RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 TMC2Q8TDI7 906 aa9.52□□□□□ -0.89
HMGB3P20-201ENST00000417997 DOK7Q18PE1 504 aa9.51□□□□□ -0.89
HMGB3P20-201ENST00000417997 C2orf72A6NCS6 295 aa9.5□□□□□ -0.89
HMGB3P20-201ENST00000417997 GTPBP6O43824 516 aaPredicted RBP9.5□□□□□ -0.89
HMGB3P20-201ENST00000417997 HOXB3P14651 431 aaPredicted RBP9.49□□□□□ -0.89
HMGB3P20-201ENST00000417997 MARVELD3Q96A59 401 aa9.49□□□□□ -0.89
HMGB3P20-201ENST00000417997 RIMBP2O15034 1052 aa9.48□□□□□ -0.89
HMGB3P20-201ENST00000417997 BBXQ8WY36 941 aaPredicted RBP9.47□□□□□ -0.89
HMGB3P20-201ENST00000417997 EMP3P54852 163 aa9.46□□□□□ -0.9
HMGB3P20-201ENST00000417997 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.45□□□□□ -0.9
HMGB3P20-201ENST00000417997 KIF3CO14782 793 aa9.44□□□□□ -0.9
HMGB3P20-201ENST00000417997 HOXB1P14653 301 aaPredicted RBP9.39□□□□□ -0.91
HMGB3P20-201ENST00000417997 SPRYD3Q8NCJ5 442 aa9.39□□□□□ -0.91
HMGB3P20-201ENST00000417997 CFAP44Q96MT7 982 aa9.39□□□□□ -0.91
HMGB3P20-201ENST00000417997 GPHNQ9NQX3 736 aaPredicted RBP9.39□□□□□ -0.91
HMGB3P20-201ENST00000417997 FAM205CA6NFA0 338 aa9.38□□□□□ -0.91
HMGB3P20-201ENST00000417997 ARSIQ5FYB1 569 aa9.38□□□□□ -0.91
HMGB3P20-201ENST00000417997 PAXIP1Q6ZW49 1069 aaPredicted RBP9.38□□□□□ -0.91
HMGB3P20-201ENST00000417997 PLPP6Q8IY26 295 aa9.38□□□□□ -0.91
HMGB3P20-201ENST00000417997 DSG2Q14126 1118 aa9.37□□□□□ -0.91
HMGB3P20-201ENST00000417997 ZSWIM6Q9HCJ5 1215 aa9.37□□□□□ -0.91
HMGB3P20-201ENST00000417997 FOXK1P85037 733 aa9.36□□□□□ -0.91
HMGB3P20-201ENST00000417997 CDAN1Q8IWY9 1227 aa9.36□□□□□ -0.91
HMGB3P20-201ENST00000417997 ERBB3P21860 1342 aa9.35□□□□□ -0.91
HMGB3P20-201ENST00000417997 PDE4AP27815 886 aa9.35□□□□□ -0.91
HMGB3P20-201ENST00000417997 KHSRPQ92945 711 aaKnown RBP eCLIP9.35□□□□□ -0.91
HMGB3P20-201ENST00000417997 GPR153Q6NV75 609 aa9.34□□□□□ -0.91
HMGB3P20-201ENST00000417997 LARP6Q9BRS8 491 aaKnown RBP9.34□□□□□ -0.91
HMGB3P20-201ENST00000417997 CRISPLD2Q9H0B8 497 aa9.34□□□□□ -0.91
HMGB3P20-201ENST00000417997 NCKAP5LQ9HCH0 1330 aa9.33□□□□□ -0.92
HMGB3P20-201ENST00000417997 HS3ST6Q96QI5 342 aa9.33□□□□□ -0.92
HMGB3P20-201ENST00000417997 PCDH10Q9P2E7 1040 aa9.33□□□□□ -0.92
HMGB3P20-201ENST00000417997 PPP1R15BQ5SWA1 713 aa9.32□□□□□ -0.92
HMGB3P20-201ENST00000417997 CADPS2Q86UW7 1296 aa9.32□□□□□ -0.92
HMGB3P20-201ENST00000417997 PCDHGA4Q9Y5G9 962 aa9.32□□□□□ -0.92
HMGB3P20-201ENST00000417997 PLSCR2Q9NRY7 297 aa9.31□□□□□ -0.92
HMGB3P20-201ENST00000417997 SLC34A2O95436 690 aa9.3□□□□□ -0.92
HMGB3P20-201ENST00000417997 NUDT7P0C024 238 aa9.3□□□□□ -0.92
HMGB3P20-201ENST00000417997 VARS2Q5ST30 1063 aaKnown RBP9.3□□□□□ -0.92
HMGB3P20-201ENST00000417997 DDX27Q96GQ7 796 aaKnown RBP9.3□□□□□ -0.92
HMGB3P20-201ENST00000417997 POTEB3A0JP26 581 aa9.29□□□□□ -0.92
HMGB3P20-201ENST00000417997 POTEBQ6S5H4 581 aa9.29□□□□□ -0.92
HMGB3P20-201ENST00000417997 UPF1Q92900 1129 aaKnown RBP eCLIP9.29□□□□□ -0.92
HMGB3P20-201ENST00000417997 TBC1D12O60347 775 aa9.26□□□□□ -0.93
HMGB3P20-201ENST00000417997 ZNF316A6NFI3 1004 aaPredicted RBP9.25□□□□□ -0.93
HMGB3P20-201ENST00000417997 PTCD2Q8WV60 388 aaKnown RBP9.25□□□□□ -0.93
HMGB3P20-201ENST00000417997 LHX6Q9UPM6 363 aa9.23□□□□□ -0.93
HMGB3P20-201ENST00000417997 MFSD10Q14728 455 aa9.22□□□□□ -0.93
HMGB3P20-201ENST00000417997 OXER1Q8TDS5 423 aa9.21□□□□□ -0.94
HMGB3P20-201ENST00000417997 MAP3K9P80192 1104 aa9.18□□□□□ -0.94
HMGB3P20-201ENST00000417997 ZNF687Q8N1G0 1237 aa9.17□□□□□ -0.94
HMGB3P20-201ENST00000417997 KRTAP3-3Q9BYR6 98 aa9.17□□□□□ -0.94
HMGB3P20-201ENST00000417997 KRTAP3-2Q9BYR7 98 aa9.17□□□□□ -0.94
HMGB3P20-201ENST00000417997 WDR70Q9NW82 654 aa9.17□□□□□ -0.94
HMGB3P20-201ENST00000417997 TSHZ2Q9NRE2 1034 aa9.16□□□□□ -0.94
HMGB3P20-201ENST00000417997 EMILIN3Q9NT22 766 aa9.16□□□□□ -0.94
HMGB3P20-201ENST00000417997 KDM4FA0A1W2PPD8 638 aa9.14□□□□□ -0.95
HMGB3P20-201ENST00000417997 PSDA5PKW4 1024 aaPredicted RBP9.14□□□□□ -0.95
HMGB3P20-201ENST00000417997 EVI5O60447 810 aa9.14□□□□□ -0.95
HMGB3P20-201ENST00000417997 PPP4R3BQ5MIZ7 849 aa9.12□□□□□ -0.95
HMGB3P20-201ENST00000417997 DPYSL4O14531 572 aa9.11□□□□□ -0.95
HMGB3P20-201ENST00000417997 ANKRD13DQ6ZTN6 518 aa9.11□□□□□ -0.95
HMGB3P20-201ENST00000417997 SPNS2Q8IVW8 549 aa9.11□□□□□ -0.95
HMGB3P20-201ENST00000417997 ZNF454Q8N9F8 522 aa9.11□□□□□ -0.95
HMGB3P20-201ENST00000417997 AXIN2Q9Y2T1 843 aa9.11□□□□□ -0.95
HMGB3P20-201ENST00000417997 CAMK2BQ13554 666 aa9.1□□□□□ -0.95
HMGB3P20-201ENST00000417997 PBX2P40425 430 aa9.08□□□□□ -0.96
HMGB3P20-201ENST00000417997 PLCB2Q00722 1185 aa9.08□□□□□ -0.96
HMGB3P20-201ENST00000417997 E2F4Q16254 413 aa9.08□□□□□ -0.96
HMGB3P20-201ENST00000417997 LSM11P83369 360 aaKnown RBP eCLIP9.06□□□□□ -0.96
HMGB3P20-201ENST00000417997 KCNH8Q96L42 1107 aa9.06□□□□□ -0.96
HMGB3P20-201ENST00000417997 ANO8Q9HCE9 1232 aaPredicted RBP9.06□□□□□ -0.96
HMGB3P20-201ENST00000417997 ARHGAP33O14559 1287 aa9.05□□□□□ -0.96
HMGB3P20-201ENST00000417997 FOSBP53539 338 aa9.05□□□□□ -0.96
HMGB3P20-201ENST00000417997 POTEEQ6S8J3 1075 aa9.05□□□□□ -0.96
HMGB3P20-201ENST00000417997 KCNK17Q96T54 332 aa9.05□□□□□ -0.96
HMGB3P20-201ENST00000417997 PSEN2P49810 448 aa9.04□□□□□ -0.96
HMGB3P20-201ENST00000417997 MMRN1Q13201 1228 aa9.04□□□□□ -0.96
HMGB3P20-201ENST00000417997 JPH4Q96JJ6 628 aa9.03□□□□□ -0.96
HMGB3P20-201ENST00000417997 HAP1P54257 671 aaPredicted RBP9.02□□□□□ -0.97
HMGB3P20-201ENST00000417997 ZDHHC16Q969W1 377 aa9.02□□□□□ -0.97
HMGB3P20-201ENST00000417997 DMRTA1Q5VZB9 504 aa9.01□□□□□ -0.97
HMGB3P20-201ENST00000417997 DDX12PQ92771 950 aa9□□□□□ -0.97
HMGB3P20-201ENST00000417997 PTPREP23469 700 aa8.99□□□□□ -0.97
HMGB3P20-201ENST00000417997 ADAM33Q9BZ11 813 aa8.99□□□□□ -0.97
HMGB3P20-201ENST00000417997 BCL2L12Q9HB09 334 aa8.99□□□□□ -0.97
HMGB3P20-201ENST00000417997 PCDHGA10Q9Y5H3 936 aa8.99□□□□□ -0.97
HMGB3P20-201ENST00000417997 SPDYE16A6NNV3 312 aaPredicted RBP8.98□□□□□ -0.97
HMGB3P20-201ENST00000417997 MYT1LQ9UL68 1186 aa8.98□□□□□ -0.97
HMGB3P20-201ENST00000417997 PHF14O94880 888 aa8.97□□□□□ -0.97
HMGB3P20-201ENST00000417997 PDIA6Q15084 440 aa8.97□□□□□ -0.97
HMGB3P20-201ENST00000417997 TYW1BQ6NUM6 668 aa8.97□□□□□ -0.97
HMGB3P20-201ENST00000417997 ADGRD1Q6QNK2 874 aa8.97□□□□□ -0.97
HMGB3P20-201ENST00000417997 RBM33Q96EV2 1170 aaKnown RBP8.96□□□□□ -0.98
HMGB3P20-201ENST00000417997 PTGER2P43116 358 aa8.95□□□□□ -0.98
HMGB3P20-201ENST00000417997 FBXW7Q969H0 707 aa8.95□□□□□ -0.98
HMGB3P20-201ENST00000417997 RNF166Q96A37 237 aaPredicted RBP8.95□□□□□ -0.98
HMGB3P20-201ENST00000417997 STAC3Q96MF2 364 aa8.95□□□□□ -0.98
HMGB3P20-201ENST00000417997 GRXCR2A6NFK2 248 aa8.94□□□□□ -0.98
HMGB3P20-201ENST00000417997 NBR1Q14596 966 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms