RNA–Protein interactions for RNA: ENST00000449223.3

RPS28-202, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 1,523 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-202ENST00000449223 DIP2BQ9P265 1576 aa29.37■■■□□ 2.29
RPS28-202ENST00000449223 CFDP1Q9UEE9 299 aaPredicted RBP29.36■■■□□ 2.29
RPS28-202ENST00000449223 PCGF6Q9BYE7 350 aa29.35■■■□□ 2.29
RPS28-202ENST00000449223 CAMSAP2Q08AD1 1489 aa29.33■■■□□ 2.29
RPS28-202ENST00000449223 MAP3K4Q9Y6R4 1608 aa29.32■■■□□ 2.28
RPS28-202ENST00000449223 ARHGAP5Q13017 1502 aa29.32■■■□□ 2.28
RPS28-202ENST00000449223 SAMD9LQ8IVG5 1584 aa29.29■■■□□ 2.28
RPS28-202ENST00000449223 FAM50AQ14320 339 aaKnown RBP29.27■■■□□ 2.28
RPS28-202ENST00000449223 CD109Q6YHK3 1445 aa29.26■■■□□ 2.28
RPS28-202ENST00000449223 DNMT1P26358 1616 aaKnown RBP29.26■■■□□ 2.27
RPS28-202ENST00000449223 PLEKHH2Q8IVE3 1493 aa29.25■■■□□ 2.27
RPS28-202ENST00000449223 KIF13AQ9H1H9 1805 aa29.25■■■□□ 2.27
RPS28-202ENST00000449223 ZNF644Q9H582 1327 aaPredicted RBP29.23■■■□□ 2.27
RPS28-202ENST00000449223 KIAA1107Q9UPP5 1409 aa29.23■■■□□ 2.27
RPS28-202ENST00000449223 CFAP74Q9C0B2 1584 aa29.22■■■□□ 2.27
RPS28-202ENST00000449223 EFCAB2Q5VUJ9 269 aa29.22■■■□□ 2.27
RPS28-202ENST00000449223 ARHGEF5Q12774 1597 aa29.22■■■□□ 2.27
RPS28-202ENST00000449223 FANCAO15360 1455 aa29.21■■■□□ 2.27
RPS28-202ENST00000449223 ABCC1P33527 1531 aa29.2■■■□□ 2.26
RPS28-202ENST00000449223 MBD5Q9P267 1494 aa29.19■■■□□ 2.26
RPS28-202ENST00000449223 CROCC2H7BZ55 1655 aa29.18■■■□□ 2.26
RPS28-202ENST00000449223 DAPK1P53355 1430 aa29.17■■■□□ 2.26
RPS28-202ENST00000449223 FAM69CQ0P6D2 419 aa29.15■■■□□ 2.26
RPS28-202ENST00000449223 ZNF777Q9ULD5 760 aaPredicted RBP29.15■■■□□ 2.26
RPS28-202ENST00000449223 ABCC5O15440 1437 aa29.15■■■□□ 2.26
RPS28-202ENST00000449223 SYCP2Q9BX26 1530 aa29.15■■■□□ 2.26
RPS28-202ENST00000449223 NEO1Q92859 1461 aa29.15■■■□□ 2.26
RPS28-202ENST00000449223 PTPRKQ15262 1439 aa29.14■■■□□ 2.26
RPS28-202ENST00000449223 SHANK2Q9UPX8 1470 aa29.13■■■□□ 2.25
RPS28-202ENST00000449223 PPRC1Q5VV67 1664 aaKnown RBP29.13■■■□□ 2.25
RPS28-202ENST00000449223 RSPH4AQ5TD94 716 aa29.12■■■□□ 2.25
RPS28-202ENST00000449223 ARHGEF12Q9NZN5 1544 aa29.11■■■□□ 2.25
RPS28-202ENST00000449223 CCDC141Q6ZP82 1450 aa29.1■■■□□ 2.25
RPS28-202ENST00000449223 AKNAQ7Z591 1439 aa29.09■■■□□ 2.25
RPS28-202ENST00000449223 ADGRL1O94910 1474 aa29.07■■■□□ 2.24
RPS28-202ENST00000449223 TEX14Q8IWB6 1497 aa29.06■■■□□ 2.24
RPS28-202ENST00000449223 MAST1Q9Y2H9 1570 aa29.06■■■□□ 2.24
RPS28-202ENST00000449223 ITGAEP38570 1179 aa29.05■■■□□ 2.24
RPS28-202ENST00000449223 ADGRL2O95490 1459 aa29.05■■■□□ 2.24
RPS28-202ENST00000449223 ROCK1Q13464 1354 aa29.05■■■□□ 2.24
RPS28-202ENST00000449223 ADGBQ8N7X0 1667 aa29.05■■■□□ 2.24
RPS28-202ENST00000449223 HNRNPMP52272 730 aaKnown RBP eCLIP29.03■■■□□ 2.24
RPS28-202ENST00000449223 HFM1A2PYH4 1435 aa29.02■■■□□ 2.24
RPS28-202ENST00000449223 TSPOAP1O95153 1857 aa29.01■■■□□ 2.23
RPS28-202ENST00000449223 C9orf84Q5VXU9 1444 aa28.99■■■□□ 2.23
RPS28-202ENST00000449223 SCAPERQ9BY12 1400 aa28.99■■■□□ 2.23
RPS28-202ENST00000449223 GCC2Q8IWJ2 1684 aa28.99■■■□□ 2.23
RPS28-202ENST00000449223 TRAPPC8Q9Y2L5 1435 aa28.99■■■□□ 2.23
RPS28-202ENST00000449223 ZNF518AQ6AHZ1 1483 aa28.96■■■□□ 2.23
RPS28-202ENST00000449223 NAIPQ13075 1403 aa28.95■■■□□ 2.22
RPS28-202ENST00000449223 NCOA1Q15788 1441 aa28.95■■■□□ 2.22
RPS28-202ENST00000449223 POGZQ7Z3K3 1410 aa28.95■■■□□ 2.22
RPS28-202ENST00000449223 KDM5CP41229 1560 aa28.95■■■□□ 2.22
RPS28-202ENST00000449223 TSPY4P0CV99 314 aa28.94■■■□□ 2.22
RPS28-202ENST00000449223 TSPY10P0CW01 314 aa28.94■■■□□ 2.22
RPS28-202ENST00000449223 PLXNC1O60486 1568 aa28.93■■■□□ 2.22
RPS28-202ENST00000449223 RTEL1-TNFRSF6BF6WH68 1400 aa28.93■■■□□ 2.22
RPS28-202ENST00000449223 SETD5Q9C0A6 1442 aa28.93■■■□□ 2.22
RPS28-202ENST00000449223 INO80Q9ULG1 1556 aaPredicted RBP28.91■■■□□ 2.22
RPS28-202ENST00000449223 ANKRD30AQ9BXX3 1397 aa28.91■■■□□ 2.22
RPS28-202ENST00000449223 RICTORQ6R327 1708 aa28.91■■■□□ 2.22
RPS28-202ENST00000449223 ZFYVE16Q7Z3T8 1539 aa28.9■■■□□ 2.22
RPS28-202ENST00000449223 DENND4BO75064 1496 aaPredicted RBP28.9■■■□□ 2.22
RPS28-202ENST00000449223 CHIC2Q9UKJ5 165 aa28.89■■■□□ 2.22
RPS28-202ENST00000449223 HRCP23327 699 aa28.87■■■□□ 2.21
RPS28-202ENST00000449223 AFAP1Q8N556 730 aa28.85■■■□□ 2.21
RPS28-202ENST00000449223 ATP7AQ04656 1500 aa28.85■■■□□ 2.21
RPS28-202ENST00000449223 RAB3GAP2Q9H2M9 1393 aa28.85■■■□□ 2.21
RPS28-202ENST00000449223 FRMPD1Q5SYB0 1578 aa28.85■■■□□ 2.21
RPS28-202ENST00000449223 MLH3Q9UHC1 1453 aa28.84■■■□□ 2.21
RPS28-202ENST00000449223 HECW2Q9P2P5 1572 aa28.82■■■□□ 2.2
RPS28-202ENST00000449223 SPAG9O60271 1321 aaKnown RBP28.82■■■□□ 2.2
RPS28-202ENST00000449223 KIDINS220Q9ULH0 1771 aa28.81■■■□□ 2.2
RPS28-202ENST00000449223 ZMYM4Q5VZL5 1548 aa28.81■■■□□ 2.2
RPS28-202ENST00000449223 RRP7BPQ9NSQ0 103 aa28.81■■■□□ 2.2
RPS28-202ENST00000449223 KIF15Q9NS87 1388 aa28.8■■■□□ 2.2
RPS28-202ENST00000449223 TRHP20396 242 aaPredicted RBP28.77■■■□□ 2.2
RPS28-202ENST00000449223 DUOX2Q9NRD8 1548 aa28.76■■■□□ 2.2
RPS28-202ENST00000449223 KDM6BO15054 1643 aa28.76■■■□□ 2.19
RPS28-202ENST00000449223 ANKRD50Q9ULJ7 1429 aa28.75■■■□□ 2.19
RPS28-202ENST00000449223 ACIN1Q9UKV3 1341 aaKnown RBP28.75■■■□□ 2.19
RPS28-202ENST00000449223 MAGI2Q86UL8 1455 aa28.73■■■□□ 2.19
RPS28-202ENST00000449223 COL17A1Q9UMD9 1497 aaPredicted RBP28.73■■■□□ 2.19
RPS28-202ENST00000449223 RAPGEF3O95398 923 aa28.73■■■□□ 2.19
RPS28-202ENST00000449223 ERBINQ96RT1 1412 aa28.71■■■□□ 2.19
RPS28-202ENST00000449223 ABCA6Q8N139 1617 aa28.68■■■□□ 2.18
RPS28-202ENST00000449223 DIP2CQ9Y2E4 1556 aa28.66■■■□□ 2.18
RPS28-202ENST00000449223 EIF2AK4Q9P2K8 1649 aaKnown RBP28.65■■■□□ 2.18
RPS28-202ENST00000449223 DHX29Q7Z478 1369 aaKnown RBP28.62■■■□□ 2.17
RPS28-202ENST00000449223 BCORL1Q5H9F3 1711 aa28.61■■■□□ 2.17
RPS28-202ENST00000449223 UNC13BO14795 1591 aa28.6■■■□□ 2.17
RPS28-202ENST00000449223 A2MP01023 1474 aa28.6■■■□□ 2.17
RPS28-202ENST00000449223 REREQ9P2R6 1566 aa28.6■■■□□ 2.17
RPS28-202ENST00000449223 DHX57Q6P158 1386 aaKnown RBP28.59■■■□□ 2.17
RPS28-202ENST00000449223 KDM5DQ9BY66 1539 aa28.59■■■□□ 2.17
RPS28-202ENST00000449223 YEATS2Q9ULM3 1422 aa28.58■■■□□ 2.17
RPS28-202ENST00000449223 ARHGEF40Q8TER5 1519 aa28.58■■■□□ 2.16
RPS28-202ENST00000449223 DEPDC5O75140 1603 aa28.57■■■□□ 2.16
RPS28-202ENST00000449223 MYT1LQ9UL68 1186 aa28.54■■■□□ 2.16
RPS28-202ENST00000449223 ATP10AO60312 1499 aa28.52■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms