0.27
USP40-208ENST00000450966 SLKQ9H2G2 1235 aaPredicted RBP16.74■□□□□ 0.27
USP40-208ENST00000450966 NUDCQ9Y266 331 aa16.74■□□□□ 0.27
USP40-208ENST00000450966 RGL3Q3MIN7 710 aa16.74■□□□□ 0.27
USP40-208ENST00000450966 ARHGAP35Q9NRY4 1499 aa16.74■□□□□ 0.27
USP40-208ENST00000450966 KNSTRNQ9Y448 316 aa16.73■□□□□ 0.27
USP40-208ENST00000450966 MLECQ14165 292 aa16.73■□□□□ 0.27
USP40-208ENST00000450966 JPH4Q96JJ6 628 aa16.72■□□□□ 0.27
USP40-208ENST00000450966 SENP3Q9H4L4 574 aaPredicted RBP16.72■□□□□ 0.27
USP40-208ENST00000450966 HTATSF1O43719 755 aaKnown RBP16.71■□□□□ 0.27
USP40-208ENST00000450966 TEX35Q5T0J7 233 aa16.71■□□□□ 0.27
USP40-208ENST00000450966 NCAPD3P42695 1498 aa16.71■□□□□ 0.27
USP40-208ENST00000450966 EID1Q9Y6B2 187 aa16.71■□□□□ 0.27
USP40-208ENST00000450966 CCDC18Q5T9S5 1454 aa16.7■□□□□ 0.26
USP40-208ENST00000450966 ANKRD30AQ9BXX3 1397 aa16.7■□□□□ 0.26
USP40-208ENST00000450966 HIRIP3Q9BW71 556 aaPredicted RBP16.7■□□□□ 0.26
USP40-208ENST00000450966 SKOR2Q2VWA4 1001 aaPredicted RBP16.7■□□□□ 0.26
USP40-208ENST00000450966 CARD11Q9BXL7 1154 aa16.69■□□□□ 0.26
USP40-208ENST00000450966 BRPF3Q9ULD4 1205 aa16.68■□□□□ 0.26
USP40-208ENST00000450966 CFAP44Q96MT7 982 aa16.68■□□□□ 0.26
USP40-208ENST00000450966 GPS2Q13227 327 aa16.66■□□□□ 0.26
USP40-208ENST00000450966 CALD1Q05682 793 aaKnown RBP16.66■□□□□ 0.26
USP40-208ENST00000450966 GGT6Q6P531 493 aa16.66■□□□□ 0.26
USP40-208ENST00000450966 SPRYD3Q8NCJ5 442 aa16.66■□□□□ 0.26
USP40-208ENST00000450966 LMOD2Q6P5Q4 547 aa16.66■□□□□ 0.26
USP40-208ENST00000450966 PTPRGP23470 1445 aa16.65■□□□□ 0.26
USP40-208ENST00000450966 SPAG9O60271 1321 aaKnown RBP16.63■□□□□ 0.25
USP40-208ENST00000450966 MAPK8IP3Q9UPT6 1336 aa16.62■□□□□ 0.25
USP40-208ENST00000450966 CHMP4BQ9H444 224 aaKnown RBP16.62■□□□□ 0.25
USP40-208ENST00000450966 GOLGA6L4A6NEF3 574 aa16.62■□□□□ 0.25
USP40-208ENST00000450966 WIZO95785 1651 aa16.62■□□□□ 0.25
USP40-208ENST00000450966 VPS8Q8N3P4 1428 aa16.62■□□□□ 0.25
USP40-208ENST00000450966 PDIA4P13667 645 aaKnown RBP16.62■□□□□ 0.25
USP40-208ENST00000450966 TMF1P82094 1093 aa16.61■□□□□ 0.25
USP40-208ENST00000450966 CWC15Q9P013 229 aaKnown RBP16.61■□□□□ 0.25
USP40-208ENST00000450966 TPRNQ4KMQ1 711 aa16.61■□□□□ 0.25
USP40-208ENST00000450966 PDE4AP27815 886 aa16.6■□□□□ 0.25
USP40-208ENST00000450966 MS4A1P11836 297 aa16.6■□□□□ 0.25
USP40-208ENST00000450966 PHF14O94880 888 aa16.6■□□□□ 0.25
USP40-208ENST00000450966 FRAT1Q92837 279 aaPredicted RBP16.6■□□□□ 0.25
USP40-208ENST00000450966 MRE11P49959 708 aa16.59■□□□□ 0.25
USP40-208ENST00000450966 CHMP4AQ9BY43 222 aa16.58■□□□□ 0.24
USP40-208ENST00000450966 NFKBIBQ15653 356 aa16.58■□□□□ 0.24
USP40-208ENST00000450966 AEBP2Q6ZN18 517 aaPredicted RBP16.58■□□□□ 0.24
USP40-208ENST00000450966 FTSJ3Q8IY81 847 aaKnown RBP16.58■□□□□ 0.24
USP40-208ENST00000450966 TSPYL1Q9H0U9 437 aa16.58■□□□□ 0.24
USP40-208ENST00000450966 TAF7LQ5H9L4 462 aa16.57■□□□□ 0.24
USP40-208ENST00000450966 HDGFL2Q7Z4V5 671 aaPredicted RBP16.57■□□□□ 0.24
USP40-208ENST00000450966 NPHP1O15259 732 aa16.56■□□□□ 0.24
USP40-208ENST00000450966 R3HCC1Q9Y3T6 440 aaKnown RBP16.56■□□□□ 0.24
USP40-208ENST00000450966 EIF3AQ14152 1382 aaKnown RBP16.56■□□□□ 0.24
USP40-208ENST00000450966 GAPVD1Q14C86 1478 aa16.55■□□□□ 0.24
USP40-208ENST00000450966 PDCL3Q9H2J4 239 aa16.55■□□□□ 0.24
USP40-208ENST00000450966 CYB5RLQ6IPT4 315 aa16.54■□□□□ 0.24
USP40-208ENST00000450966 BBXQ8WY36 941 aaPredicted RBP16.53■□□□□ 0.24
USP40-208ENST00000450966 WASHC2CQ9Y4E1 1318 aa16.52■□□□□ 0.24
USP40-208ENST00000450966 DIAPH3Q9NSV4 1193 aa16.52■□□□□ 0.24
USP40-208ENST00000450966 SRPK2P78362 688 aaKnown RBP16.52■□□□□ 0.23
USP40-208ENST00000450966 MRC2Q9UBG0 1479 aa16.52■□□□□ 0.23
USP40-208ENST00000450966 NOC3LQ8WTT2 800 aaKnown RBP16.51■□□□□ 0.23
USP40-208ENST00000450966 KIF3BO15066 747 aa16.51■□□□□ 0.23
USP40-208ENST00000450966 HMGN5P82970 282 aaKnown RBP16.51■□□□□ 0.23
USP40-208ENST00000450966 UACAQ9BZF9 1416 aa16.5■□□□□ 0.23
USP40-208ENST00000450966 PATL2C9JE40 543 aaKnown RBP16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms