RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 CAMK2BQ13554 666 aa12.78□□□□□ -0.36
USP40-202ENST00000409945 DSG2Q14126 1118 aa12.78□□□□□ -0.36
USP40-202ENST00000409945 GPHNQ9NQX3 736 aaPredicted RBP12.78□□□□□ -0.36
USP40-202ENST00000409945 POTEFA5A3E0 1075 aa12.77□□□□□ -0.37
USP40-202ENST00000409945 POTEHQ6S545 545 aa12.77□□□□□ -0.37
USP40-202ENST00000409945 PPP1R15BQ5SWA1 713 aa12.76□□□□□ -0.37
USP40-202ENST00000409945 EMILIN3Q9NT22 766 aa12.76□□□□□ -0.37
USP40-202ENST00000409945 OCEL1Q9H607 264 aa12.76□□□□□ -0.37
USP40-202ENST00000409945 TESPA1A2RU30 521 aaPredicted RBP12.75□□□□□ -0.37
USP40-202ENST00000409945 TMEM121BQ9BXQ6 578 aaPredicted RBP12.75□□□□□ -0.37
USP40-202ENST00000409945 TMEM92Q6UXU6 159 aa12.74□□□□□ -0.37
USP40-202ENST00000409945 POTEIP0CG38 1075 aa12.74□□□□□ -0.37
USP40-202ENST00000409945 CLCN6P51797 869 aa12.72□□□□□ -0.37
USP40-202ENST00000409945 BOLA1Q9Y3E2 137 aa12.72□□□□□ -0.37
USP40-202ENST00000409945 C2orf72A6NCS6 295 aa12.71□□□□□ -0.37
USP40-202ENST00000409945 IER5LQ5T953 404 aa12.71□□□□□ -0.37
USP40-202ENST00000409945 MLLT3P42568 568 aaPredicted RBP12.7□□□□□ -0.38
USP40-202ENST00000409945 KIF3CO14782 793 aa12.69□□□□□ -0.38
USP40-202ENST00000409945 DPYSL4O14531 572 aa12.68□□□□□ -0.38
USP40-202ENST00000409945 ARIH1Q9Y4X5 557 aaPredicted RBP12.68□□□□□ -0.38
USP40-202ENST00000409945 PLCG2P16885 1265 aa12.66□□□□□ -0.38
USP40-202ENST00000409945 FOXK1P85037 733 aa12.66□□□□□ -0.38
USP40-202ENST00000409945 DCBLD2Q96PD2 775 aa12.65□□□□□ -0.38
USP40-202ENST00000409945 ZC3H15Q8WU90 426 aaKnown RBP12.64□□□□□ -0.39
USP40-202ENST00000409945 PLPP6Q8IY26 295 aa12.63□□□□□ -0.39
USP40-202ENST00000409945 TMC2Q8TDI7 906 aa12.63□□□□□ -0.39
USP40-202ENST00000409945 RBM26Q5T8P6 1007 aaKnown RBP12.6□□□□□ -0.39
USP40-202ENST00000409945 SEC24BO95487 1268 aa12.6□□□□□ -0.39
USP40-202ENST00000409945 METRNQ9UJH8 293 aa12.58□□□□□ -0.39
USP40-202ENST00000409945 UPF1Q92900 1129 aaKnown RBP eCLIP12.56□□□□□ -0.4
USP40-202ENST00000409945 PDIA6Q15084 440 aa12.55□□□□□ -0.4
USP40-202ENST00000409945 SLC39A7Q92504 469 aa12.53□□□□□ -0.4
USP40-202ENST00000409945 SLC24A3Q9HC58 644 aa12.52□□□□□ -0.4
USP40-202ENST00000409945 SP7Q8TDD2 431 aaPredicted RBP12.51□□□□□ -0.41
USP40-202ENST00000409945 L3MBTL3Q96JM7 780 aaPredicted RBP12.51□□□□□ -0.41
USP40-202ENST00000409945 G3V3G9 751 aa12.5□□□□□ -0.41
USP40-202ENST00000409945 C7P10643 843 aa12.5□□□□□ -0.41
USP40-202ENST00000409945 TULP1O00294 542 aaPredicted RBP12.49□□□□□ -0.41
USP40-202ENST00000409945 ZMYND10O75800 440 aa12.49□□□□□ -0.41
USP40-202ENST00000409945 OXER1Q8TDS5 423 aa12.46□□□□□ -0.42
USP40-202ENST00000409945 BRPF1P55201 1214 aaPredicted RBP12.45□□□□□ -0.42
USP40-202ENST00000409945 RB1CC1Q8TDY2 1594 aa12.45□□□□□ -0.42
USP40-202ENST00000409945 POTEJP0CG39 1038 aa12.45□□□□□ -0.42
USP40-202ENST00000409945 PRIM1P49642 420 aaKnown RBP12.45□□□□□ -0.42
USP40-202ENST00000409945 GRXCR2A6NFK2 248 aa12.43□□□□□ -0.42
USP40-202ENST00000409945 GPR37O15354 613 aa12.43□□□□□ -0.42
USP40-202ENST00000409945 MAP3K9P80192 1104 aa12.43□□□□□ -0.42
USP40-202ENST00000409945 SMYD5Q6GMV2 418 aa12.43□□□□□ -0.42
USP40-202ENST00000409945 NACADO15069 1562 aa12.41□□□□□ -0.42
USP40-202ENST00000409945 DDX12PQ92771 950 aa12.41□□□□□ -0.42
USP40-202ENST00000409945 SPDYE16A6NNV3 312 aaPredicted RBP12.41□□□□□ -0.42
USP40-202ENST00000409945 GPIHBP1Q8IV16 184 aa12.41□□□□□ -0.42
USP40-202ENST00000409945 POTEB2H3BUK9 544 aa12.4□□□□□ -0.42
USP40-202ENST00000409945 C3orf67Q6ZVT6 689 aa12.39□□□□□ -0.43
USP40-202ENST00000409945 BARGINQ6ZT62 677 aa12.39□□□□□ -0.43
USP40-202ENST00000409945 OSBPP22059 807 aa12.38□□□□□ -0.43
USP40-202ENST00000409945 EVI5O60447 810 aa12.34□□□□□ -0.43
USP40-202ENST00000409945 PTCD2Q8WV60 388 aaKnown RBP12.33□□□□□ -0.44
USP40-202ENST00000409945 FECHP22830 423 aa12.31□□□□□ -0.44
USP40-202ENST00000409945 MYO15BQ96JP2 1530 aa12.31□□□□□ -0.44
USP40-202ENST00000409945 NEUROD2Q15784 382 aa12.31□□□□□ -0.44
USP40-202ENST00000409945 GPBP1L1Q9HC44 474 aaPredicted RBP12.31□□□□□ -0.44
USP40-202ENST00000409945 PTGER2P43116 358 aa12.29□□□□□ -0.44
USP40-202ENST00000409945 NUTM2FA1L443 756 aa12.28□□□□□ -0.44
USP40-202ENST00000409945 SLC34A2O95436 690 aa12.27□□□□□ -0.45
USP40-202ENST00000409945 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.27□□□□□ -0.45
USP40-202ENST00000409945 ZCCHC6Q5VYS8 1495 aaKnown RBP12.26□□□□□ -0.45
USP40-202ENST00000409945 KHSRPQ92945 711 aaKnown RBP eCLIP12.25□□□□□ -0.45
USP40-202ENST00000409945 CDHR5Q9HBB8 845 aa12.25□□□□□ -0.45
USP40-202ENST00000409945 KDM4FA0A1W2PPD8 638 aa12.24□□□□□ -0.45
USP40-202ENST00000409945 ANO8Q9HCE9 1232 aaPredicted RBP12.24□□□□□ -0.45
USP40-202ENST00000409945 KRI1Q8N9T8 703 aaKnown RBP12.23□□□□□ -0.45
USP40-202ENST00000409945 TMEM132AQ24JP5 1023 aa12.23□□□□□ -0.45
USP40-202ENST00000409945 PCDHGA4Q9Y5G9 962 aa12.23□□□□□ -0.45
USP40-202ENST00000409945 DCAF1Q9Y4B6 1507 aa12.22□□□□□ -0.45
USP40-202ENST00000409945 TBC1D12O60347 775 aa12.22□□□□□ -0.45
USP40-202ENST00000409945 TRIM66O15016 1216 aa12.21□□□□□ -0.45
USP40-202ENST00000409945 AK7Q96M32 723 aa12.21□□□□□ -0.45
USP40-202ENST00000409945 PCDHGA10Q9Y5H3 936 aa12.2□□□□□ -0.46
USP40-202ENST00000409945 HOXB3P14651 431 aaPredicted RBP12.19□□□□□ -0.46
USP40-202ENST00000409945 TSR1Q2NL82 804 aaKnown RBP12.19□□□□□ -0.46
USP40-202ENST00000409945 PTGDRQ13258 359 aa12.19□□□□□ -0.46
USP40-202ENST00000409945 NPDC1Q9NQX5 325 aaPredicted RBP12.19□□□□□ -0.46
USP40-202ENST00000409945 RBM33Q96EV2 1170 aaKnown RBP12.18□□□□□ -0.46
USP40-202ENST00000409945 CCDC102AQ96A19 550 aa12.17□□□□□ -0.46
USP40-202ENST00000409945 TIMELESSQ9UNS1 1208 aa12.17□□□□□ -0.46
USP40-202ENST00000409945 GTF3C3Q9Y5Q9 886 aa12.17□□□□□ -0.46
USP40-202ENST00000409945 PDE4DQ08499 809 aa12.15□□□□□ -0.46
USP40-202ENST00000409945 GNPATO15228 680 aa12.15□□□□□ -0.46
USP40-202ENST00000409945 NUDT7P0C024 238 aa12.14□□□□□ -0.47
USP40-202ENST00000409945 EN1Q05925 392 aaPredicted RBP12.14□□□□□ -0.47
USP40-202ENST00000409945 ARSIQ5FYB1 569 aa12.14□□□□□ -0.47
USP40-202ENST00000409945 IRF6O14896 467 aa12.13□□□□□ -0.47
USP40-202ENST00000409945 KDM4CQ9H3R0 1056 aa12.13□□□□□ -0.47
USP40-202ENST00000409945 MAP2K5Q13163 448 aa12.13□□□□□ -0.47
USP40-202ENST00000409945 FCHSD2O94868 740 aa12.12□□□□□ -0.47
USP40-202ENST00000409945 SLAIN1Q8ND83 568 aa12.12□□□□□ -0.47
USP40-202ENST00000409945 MAP3K7O43318 606 aa12.11□□□□□ -0.47
USP40-202ENST00000409945 HIC1Q14526 733 aa12.11□□□□□ -0.47
USP40-202ENST00000409945 PHF14O94880 888 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms