RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 SUPT16HQ9Y5B9 1047 aaKnown RBP12.48□□□□□ -0.41
HPS4-206ENST00000439453 FRMPD1Q5SYB0 1578 aa12.48□□□□□ -0.41
HPS4-206ENST00000439453 CD109Q6YHK3 1445 aa12.47□□□□□ -0.41
HPS4-206ENST00000439453 RICTORQ6R327 1708 aa12.46□□□□□ -0.41
HPS4-206ENST00000439453 ARAP3Q8WWN8 1544 aa12.46□□□□□ -0.42
HPS4-206ENST00000439453 MAP3K1Q13233 1512 aa12.45□□□□□ -0.42
HPS4-206ENST00000439453 KCNH8Q96L42 1107 aa12.45□□□□□ -0.42
HPS4-206ENST00000439453 TEX14Q8IWB6 1497 aa12.45□□□□□ -0.42
HPS4-206ENST00000439453 EHBP1L1Q8N3D4 1523 aa12.45□□□□□ -0.42
HPS4-206ENST00000439453 CFAP74Q9C0B2 1584 aa12.45□□□□□ -0.42
HPS4-206ENST00000439453 PLEKHD1A6NEE1 506 aa12.42□□□□□ -0.42
HPS4-206ENST00000439453 TSHZ2Q9NRE2 1034 aa12.42□□□□□ -0.42
HPS4-206ENST00000439453 NEO1Q92859 1461 aa12.41□□□□□ -0.42
HPS4-206ENST00000439453 SUPT6HQ7KZ85 1726 aaKnown RBP12.41□□□□□ -0.42
HPS4-206ENST00000439453 ANP32EQ9BTT0 268 aa12.41□□□□□ -0.42
HPS4-206ENST00000439453 PLCH2O75038 1416 aa12.4□□□□□ -0.42
HPS4-206ENST00000439453 ITSN2Q9NZM3 1697 aa12.4□□□□□ -0.42
HPS4-206ENST00000439453 ATP1B4Q9UN42 357 aaPredicted RBP12.4□□□□□ -0.42
HPS4-206ENST00000439453 LRRC9Q6ZRR7 1453 aa12.4□□□□□ -0.42
HPS4-206ENST00000439453 SAMD9LQ8IVG5 1584 aa12.39□□□□□ -0.43
HPS4-206ENST00000439453 FANCAO15360 1455 aa12.39□□□□□ -0.43
HPS4-206ENST00000439453 SIGLEC1Q9BZZ2 1709 aa12.38□□□□□ -0.43
HPS4-206ENST00000439453 GPATCH8Q9UKJ3 1502 aaKnown RBP12.38□□□□□ -0.43
HPS4-206ENST00000439453 ABCC1P33527 1531 aa12.37□□□□□ -0.43
HPS4-206ENST00000439453 ARHGEF12Q9NZN5 1544 aa12.36□□□□□ -0.43
HPS4-206ENST00000439453 ZMYM4Q5VZL5 1548 aa12.36□□□□□ -0.43
HPS4-206ENST00000439453 AKNAQ7Z591 1439 aa12.35□□□□□ -0.43
HPS4-206ENST00000439453 NCOA2Q15596 1464 aa12.35□□□□□ -0.43
HPS4-206ENST00000439453 ARHGAP5Q13017 1502 aa12.35□□□□□ -0.43
HPS4-206ENST00000439453 KDM5CP41229 1560 aa12.35□□□□□ -0.43
HPS4-206ENST00000439453 CDK11AQ9UQ88 783 aaPredicted RBP12.34□□□□□ -0.43
HPS4-206ENST00000439453 APLP2Q06481 763 aa12.34□□□□□ -0.43
HPS4-206ENST00000439453 KANK4Q5T7N3 995 aaPredicted RBP12.34□□□□□ -0.43
HPS4-206ENST00000439453 PHLDB1Q86UU1 1377 aa12.33□□□□□ -0.44
HPS4-206ENST00000439453 MTUS2Q5JR59 1369 aa12.33□□□□□ -0.44
HPS4-206ENST00000439453 ADGRL1O94910 1474 aa12.32□□□□□ -0.44
HPS4-206ENST00000439453 DHX57Q6P158 1386 aaKnown RBP12.31□□□□□ -0.44
HPS4-206ENST00000439453 POGZQ7Z3K3 1410 aa12.31□□□□□ -0.44
HPS4-206ENST00000439453 ARHGEF40Q8TER5 1519 aa12.31□□□□□ -0.44
HPS4-206ENST00000439453 BCL11AQ9H165 835 aa12.31□□□□□ -0.44
HPS4-206ENST00000439453 SYCP2Q9BX26 1530 aa12.3□□□□□ -0.44
HPS4-206ENST00000439453 KIDINS220Q9ULH0 1771 aa12.3□□□□□ -0.44
HPS4-206ENST00000439453 DENND4BO75064 1496 aaPredicted RBP12.28□□□□□ -0.44
HPS4-206ENST00000439453 ABCA6Q8N139 1617 aa12.28□□□□□ -0.44
HPS4-206ENST00000439453 INO80Q9ULG1 1556 aaPredicted RBP12.28□□□□□ -0.44
HPS4-206ENST00000439453 HECW2Q9P2P5 1572 aa12.28□□□□□ -0.44
HPS4-206ENST00000439453 SCAPERQ9BY12 1400 aa12.27□□□□□ -0.45
HPS4-206ENST00000439453 CROCC2H7BZ55 1655 aa12.27□□□□□ -0.45
HPS4-206ENST00000439453 TRAPPC8Q9Y2L5 1435 aa12.27□□□□□ -0.45
HPS4-206ENST00000439453 MBD5Q9P267 1494 aa12.27□□□□□ -0.45
HPS4-206ENST00000439453 RAPGEF3O95398 923 aa12.26□□□□□ -0.45
HPS4-206ENST00000439453 DIP2CQ9Y2E4 1556 aa12.26□□□□□ -0.45
HPS4-206ENST00000439453 CAMSAP2Q08AD1 1489 aa12.26□□□□□ -0.45
HPS4-206ENST00000439453 CCNB3Q8WWL7 1395 aa12.25□□□□□ -0.45
HPS4-206ENST00000439453 ADGBQ8N7X0 1667 aa12.25□□□□□ -0.45
HPS4-206ENST00000439453 ZNF518AQ6AHZ1 1483 aa12.25□□□□□ -0.45
HPS4-206ENST00000439453 ARHGEF5Q12774 1597 aa12.24□□□□□ -0.45
HPS4-206ENST00000439453 YEATS2Q9ULM3 1422 aa12.24□□□□□ -0.45
HPS4-206ENST00000439453 ZFYVE16Q7Z3T8 1539 aa12.24□□□□□ -0.45
HPS4-206ENST00000439453 PTPN23Q9H3S7 1636 aa12.24□□□□□ -0.45
HPS4-206ENST00000439453 KIAA1107Q9UPP5 1409 aa12.24□□□□□ -0.45
HPS4-206ENST00000439453 EFCAB2Q5VUJ9 269 aa12.23□□□□□ -0.45
HPS4-206ENST00000439453 MYOM3Q5VTT5 1437 aa12.23□□□□□ -0.45
HPS4-206ENST00000439453 REREQ9P2R6 1566 aa12.23□□□□□ -0.45
HPS4-206ENST00000439453 ZNF644Q9H582 1327 aaPredicted RBP12.22□□□□□ -0.45
HPS4-206ENST00000439453 MAGI2Q86UL8 1455 aa12.22□□□□□ -0.45
HPS4-206ENST00000439453 BCORL1Q5H9F3 1711 aa12.22□□□□□ -0.45
HPS4-206ENST00000439453 TCOF1Q13428 1488 aaKnown RBP12.22□□□□□ -0.45
HPS4-206ENST00000439453 MLH3Q9UHC1 1453 aa12.22□□□□□ -0.45
HPS4-206ENST00000439453 ADAMTSL3P82987 1691 aa12.21□□□□□ -0.46
HPS4-206ENST00000439453 PLXNC1O60486 1568 aa12.2□□□□□ -0.46
HPS4-206ENST00000439453 PLEKHH2Q8IVE3 1493 aa12.2□□□□□ -0.46
HPS4-206ENST00000439453 MIA2Q96PC5 1412 aa12.2□□□□□ -0.46
HPS4-206ENST00000439453 MAST1Q9Y2H9 1570 aa12.2□□□□□ -0.46
HPS4-206ENST00000439453 BCANQ96GW7 911 aa12.2□□□□□ -0.46
HPS4-206ENST00000439453 ATP7AQ04656 1500 aa12.19□□□□□ -0.46
HPS4-206ENST00000439453 DNMT1P26358 1616 aaKnown RBP12.19□□□□□ -0.46
HPS4-206ENST00000439453 AFAP1Q8N556 730 aa12.18□□□□□ -0.46
HPS4-206ENST00000439453 FGD6Q6ZV73 1430 aa12.18□□□□□ -0.46
HPS4-206ENST00000439453 CFDP1Q9UEE9 299 aaPredicted RBP12.18□□□□□ -0.46
HPS4-206ENST00000439453 FKBP8Q14318 412 aa12.17□□□□□ -0.46
HPS4-206ENST00000439453 CCDC141Q6ZP82 1450 aa12.16□□□□□ -0.46
HPS4-206ENST00000439453 HNRNPMP52272 730 aaKnown RBP eCLIP12.15□□□□□ -0.46
HPS4-206ENST00000439453 ATP10AO60312 1499 aa12.14□□□□□ -0.47
HPS4-206ENST00000439453 MADDQ8WXG6 1647 aa12.14□□□□□ -0.47
HPS4-206ENST00000439453 C9orf84Q5VXU9 1444 aa12.14□□□□□ -0.47
HPS4-206ENST00000439453 KDM4FA0A1W2PPD8 638 aa12.14□□□□□ -0.47
HPS4-206ENST00000439453 ZNF777Q9ULD5 760 aaPredicted RBP12.14□□□□□ -0.47
HPS4-206ENST00000439453 FER1L4A9Z1Z3 1794 aa12.14□□□□□ -0.47
HPS4-206ENST00000439453 RRBP1Q9P2E9 1410 aaKnown RBP12.13□□□□□ -0.47
HPS4-206ENST00000439453 AGLP35573 1532 aa12.13□□□□□ -0.47
HPS4-206ENST00000439453 RBM19Q9Y4C8 960 aaKnown RBP12.13□□□□□ -0.47
HPS4-206ENST00000439453 RTEL1-TNFRSF6BF6WH68 1400 aa12.12□□□□□ -0.47
HPS4-206ENST00000439453 SHANK2Q9UPX8 1470 aa12.12□□□□□ -0.47
HPS4-206ENST00000439453 ABCC5O15440 1437 aa12.11□□□□□ -0.47
HPS4-206ENST00000439453 RIMS1Q86UR5 1692 aaKnown RBP12.1□□□□□ -0.47
HPS4-206ENST00000439453 DAPK1P53355 1430 aa12.1□□□□□ -0.47
HPS4-206ENST00000439453 MROH1Q8NDA8 1641 aa12.09□□□□□ -0.47
HPS4-206ENST00000439453 NEFLP07196 543 aa12.09□□□□□ -0.47
HPS4-206ENST00000439453 PTPRKQ15262 1439 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms