RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 GPHNQ9NQX3 736 aaPredicted RBP12.3□□□□□ -0.44
USP54-206ENST00000433394 CAMK2BQ13554 666 aa12.28□□□□□ -0.44
USP54-206ENST00000433394 ILDR1Q86SU0 546 aaPredicted RBP12.27□□□□□ -0.45
USP54-206ENST00000433394 ZC3H15Q8WU90 426 aaKnown RBP12.26□□□□□ -0.45
USP54-206ENST00000433394 TMEM132AQ24JP5 1023 aa12.25□□□□□ -0.45
USP54-206ENST00000433394 IER5LQ5T953 404 aa12.24□□□□□ -0.45
USP54-206ENST00000433394 ERICH6Q7L0X2 663 aa12.23□□□□□ -0.45
USP54-206ENST00000433394 MICALL2Q8IY33 904 aa12.23□□□□□ -0.45
USP54-206ENST00000433394 OCEL1Q9H607 264 aa12.22□□□□□ -0.45
USP54-206ENST00000433394 SPDYE16A6NNV3 312 aaPredicted RBP12.21□□□□□ -0.45
USP54-206ENST00000433394 PELP1Q8IZL8 1130 aaKnown RBP12.21□□□□□ -0.45
USP54-206ENST00000433394 PLCG2P16885 1265 aa12.2□□□□□ -0.46
USP54-206ENST00000433394 BOLA1Q9Y3E2 137 aa12.19□□□□□ -0.46
USP54-206ENST00000433394 ATN1P54259 1190 aaPredicted RBP12.18□□□□□ -0.46
USP54-206ENST00000433394 L3MBTL3Q96JM7 780 aaPredicted RBP12.18□□□□□ -0.46
USP54-206ENST00000433394 POTEB2H3BUK9 544 aa12.17□□□□□ -0.46
USP54-206ENST00000433394 DPY19L2Q6NUT2 758 aa12.17□□□□□ -0.46
USP54-206ENST00000433394 FOXK1P85037 733 aa12.16□□□□□ -0.46
USP54-206ENST00000433394 DSG2Q14126 1118 aa12.16□□□□□ -0.46
USP54-206ENST00000433394 GTF3C3Q9Y5Q9 886 aa12.16□□□□□ -0.46
USP54-206ENST00000433394 ATMINO43313 823 aaPredicted RBP12.15□□□□□ -0.46
USP54-206ENST00000433394 ASTLQ6HA08 431 aaPredicted RBP12.15□□□□□ -0.46
USP54-206ENST00000433394 GPIHBP1Q8IV16 184 aa12.15□□□□□ -0.46
USP54-206ENST00000433394 DPYSL4O14531 572 aa12.14□□□□□ -0.47
USP54-206ENST00000433394 PDCD7Q8N8D1 485 aaKnown RBP12.14□□□□□ -0.47
USP54-206ENST00000433394 SEC24BO95487 1268 aa12.13□□□□□ -0.47
USP54-206ENST00000433394 IRX5P78411 483 aaPredicted RBP12.13□□□□□ -0.47
USP54-206ENST00000433394 NEUROD2Q15784 382 aa12.13□□□□□ -0.47
USP54-206ENST00000433394 KRI1Q8N9T8 703 aaKnown RBP12.12□□□□□ -0.47
USP54-206ENST00000433394 OTUD5Q96G74 571 aa12.12□□□□□ -0.47
USP54-206ENST00000433394 SLC24A3Q9HC58 644 aa12.12□□□□□ -0.47
USP54-206ENST00000433394 ZMYND10O75800 440 aa12.11□□□□□ -0.47
USP54-206ENST00000433394 PLPP6Q8IY26 295 aa12.11□□□□□ -0.47
USP54-206ENST00000433394 DAXXQ9UER7 740 aaPredicted RBP12.11□□□□□ -0.47
USP54-206ENST00000433394 MAP3K9P80192 1104 aa12.1□□□□□ -0.47
USP54-206ENST00000433394 PDIA6Q15084 440 aa12.1□□□□□ -0.47
USP54-206ENST00000433394 METRNQ9UJH8 293 aa12.09□□□□□ -0.47
USP54-206ENST00000433394 BRPF1P55201 1214 aaPredicted RBP12.08□□□□□ -0.48
USP54-206ENST00000433394 TMEM121BQ9BXQ6 578 aaPredicted RBP12.08□□□□□ -0.48
USP54-206ENST00000433394 C2orf72A6NCS6 295 aa12.07□□□□□ -0.48
USP54-206ENST00000433394 C7P10643 843 aa12.07□□□□□ -0.48
USP54-206ENST00000433394 MLLT3P42568 568 aaPredicted RBP12.07□□□□□ -0.48
USP54-206ENST00000433394 BARGINQ6ZT62 677 aa12.07□□□□□ -0.48
USP54-206ENST00000433394 SLC39A7Q92504 469 aa12.07□□□□□ -0.48
USP54-206ENST00000433394 EMILIN3Q9NT22 766 aa12.07□□□□□ -0.48
USP54-206ENST00000433394 ZNF316A6NFI3 1004 aaPredicted RBP12.06□□□□□ -0.48
USP54-206ENST00000433394 RBM26Q5T8P6 1007 aaKnown RBP12.06□□□□□ -0.48
USP54-206ENST00000433394 TBC1D12O60347 775 aa12.04□□□□□ -0.48
USP54-206ENST00000433394 AK7Q96M32 723 aa12.04□□□□□ -0.48
USP54-206ENST00000433394 KIF3CO14782 793 aa12□□□□□ -0.49
USP54-206ENST00000433394 GRXCR2A6NFK2 248 aa11.99□□□□□ -0.49
USP54-206ENST00000433394 POTEJP0CG39 1038 aa11.99□□□□□ -0.49
USP54-206ENST00000433394 C3orf67Q6ZVT6 689 aa11.99□□□□□ -0.49
USP54-206ENST00000433394 UPF1Q92900 1129 aaKnown RBP eCLIP11.98□□□□□ -0.49
USP54-206ENST00000433394 NUTM2FA1L443 756 aa11.96□□□□□ -0.49
USP54-206ENST00000433394 POTEFA5A3E0 1075 aa11.91□□□□□ -0.5
USP54-206ENST00000433394 MAMSTRQ6ZN01 415 aa11.91□□□□□ -0.5
USP54-206ENST00000433394 C14orf37Q86TY3 774 aa11.91□□□□□ -0.5
USP54-206ENST00000433394 OXER1Q8TDS5 423 aa11.91□□□□□ -0.5
USP54-206ENST00000433394 TIMELESSQ9UNS1 1208 aa11.91□□□□□ -0.5
USP54-206ENST00000433394 MINK1Q8N4C8 1332 aaPredicted RBP11.88□□□□□ -0.51
USP54-206ENST00000433394 FCHSD2O94868 740 aa11.88□□□□□ -0.51
USP54-206ENST00000433394 PTGER2P43116 358 aa11.88□□□□□ -0.51
USP54-206ENST00000433394 COLQQ9Y215 455 aaPredicted RBP11.88□□□□□ -0.51
USP54-206ENST00000433394 EVI5O60447 810 aa11.87□□□□□ -0.51
USP54-206ENST00000433394 DDX12PQ92771 950 aa11.86□□□□□ -0.51
USP54-206ENST00000433394 TRIM66O15016 1216 aa11.85□□□□□ -0.51
USP54-206ENST00000433394 HIC1Q14526 733 aa11.85□□□□□ -0.51
USP54-206ENST00000433394 PDE4DQ08499 809 aa11.84□□□□□ -0.51
USP54-206ENST00000433394 MAP2K5Q13163 448 aa11.84□□□□□ -0.51
USP54-206ENST00000433394 TMEM92Q6UXU6 159 aa11.84□□□□□ -0.51
USP54-206ENST00000433394 SCUBE2Q9NQ36 999 aa11.84□□□□□ -0.51
USP54-206ENST00000433394 GNPATO15228 680 aa11.83□□□□□ -0.52
USP54-206ENST00000433394 OSBPP22059 807 aa11.83□□□□□ -0.52
USP54-206ENST00000433394 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.83□□□□□ -0.52
USP54-206ENST00000433394 PTCD2Q8WV60 388 aaKnown RBP11.82□□□□□ -0.52
USP54-206ENST00000433394 KDM4CQ9H3R0 1056 aa11.82□□□□□ -0.52
USP54-206ENST00000433394 POTEMA6NI47 508 aa11.81□□□□□ -0.52
USP54-206ENST00000433394 GPBP1L1Q9HC44 474 aaPredicted RBP11.8□□□□□ -0.52
USP54-206ENST00000433394 SLC34A2O95436 690 aa11.79□□□□□ -0.52
USP54-206ENST00000433394 PLSCR2Q9NRY7 297 aa11.79□□□□□ -0.52
USP54-206ENST00000433394 IRF6O14896 467 aa11.78□□□□□ -0.52
USP54-206ENST00000433394 GPR37O15354 613 aa11.78□□□□□ -0.52
USP54-206ENST00000433394 POTEGQ6S5H5 508 aa11.78□□□□□ -0.52
USP54-206ENST00000433394 EPAS1Q99814 870 aa11.78□□□□□ -0.52
USP54-206ENST00000433394 IL27Q8NEV9 243 aa11.77□□□□□ -0.53
USP54-206ENST00000433394 CCDC102AQ96A19 550 aa11.77□□□□□ -0.53
USP54-206ENST00000433394 DDRGK1Q96HY6 314 aa11.75□□□□□ -0.53
USP54-206ENST00000433394 PHF14O94880 888 aa11.74□□□□□ -0.53
USP54-206ENST00000433394 MAP3K7O43318 606 aa11.73□□□□□ -0.53
USP54-206ENST00000433394 TTLL12Q14166 644 aaPredicted RBP11.73□□□□□ -0.53
USP54-206ENST00000433394 FAM163AQ96GL9 167 aaPredicted RBP11.73□□□□□ -0.53
USP54-206ENST00000433394 ANO8Q9HCE9 1232 aaPredicted RBP11.72□□□□□ -0.53
USP54-206ENST00000433394 PTGDRQ13258 359 aa11.71□□□□□ -0.53
USP54-206ENST00000433394 AMHR2Q16671 573 aa11.71□□□□□ -0.53
USP54-206ENST00000433394 LCE2DQ5TA82 110 aaPredicted RBP11.7□□□□□ -0.54
USP54-206ENST00000433394 FBXW7Q969H0 707 aa11.7□□□□□ -0.54
USP54-206ENST00000433394 EN1Q05925 392 aaPredicted RBP11.69□□□□□ -0.54
USP54-206ENST00000433394 TYW1BQ6NUM6 668 aa11.69□□□□□ -0.54
USP54-206ENST00000433394 SLAIN1Q8ND83 568 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms