RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 LARP6Q9BRS8 491 aaKnown RBP7.88□□□□□ -1.15
HMGB1-201ENST00000326004 TMEM121BQ9BXQ6 578 aaPredicted RBP7.88□□□□□ -1.15
HMGB1-201ENST00000326004 E2F4Q16254 413 aa7.87□□□□□ -1.15
HMGB1-201ENST00000326004 DDX27Q96GQ7 796 aaKnown RBP7.87□□□□□ -1.15
HMGB1-201ENST00000326004 METRNQ9UJH8 293 aa7.87□□□□□ -1.15
HMGB1-201ENST00000326004 KCNV2Q8TDN2 545 aa7.86□□□□□ -1.15
HMGB1-201ENST00000326004 GPHNQ9NQX3 736 aaPredicted RBP7.86□□□□□ -1.15
HMGB1-201ENST00000326004 COLQQ9Y215 455 aaPredicted RBP7.86□□□□□ -1.15
HMGB1-201ENST00000326004 ARHGEF1Q92888 912 aaKnown RBP7.84□□□□□ -1.15
HMGB1-201ENST00000326004 POTEFA5A3E0 1075 aa7.83□□□□□ -1.16
HMGB1-201ENST00000326004 TMC2Q8TDI7 906 aa7.83□□□□□ -1.16
HMGB1-201ENST00000326004 PPP1R15BQ5SWA1 713 aa7.82□□□□□ -1.16
HMGB1-201ENST00000326004 FOXK1P85037 733 aa7.81□□□□□ -1.16
HMGB1-201ENST00000326004 CAMK2BQ13554 666 aa7.81□□□□□ -1.16
HMGB1-201ENST00000326004 ARIH1Q9Y4X5 557 aaPredicted RBP7.8□□□□□ -1.16
HMGB1-201ENST00000326004 KIF3CO14782 793 aa7.79□□□□□ -1.16
HMGB1-201ENST00000326004 C2orf72A6NCS6 295 aa7.78□□□□□ -1.16
HMGB1-201ENST00000326004 DSG2Q14126 1118 aa7.78□□□□□ -1.16
HMGB1-201ENST00000326004 C3orf67Q6ZVT6 689 aa7.78□□□□□ -1.16
HMGB1-201ENST00000326004 PLPP6Q8IY26 295 aa7.75□□□□□ -1.17
HMGB1-201ENST00000326004 TMEM92Q6UXU6 159 aa7.74□□□□□ -1.17
HMGB1-201ENST00000326004 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.73□□□□□ -1.17
HMGB1-201ENST00000326004 TULP1O00294 542 aaPredicted RBP7.72□□□□□ -1.17
HMGB1-201ENST00000326004 EMILIN3Q9NT22 766 aa7.71□□□□□ -1.18
HMGB1-201ENST00000326004 SPDYE16A6NNV3 312 aaPredicted RBP7.7□□□□□ -1.18
HMGB1-201ENST00000326004 TPRNQ4KMQ1 711 aa7.7□□□□□ -1.18
HMGB1-201ENST00000326004 TESPA1A2RU30 521 aaPredicted RBP7.69□□□□□ -1.18
HMGB1-201ENST00000326004 DPYSL4O14531 572 aa7.68□□□□□ -1.18
HMGB1-201ENST00000326004 SEMA3EO15041 775 aa7.68□□□□□ -1.18
HMGB1-201ENST00000326004 SMYD5Q6GMV2 418 aa7.68□□□□□ -1.18
HMGB1-201ENST00000326004 PDIA6Q15084 440 aa7.67□□□□□ -1.18
HMGB1-201ENST00000326004 MAP3K9P80192 1104 aa7.66□□□□□ -1.18
HMGB1-201ENST00000326004 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.66□□□□□ -1.18
HMGB1-201ENST00000326004 OXER1Q8TDS5 423 aa7.66□□□□□ -1.18
HMGB1-201ENST00000326004 SLC34A2O95436 690 aa7.65□□□□□ -1.18
HMGB1-201ENST00000326004 LMOD2Q6P5Q4 547 aa7.65□□□□□ -1.18
HMGB1-201ENST00000326004 MAMSTRQ6ZN01 415 aa7.65□□□□□ -1.18
HMGB1-201ENST00000326004 TBC1D12O60347 775 aa7.64□□□□□ -1.19
HMGB1-201ENST00000326004 PRKCSHP14314 528 aaPredicted RBP7.64□□□□□ -1.19
HMGB1-201ENST00000326004 SCUBE2Q9NQ36 999 aa7.64□□□□□ -1.19
HMGB1-201ENST00000326004 POTEB2H3BUK9 544 aa7.63□□□□□ -1.19
HMGB1-201ENST00000326004 PTCD2Q8WV60 388 aaKnown RBP7.63□□□□□ -1.19
HMGB1-201ENST00000326004 UPF1Q92900 1129 aaKnown RBP eCLIP7.63□□□□□ -1.19
HMGB1-201ENST00000326004 POTEJP0CG39 1038 aa7.62□□□□□ -1.19
HMGB1-201ENST00000326004 ZNF316A6NFI3 1004 aaPredicted RBP7.61□□□□□ -1.19
HMGB1-201ENST00000326004 MLLT3P42568 568 aaPredicted RBP7.59□□□□□ -1.19
HMGB1-201ENST00000326004 PTGER2P43116 358 aa7.59□□□□□ -1.19
HMGB1-201ENST00000326004 SLAIN1Q8ND83 568 aa7.59□□□□□ -1.19
HMGB1-201ENST00000326004 EVI5O60447 810 aa7.58□□□□□ -1.2
HMGB1-201ENST00000326004 DOK7Q18PE1 504 aa7.57□□□□□ -1.2
HMGB1-201ENST00000326004 PCDHGA4Q9Y5G9 962 aa7.56□□□□□ -1.2
HMGB1-201ENST00000326004 RIMBP2O15034 1052 aa7.55□□□□□ -1.2
HMGB1-201ENST00000326004 ANO8Q9HCE9 1232 aaPredicted RBP7.55□□□□□ -1.2
HMGB1-201ENST00000326004 GRXCR2A6NFK2 248 aa7.54□□□□□ -1.2
HMGB1-201ENST00000326004 ZSWIM6Q9HCJ5 1215 aa7.54□□□□□ -1.2
HMGB1-201ENST00000326004 SNPHO15079 494 aa7.53□□□□□ -1.2
HMGB1-201ENST00000326004 HOXB3P14651 431 aaPredicted RBP7.53□□□□□ -1.2
HMGB1-201ENST00000326004 RBM26Q5T8P6 1007 aaKnown RBP7.53□□□□□ -1.2
HMGB1-201ENST00000326004 LHX8Q68G74 356 aa7.53□□□□□ -1.2
HMGB1-201ENST00000326004 ZC3H15Q8WU90 426 aaKnown RBP7.53□□□□□ -1.2
HMGB1-201ENST00000326004 GPIHBP1Q8IV16 184 aa7.52□□□□□ -1.21
HMGB1-201ENST00000326004 DDX12PQ92771 950 aa7.51□□□□□ -1.21
HMGB1-201ENST00000326004 KDM4FA0A1W2PPD8 638 aa7.5□□□□□ -1.21
HMGB1-201ENST00000326004 PHF14O94880 888 aa7.5□□□□□ -1.21
HMGB1-201ENST00000326004 OSBPP22059 807 aa7.5□□□□□ -1.21
HMGB1-201ENST00000326004 ZNF710Q8N1W2 664 aa7.5□□□□□ -1.21
HMGB1-201ENST00000326004 EPAS1Q99814 870 aa7.5□□□□□ -1.21
HMGB1-201ENST00000326004 ZMYND10O75800 440 aa7.48□□□□□ -1.21
HMGB1-201ENST00000326004 OTUD5Q96G74 571 aa7.48□□□□□ -1.21
HMGB1-201ENST00000326004 ARSIQ5FYB1 569 aa7.47□□□□□ -1.21
HMGB1-201ENST00000326004 GPR153Q6NV75 609 aa7.47□□□□□ -1.21
HMGB1-201ENST00000326004 BARGINQ6ZT62 677 aa7.47□□□□□ -1.21
HMGB1-201ENST00000326004 JPH4Q96JJ6 628 aa7.47□□□□□ -1.21
HMGB1-201ENST00000326004 NUTM2FA1L443 756 aa7.46□□□□□ -1.22
HMGB1-201ENST00000326004 FBXW7Q969H0 707 aa7.46□□□□□ -1.22
HMGB1-201ENST00000326004 NUDT7P0C024 238 aa7.45□□□□□ -1.22
HMGB1-201ENST00000326004 EN1Q05925 392 aaPredicted RBP7.45□□□□□ -1.22
HMGB1-201ENST00000326004 TYW1BQ6NUM6 668 aa7.45□□□□□ -1.22
HMGB1-201ENST00000326004 PCDHGA10Q9Y5H3 936 aa7.45□□□□□ -1.22
HMGB1-201ENST00000326004 GPR37O15354 613 aa7.44□□□□□ -1.22
HMGB1-201ENST00000326004 FOSBP53539 338 aa7.44□□□□□ -1.22
HMGB1-201ENST00000326004 PSDA5PKW4 1024 aaPredicted RBP7.43□□□□□ -1.22
HMGB1-201ENST00000326004 FCHSD2O94868 740 aa7.43□□□□□ -1.22
HMGB1-201ENST00000326004 HOXB1P14653 301 aaPredicted RBP7.43□□□□□ -1.22
HMGB1-201ENST00000326004 KHSRPQ92945 711 aaKnown RBP eCLIP7.43□□□□□ -1.222e-8■□□□□ 8.9
HMGB1-201ENST00000326004 MAP3K7O43318 606 aa7.42□□□□□ -1.22
HMGB1-201ENST00000326004 PRIM1P49642 420 aaKnown RBP7.42□□□□□ -1.22
HMGB1-201ENST00000326004 HIC1Q14526 733 aa7.42□□□□□ -1.22
HMGB1-201ENST00000326004 ZDHHC16Q969W1 377 aa7.42□□□□□ -1.22
HMGB1-201ENST00000326004 SLC24A3Q9HC58 644 aa7.42□□□□□ -1.22
HMGB1-201ENST00000326004 ZNF454Q8N9F8 522 aa7.41□□□□□ -1.22
HMGB1-201ENST00000326004 KRI1Q8N9T8 703 aaKnown RBP7.41□□□□□ -1.22
HMGB1-201ENST00000326004 GNPATO15228 680 aa7.4□□□□□ -1.22
HMGB1-201ENST00000326004 PTGDRQ13258 359 aa7.4□□□□□ -1.22
HMGB1-201ENST00000326004 PPP4R3BQ5MIZ7 849 aa7.39□□□□□ -1.23
HMGB1-201ENST00000326004 CERKQ8TCT0 537 aa7.39□□□□□ -1.23
HMGB1-201ENST00000326004 RBM33Q96EV2 1170 aaKnown RBP7.39□□□□□ -1.23
HMGB1-201ENST00000326004 AK7Q96M32 723 aa7.39□□□□□ -1.23
HMGB1-201ENST00000326004 LHX6Q9UPM6 363 aa7.39□□□□□ -1.23
HMGB1-201ENST00000326004 MINK1Q8N4C8 1332 aaPredicted RBP7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms