RNA–Protein interactions for RNA: ENST00000440127.1

HMGB3P11-201, Transcript of high mobility group box 3 pseudogene 11, humanhuman

BASIC

Gene HMGB3P11, Length 604 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P11-201ENST00000440127 DOK7Q18PE1 504 aa8.51□□□□□ -1.05
HMGB3P11-201ENST00000440127 SPNS2Q8IVW8 549 aa8.51□□□□□ -1.05
HMGB3P11-201ENST00000440127 MMRN1Q13201 1228 aa8.5□□□□□ -1.05
HMGB3P11-201ENST00000440127 EMP3P54852 163 aa8.49□□□□□ -1.05
HMGB3P11-201ENST00000440127 ZNF710Q8N1W2 664 aa8.47□□□□□ -1.05
HMGB3P11-201ENST00000440127 TMC2Q8TDI7 906 aa8.46□□□□□ -1.06
HMGB3P11-201ENST00000440127 FAM205CA6NFA0 338 aa8.44□□□□□ -1.06
HMGB3P11-201ENST00000440127 ZSWIM6Q9HCJ5 1215 aa8.43□□□□□ -1.06
HMGB3P11-201ENST00000440127 HS3ST6Q96QI5 342 aa8.41□□□□□ -1.06
HMGB3P11-201ENST00000440127 RTN4Q9NQC3 1192 aaKnown RBP8.41□□□□□ -1.06
HMGB3P11-201ENST00000440127 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.39□□□□□ -1.07
HMGB3P11-201ENST00000440127 POTEB3A0JP26 581 aa8.38□□□□□ -1.07
HMGB3P11-201ENST00000440127 NKX1-1Q15270 411 aaPredicted RBP8.38□□□□□ -1.07
HMGB3P11-201ENST00000440127 POTEBQ6S5H4 581 aa8.38□□□□□ -1.07
HMGB3P11-201ENST00000440127 BBXQ8WY36 941 aaPredicted RBP8.38□□□□□ -1.07
HMGB3P11-201ENST00000440127 TMEM92Q6UXU6 159 aa8.37□□□□□ -1.07
HMGB3P11-201ENST00000440127 C2orf72A6NCS6 295 aa8.36□□□□□ -1.07
HMGB3P11-201ENST00000440127 PPP1R37O75864 691 aa8.36□□□□□ -1.07
HMGB3P11-201ENST00000440127 HOXB3P14651 431 aaPredicted RBP8.36□□□□□ -1.07
HMGB3P11-201ENST00000440127 KIF3CO14782 793 aa8.35□□□□□ -1.07
HMGB3P11-201ENST00000440127 HOXB1P14653 301 aaPredicted RBP8.34□□□□□ -1.07
HMGB3P11-201ENST00000440127 KRTAP3-3Q9BYR6 98 aa8.34□□□□□ -1.07
HMGB3P11-201ENST00000440127 KRTAP3-2Q9BYR7 98 aa8.34□□□□□ -1.07
HMGB3P11-201ENST00000440127 GTPBP6O43824 516 aaPredicted RBP8.33□□□□□ -1.08
HMGB3P11-201ENST00000440127 GPHNQ9NQX3 736 aaPredicted RBP8.32□□□□□ -1.08
HMGB3P11-201ENST00000440127 SLC34A2O95436 690 aa8.31□□□□□ -1.08
HMGB3P11-201ENST00000440127 PDE4AP27815 886 aa8.31□□□□□ -1.08
HMGB3P11-201ENST00000440127 ERBB3P21860 1342 aa8.3□□□□□ -1.08
HMGB3P11-201ENST00000440127 FOXK1P85037 733 aa8.3□□□□□ -1.08
HMGB3P11-201ENST00000440127 TBC1D12O60347 775 aa8.29□□□□□ -1.08
HMGB3P11-201ENST00000440127 SPRYD3Q8NCJ5 442 aa8.29□□□□□ -1.08
HMGB3P11-201ENST00000440127 ZNF316A6NFI3 1004 aaPredicted RBP8.28□□□□□ -1.08
HMGB3P11-201ENST00000440127 PLPP6Q8IY26 295 aa8.26□□□□□ -1.09
HMGB3P11-201ENST00000440127 PSDA5PKW4 1024 aaPredicted RBP8.25□□□□□ -1.09
HMGB3P11-201ENST00000440127 GPR153Q6NV75 609 aa8.25□□□□□ -1.09
HMGB3P11-201ENST00000440127 CRISPLD2Q9H0B8 497 aa8.25□□□□□ -1.09
HMGB3P11-201ENST00000440127 ARSIQ5FYB1 569 aa8.24□□□□□ -1.09
HMGB3P11-201ENST00000440127 PPP1R15BQ5SWA1 713 aa8.24□□□□□ -1.09
HMGB3P11-201ENST00000440127 DSG2Q14126 1118 aa8.23□□□□□ -1.09
HMGB3P11-201ENST00000440127 DDX27Q96GQ7 796 aaKnown RBP8.23□□□□□ -1.09
HMGB3P11-201ENST00000440127 PCDHGA4Q9Y5G9 962 aa8.23□□□□□ -1.09
HMGB3P11-201ENST00000440127 VARS2Q5ST30 1063 aaKnown RBP8.22□□□□□ -1.09
HMGB3P11-201ENST00000440127 PTCD2Q8WV60 388 aaKnown RBP8.22□□□□□ -1.09
HMGB3P11-201ENST00000440127 LARP6Q9BRS8 491 aaKnown RBP8.2□□□□□ -1.1
HMGB3P11-201ENST00000440127 RNF166Q96A37 237 aaPredicted RBP8.19□□□□□ -1.1
HMGB3P11-201ENST00000440127 NUDT7P0C024 238 aa8.18□□□□□ -1.1
HMGB3P11-201ENST00000440127 MFSD10Q14728 455 aa8.18□□□□□ -1.1
HMGB3P11-201ENST00000440127 PAXIP1Q6ZW49 1069 aaPredicted RBP8.18□□□□□ -1.1
HMGB3P11-201ENST00000440127 CFAP44Q96MT7 982 aa8.18□□□□□ -1.1
HMGB3P11-201ENST00000440127 NCKAP5LQ9HCH0 1330 aa8.18□□□□□ -1.1
HMGB3P11-201ENST00000440127 PBX2P40425 430 aa8.17□□□□□ -1.1
HMGB3P11-201ENST00000440127 ZNF687Q8N1G0 1237 aa8.17□□□□□ -1.1
HMGB3P11-201ENST00000440127 KCNH8Q96L42 1107 aa8.17□□□□□ -1.1
HMGB3P11-201ENST00000440127 MYT1LQ9UL68 1186 aa8.15□□□□□ -1.1
HMGB3P11-201ENST00000440127 PPP4R3BQ5MIZ7 849 aa8.14□□□□□ -1.11
HMGB3P11-201ENST00000440127 OXER1Q8TDS5 423 aa8.14□□□□□ -1.11
HMGB3P11-201ENST00000440127 PTGER2P43116 358 aa8.13□□□□□ -1.11
HMGB3P11-201ENST00000440127 UPF1Q92900 1129 aaKnown RBP eCLIP8.13□□□□□ -1.11
HMGB3P11-201ENST00000440127 KHSRPQ92945 711 aaKnown RBP eCLIP8.13□□□□□ -1.11
HMGB3P11-201ENST00000440127 WDR70Q9NW82 654 aa8.13□□□□□ -1.11
HMGB3P11-201ENST00000440127 LHX6Q9UPM6 363 aa8.12□□□□□ -1.11
HMGB3P11-201ENST00000440127 MAP3K9P80192 1104 aa8.11□□□□□ -1.11
HMGB3P11-201ENST00000440127 ANKRD13DQ6ZTN6 518 aa8.11□□□□□ -1.11
HMGB3P11-201ENST00000440127 CADPS2Q86UW7 1296 aa8.08□□□□□ -1.12
HMGB3P11-201ENST00000440127 KDM4FA0A1W2PPD8 638 aa8.06□□□□□ -1.12
HMGB3P11-201ENST00000440127 EVI5O60447 810 aa8.06□□□□□ -1.12
HMGB3P11-201ENST00000440127 CAMK2BQ13554 666 aa8.06□□□□□ -1.12
HMGB3P11-201ENST00000440127 JPH4Q96JJ6 628 aa8.06□□□□□ -1.12
HMGB3P11-201ENST00000440127 ARHGAP33O14559 1287 aa8.05□□□□□ -1.12
HMGB3P11-201ENST00000440127 LSM11P83369 360 aaKnown RBP eCLIP8.05□□□□□ -1.12
HMGB3P11-201ENST00000440127 ZNF454Q8N9F8 522 aa8.05□□□□□ -1.12
HMGB3P11-201ENST00000440127 SPDYE16A6NNV3 312 aaPredicted RBP8.02□□□□□ -1.13
HMGB3P11-201ENST00000440127 E2F4Q16254 413 aa8.02□□□□□ -1.13
HMGB3P11-201ENST00000440127 ANO8Q9HCE9 1232 aaPredicted RBP8.02□□□□□ -1.13
HMGB3P11-201ENST00000440127 FOSBP53539 338 aa8.01□□□□□ -1.13
HMGB3P11-201ENST00000440127 FBXW7Q969H0 707 aa8.01□□□□□ -1.13
HMGB3P11-201ENST00000440127 EMILIN3Q9NT22 766 aa8.01□□□□□ -1.13
HMGB3P11-201ENST00000440127 TK2O00142 265 aa8□□□□□ -1.13
HMGB3P11-201ENST00000440127 PTPREP23469 700 aa8□□□□□ -1.13
HMGB3P11-201ENST00000440127 ZDHHC16Q969W1 377 aa8□□□□□ -1.13
HMGB3P11-201ENST00000440127 STAC3Q96MF2 364 aa8□□□□□ -1.13
HMGB3P11-201ENST00000440127 BCL2L12Q9HB09 334 aa8□□□□□ -1.13
HMGB3P11-201ENST00000440127 DPYSL4O14531 572 aa7.99□□□□□ -1.13
HMGB3P11-201ENST00000440127 EPAS1Q99814 870 aa7.99□□□□□ -1.13
HMGB3P11-201ENST00000440127 PHF14O94880 888 aa7.98□□□□□ -1.13
HMGB3P11-201ENST00000440127 TYW1BQ6NUM6 668 aa7.98□□□□□ -1.13
HMGB3P11-201ENST00000440127 KCNK17Q96T54 332 aa7.98□□□□□ -1.13
HMGB3P11-201ENST00000440127 PLCB2Q00722 1185 aa7.97□□□□□ -1.13
HMGB3P11-201ENST00000440127 P3H3Q8IVL6 736 aa7.97□□□□□ -1.13
HMGB3P11-201ENST00000440127 AXIN2Q9Y2T1 843 aa7.97□□□□□ -1.13
HMGB3P11-201ENST00000440127 ARIH1Q9Y4X5 557 aaPredicted RBP7.97□□□□□ -1.13
HMGB3P11-201ENST00000440127 PDIA6Q15084 440 aa7.96□□□□□ -1.14
HMGB3P11-201ENST00000440127 ADGRD1Q6QNK2 874 aa7.95□□□□□ -1.14
HMGB3P11-201ENST00000440127 SLC4A5Q9BY07 1137 aa7.94□□□□□ -1.14
HMGB3P11-201ENST00000440127 TSHZ2Q9NRE2 1034 aa7.93□□□□□ -1.14
HMGB3P11-201ENST00000440127 PPP1R3GB7ZBB8 358 aa7.92□□□□□ -1.14
HMGB3P11-201ENST00000440127 PSEN2P49810 448 aa7.92□□□□□ -1.14
HMGB3P11-201ENST00000440127 NBPF3Q9H094 633 aa7.91□□□□□ -1.14
HMGB3P11-201ENST00000440127 PCDHGA10Q9Y5H3 936 aa7.91□□□□□ -1.14
HMGB3P11-201ENST00000440127 POTEEQ6S8J3 1075 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms