RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 CDC42BPBQ9Y5S2 1711 aa27■■□□□ 1.91
HMGN4-201ENST00000377575 EFCAB2Q5VUJ9 269 aa26.97■■□□□ 1.91
HMGN4-201ENST00000377575 CDC42BPAQ5VT25 1732 aa26.96■■□□□ 1.91
HMGN4-201ENST00000377575 POGZQ7Z3K3 1410 aa26.96■■□□□ 1.91
HMGN4-201ENST00000377575 SCAPERQ9BY12 1400 aa26.95■■□□□ 1.9
HMGN4-201ENST00000377575 ZFYVE16Q7Z3T8 1539 aa26.92■■□□□ 1.9
HMGN4-201ENST00000377575 LOC105371045A0A1W2PR82 267 aa26.92■■□□□ 1.9
HMGN4-201ENST00000377575 MAGI2Q86UL8 1455 aa26.92■■□□□ 1.9
HMGN4-201ENST00000377575 EHBP1L1Q8N3D4 1523 aa26.89■■□□□ 1.89
HMGN4-201ENST00000377575 ZNF518AQ6AHZ1 1483 aa26.88■■□□□ 1.89
HMGN4-201ENST00000377575 MTUS2Q5JR59 1369 aa26.88■■□□□ 1.89
HMGN4-201ENST00000377575 ABCC1P33527 1531 aa26.86■■□□□ 1.89
HMGN4-201ENST00000377575 ITSN2Q9NZM3 1697 aa26.86■■□□□ 1.89
HMGN4-201ENST00000377575 BCORL1Q5H9F3 1711 aa26.85■■□□□ 1.89
HMGN4-201ENST00000377575 KDM5CP41229 1560 aa26.84■■□□□ 1.89
HMGN4-201ENST00000377575 VPS8Q8N3P4 1428 aa26.83■■□□□ 1.89
HMGN4-201ENST00000377575 ADAMTSL3P82987 1691 aa26.83■■□□□ 1.89
HMGN4-201ENST00000377575 YEATS2Q9ULM3 1422 aa26.82■■□□□ 1.88
HMGN4-201ENST00000377575 HECW2Q9P2P5 1572 aa26.81■■□□□ 1.88
HMGN4-201ENST00000377575 GPATCH8Q9UKJ3 1502 aaKnown RBP26.8■■□□□ 1.88
HMGN4-201ENST00000377575 ARID4BQ4LE39 1312 aaPredicted RBP26.79■■□□□ 1.88
HMGN4-201ENST00000377575 TIAM1Q13009 1591 aa26.79■■□□□ 1.88
HMGN4-201ENST00000377575 SAMD9LQ8IVG5 1584 aa26.78■■□□□ 1.88
HMGN4-201ENST00000377575 CCNB3Q8WWL7 1395 aa26.77■■□□□ 1.88
HMGN4-201ENST00000377575 SUPT6HQ7KZ85 1726 aaKnown RBP26.76■■□□□ 1.88
HMGN4-201ENST00000377575 SIGLEC1Q9BZZ2 1709 aa26.76■■□□□ 1.87
HMGN4-201ENST00000377575 MADDQ8WXG6 1647 aa26.75■■□□□ 1.87
HMGN4-201ENST00000377575 ARHGEF12Q9NZN5 1544 aa26.74■■□□□ 1.87
HMGN4-201ENST00000377575 C9orf84Q5VXU9 1444 aa26.73■■□□□ 1.87
HMGN4-201ENST00000377575 ATP10AO60312 1499 aa26.73■■□□□ 1.87
HMGN4-201ENST00000377575 SYCP2Q9BX26 1530 aa26.72■■□□□ 1.87
HMGN4-201ENST00000377575 PLEKHH2Q8IVE3 1493 aa26.71■■□□□ 1.87
HMGN4-201ENST00000377575 AFAP1Q8N556 730 aa26.71■■□□□ 1.87
HMGN4-201ENST00000377575 MLH3Q9UHC1 1453 aa26.7■■□□□ 1.87
HMGN4-201ENST00000377575 TRAPPC8Q9Y2L5 1435 aa26.7■■□□□ 1.86
HMGN4-201ENST00000377575 DIP2CQ9Y2E4 1556 aa26.7■■□□□ 1.86
HMGN4-201ENST00000377575 ABCA6Q8N139 1617 aa26.69■■□□□ 1.86
HMGN4-201ENST00000377575 CFDP1Q9UEE9 299 aaPredicted RBP26.69■■□□□ 1.86
HMGN4-201ENST00000377575 ZNF777Q9ULD5 760 aaPredicted RBP26.69■■□□□ 1.86
HMGN4-201ENST00000377575 RIMS1Q86UR5 1692 aaKnown RBP26.68■■□□□ 1.86
HMGN4-201ENST00000377575 REREQ9P2R6 1566 aa26.67■■□□□ 1.86
HMGN4-201ENST00000377575 MYT1LQ9UL68 1186 aa26.67■■□□□ 1.86
HMGN4-201ENST00000377575 PTPRMP28827 1452 aa26.67■■□□□ 1.86
HMGN4-201ENST00000377575 MAP3K1Q13233 1512 aa26.66■■□□□ 1.86
HMGN4-201ENST00000377575 FER1L4A9Z1Z3 1794 aa26.66■■□□□ 1.86
HMGN4-201ENST00000377575 KIDINS220Q9ULH0 1771 aa26.66■■□□□ 1.86
HMGN4-201ENST00000377575 KIAA1107Q9UPP5 1409 aa26.65■■□□□ 1.86
HMGN4-201ENST00000377575 NCOA2Q15596 1464 aa26.65■■□□□ 1.86
HMGN4-201ENST00000377575 LRRC9Q6ZRR7 1453 aa26.64■■□□□ 1.86
HMGN4-201ENST00000377575 INO80Q9ULG1 1556 aaPredicted RBP26.58■■□□□ 1.85
HMGN4-201ENST00000377575 ATP7AQ04656 1500 aa26.57■■□□□ 1.84
HMGN4-201ENST00000377575 HNRNPMP52272 730 aaKnown RBP eCLIP26.56■■□□□ 1.84
HMGN4-201ENST00000377575 AGLP35573 1532 aa26.55■■□□□ 1.84
HMGN4-201ENST00000377575 MLECQ14165 292 aa26.54■■□□□ 1.84
HMGN4-201ENST00000377575 SPAG9O60271 1321 aaKnown RBP26.54■■□□□ 1.84
HMGN4-201ENST00000377575 CAMSAP2Q08AD1 1489 aa26.52■■□□□ 1.84
HMGN4-201ENST00000377575 MBD5Q9P267 1494 aa26.49■■□□□ 1.83
HMGN4-201ENST00000377575 ZNF644Q9H582 1327 aaPredicted RBP26.49■■□□□ 1.83
HMGN4-201ENST00000377575 APLP2Q06481 763 aa26.49■■□□□ 1.83
HMGN4-201ENST00000377575 ADGBQ8N7X0 1667 aa26.49■■□□□ 1.83
HMGN4-201ENST00000377575 CCDC141Q6ZP82 1450 aa26.46■■□□□ 1.83
HMGN4-201ENST00000377575 PLXNC1O60486 1568 aa26.46■■□□□ 1.83
HMGN4-201ENST00000377575 KANK4Q5T7N3 995 aaPredicted RBP26.45■■□□□ 1.82
HMGN4-201ENST00000377575 ARHGEF5Q12774 1597 aa26.44■■□□□ 1.82
HMGN4-201ENST00000377575 A2MP01023 1474 aa26.42■■□□□ 1.82
HMGN4-201ENST00000377575 RTEL1-TNFRSF6BF6WH68 1400 aa26.41■■□□□ 1.82
HMGN4-201ENST00000377575 MYOM3Q5VTT5 1437 aa26.41■■□□□ 1.82
HMGN4-201ENST00000377575 MIA2Q96PC5 1412 aa26.39■■□□□ 1.82
HMGN4-201ENST00000377575 RSPH4AQ5TD94 716 aa26.39■■□□□ 1.82
HMGN4-201ENST00000377575 PLPPR3Q6T4P5 718 aa26.37■■□□□ 1.81
HMGN4-201ENST00000377575 LMTK3Q96Q04 1460 aa26.36■■□□□ 1.81
HMGN4-201ENST00000377575 C3P01024 1663 aa26.35■■□□□ 1.81
HMGN4-201ENST00000377575 ESF1Q9H501 851 aaKnown RBP26.35■■□□□ 1.81
HMGN4-201ENST00000377575 PREX1Q8TCU6 1659 aa26.34■■□□□ 1.81
HMGN4-201ENST00000377575 CNTLNQ9NXG0 1405 aa26.34■■□□□ 1.81
HMGN4-201ENST00000377575 MROH2AA6NES4 1674 aa26.34■■□□□ 1.81
HMGN4-201ENST00000377575 MAST1Q9Y2H9 1570 aa26.31■■□□□ 1.8
HMGN4-201ENST00000377575 PTPN23Q9H3S7 1636 aa26.29■■□□□ 1.8
HMGN4-201ENST00000377575 CLTCQ00610 1675 aaKnown RBP26.28■■□□□ 1.8
HMGN4-201ENST00000377575 TSPY4P0CV99 314 aa26.27■■□□□ 1.8
HMGN4-201ENST00000377575 TSPY10P0CW01 314 aa26.27■■□□□ 1.8
HMGN4-201ENST00000377575 SETD1BQ9UPS6 1966 aaKnown RBP26.27■■□□□ 1.8
HMGN4-201ENST00000377575 CROCC2H7BZ55 1655 aa26.26■■□□□ 1.79
HMGN4-201ENST00000377575 DHX29Q7Z478 1369 aaKnown RBP26.26■■□□□ 1.79
HMGN4-201ENST00000377575 CEBPAP49715 358 aaPredicted RBP26.24■■□□□ 1.79
HMGN4-201ENST00000377575 FGD6Q6ZV73 1430 aa26.22■■□□□ 1.79
HMGN4-201ENST00000377575 UHRF1BP1Q6BDS2 1440 aa26.2■■□□□ 1.78
HMGN4-201ENST00000377575 FAM135AQ9P2D6 1515 aa26.19■■□□□ 1.78
HMGN4-201ENST00000377575 TCOF1Q13428 1488 aaKnown RBP26.19■■□□□ 1.78
HMGN4-201ENST00000377575 SHANK2Q9UPX8 1470 aa26.19■■□□□ 1.78
HMGN4-201ENST00000377575 DNMT1P26358 1616 aaKnown RBP26.19■■□□□ 1.78
HMGN4-201ENST00000377575 GGT6Q6P531 493 aa26.19■■□□□ 1.78
HMGN4-201ENST00000377575 PPP6R1Q9UPN7 881 aa26.18■■□□□ 1.78
HMGN4-201ENST00000377575 EIF2AK4Q9P2K8 1649 aaKnown RBP26.17■■□□□ 1.78
HMGN4-201ENST00000377575 NPATQ14207 1427 aa26.15■■□□□ 1.78
HMGN4-201ENST00000377575 ZMYM3Q14202 1370 aa26.15■■□□□ 1.78
HMGN4-201ENST00000377575 RNF17Q9BXT8 1623 aaKnown RBP26.14■■□□□ 1.77
HMGN4-201ENST00000377575 KDM5DQ9BY66 1539 aa26.14■■□□□ 1.77
HMGN4-201ENST00000377575 KIF3BO15066 747 aa26.13■■□□□ 1.77
HMGN4-201ENST00000377575 HSPA2P54652 639 aa26.13■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms