RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 PDE4AP27815 886 aa10.53□□□□□ -0.72
CCDC54-201ENST00000261058 MICALL2Q8IY33 904 aa10.53□□□□□ -0.72
CCDC54-201ENST00000261058 NBR1Q14596 966 aa10.51□□□□□ -0.73
CCDC54-201ENST00000261058 SCUBE2Q9NQ36 999 aa10.51□□□□□ -0.73
CCDC54-201ENST00000261058 LARP6Q9BRS8 491 aaKnown RBP10.5□□□□□ -0.73
CCDC54-201ENST00000261058 COLQQ9Y215 455 aaPredicted RBP10.5□□□□□ -0.73
CCDC54-201ENST00000261058 POTEFA5A3E0 1075 aa10.49□□□□□ -0.73
CCDC54-201ENST00000261058 POTEJP0CG39 1038 aa10.49□□□□□ -0.73
CCDC54-201ENST00000261058 PLCG2P16885 1265 aa10.49□□□□□ -0.73
CCDC54-201ENST00000261058 E2F4Q16254 413 aa10.49□□□□□ -0.73
CCDC54-201ENST00000261058 GPHNQ9NQX3 736 aaPredicted RBP10.49□□□□□ -0.73
CCDC54-201ENST00000261058 BOLA1Q9Y3E2 137 aa10.48□□□□□ -0.73
CCDC54-201ENST00000261058 CAMK2BQ13554 666 aa10.47□□□□□ -0.73
CCDC54-201ENST00000261058 ARHGEF1Q92888 912 aaKnown RBP10.47□□□□□ -0.73
CCDC54-201ENST00000261058 DDX27Q96GQ7 796 aaKnown RBP10.47□□□□□ -0.73
CCDC54-201ENST00000261058 ARIH1Q9Y4X5 557 aaPredicted RBP10.46□□□□□ -0.74
CCDC54-201ENST00000261058 SEC24BO95487 1268 aa10.45□□□□□ -0.74
CCDC54-201ENST00000261058 L3MBTL3Q96JM7 780 aaPredicted RBP10.44□□□□□ -0.74
CCDC54-201ENST00000261058 KIF3CO14782 793 aa10.43□□□□□ -0.74
CCDC54-201ENST00000261058 POTEMA6NI47 508 aa10.41□□□□□ -0.74
CCDC54-201ENST00000261058 FOXK1P85037 733 aa10.41□□□□□ -0.74
CCDC54-201ENST00000261058 PPP1R15BQ5SWA1 713 aa10.41□□□□□ -0.74
CCDC54-201ENST00000261058 DSG2Q14126 1118 aa10.39□□□□□ -0.75
CCDC54-201ENST00000261058 POTEGQ6S5H5 508 aa10.38□□□□□ -0.75
CCDC54-201ENST00000261058 TMEM92Q6UXU6 159 aa10.38□□□□□ -0.75
CCDC54-201ENST00000261058 G3V3G9 751 aa10.37□□□□□ -0.75
CCDC54-201ENST00000261058 TMC2Q8TDI7 906 aa10.37□□□□□ -0.75
CCDC54-201ENST00000261058 C2orf72A6NCS6 295 aa10.36□□□□□ -0.75
CCDC54-201ENST00000261058 PRKCSHP14314 528 aaPredicted RBP10.33□□□□□ -0.76
CCDC54-201ENST00000261058 PCDH10Q9P2E7 1040 aa10.33□□□□□ -0.76
CCDC54-201ENST00000261058 EMILIN3Q9NT22 766 aa10.33□□□□□ -0.76
CCDC54-201ENST00000261058 TESPA1A2RU30 521 aaPredicted RBP10.32□□□□□ -0.76
CCDC54-201ENST00000261058 TPRNQ4KMQ1 711 aa10.32□□□□□ -0.76
CCDC54-201ENST00000261058 PLPP6Q8IY26 295 aa10.31□□□□□ -0.76
CCDC54-201ENST00000261058 SEMA3EO15041 775 aa10.29□□□□□ -0.76
CCDC54-201ENST00000261058 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.29□□□□□ -0.76
CCDC54-201ENST00000261058 FAM163AQ96GL9 167 aaPredicted RBP10.29□□□□□ -0.76
CCDC54-201ENST00000261058 LCE2DQ5TA82 110 aaPredicted RBP10.27□□□□□ -0.77
CCDC54-201ENST00000261058 PDIA6Q15084 440 aa10.25□□□□□ -0.77
CCDC54-201ENST00000261058 C3orf67Q6ZVT6 689 aa10.25□□□□□ -0.77
CCDC54-201ENST00000261058 DPYSL4O14531 572 aa10.24□□□□□ -0.77
CCDC54-201ENST00000261058 LMOD2Q6P5Q4 547 aa10.24□□□□□ -0.77
CCDC54-201ENST00000261058 SPDYE16A6NNV3 312 aaPredicted RBP10.23□□□□□ -0.77
CCDC54-201ENST00000261058 SLAIN1Q8ND83 568 aa10.23□□□□□ -0.77
CCDC54-201ENST00000261058 OXER1Q8TDS5 423 aa10.23□□□□□ -0.77
CCDC54-201ENST00000261058 SLC34A2O95436 690 aa10.2□□□□□ -0.78
CCDC54-201ENST00000261058 TULP1O00294 542 aaPredicted RBP10.19□□□□□ -0.78
CCDC54-201ENST00000261058 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.19□□□□□ -0.78
CCDC54-201ENST00000261058 PTCD2Q8WV60 388 aaKnown RBP10.18□□□□□ -0.78
CCDC54-201ENST00000261058 SMYD5Q6GMV2 418 aa10.17□□□□□ -0.78
CCDC54-201ENST00000261058 MLLT3P42568 568 aaPredicted RBP10.16□□□□□ -0.78
CCDC54-201ENST00000261058 MAP3K9P80192 1104 aa10.14□□□□□ -0.79
CCDC54-201ENST00000261058 PTGER2P43116 358 aa10.13□□□□□ -0.79
CCDC54-201ENST00000261058 UPF1Q92900 1129 aaKnown RBP eCLIP10.13□□□□□ -0.79
CCDC54-201ENST00000261058 SNPHO15079 494 aa10.12□□□□□ -0.79
CCDC54-201ENST00000261058 ZC3H15Q8WU90 426 aaKnown RBP10.11□□□□□ -0.79
CCDC54-201ENST00000261058 ST18O60284 1047 aa10.1□□□□□ -0.79
CCDC54-201ENST00000261058 ANO8Q9HCE9 1232 aaPredicted RBP10.09□□□□□ -0.79
CCDC54-201ENST00000261058 TBC1D12O60347 775 aa10.08□□□□□ -0.8
CCDC54-201ENST00000261058 KDM4FA0A1W2PPD8 638 aa10.07□□□□□ -0.8
CCDC54-201ENST00000261058 EVI5O60447 810 aa10.07□□□□□ -0.8
CCDC54-201ENST00000261058 RBM26Q5T8P6 1007 aaKnown RBP10.07□□□□□ -0.8
CCDC54-201ENST00000261058 ZMYND10O75800 440 aa10.06□□□□□ -0.8
CCDC54-201ENST00000261058 HOXB3P14651 431 aaPredicted RBP10.06□□□□□ -0.8
CCDC54-201ENST00000261058 CDAN1Q8IWY9 1227 aa10.06□□□□□ -0.8
CCDC54-201ENST00000261058 OSBPP22059 807 aa10.05□□□□□ -0.8
CCDC54-201ENST00000261058 PCDHGA4Q9Y5G9 962 aa10.05□□□□□ -0.8
CCDC54-201ENST00000261058 GPR37O15354 613 aa10.03□□□□□ -0.8
CCDC54-201ENST00000261058 GRXCR2A6NFK2 248 aa10.01□□□□□ -0.81
CCDC54-201ENST00000261058 GPIHBP1Q8IV16 184 aa10.01□□□□□ -0.81
CCDC54-201ENST00000261058 ZNF316A6NFI3 1004 aaPredicted RBP10□□□□□ -0.81
CCDC54-201ENST00000261058 BARGINQ6ZT62 677 aa10□□□□□ -0.81
CCDC54-201ENST00000261058 DDX12PQ92771 950 aa10□□□□□ -0.81
CCDC54-201ENST00000261058 ZSWIM6Q9HCJ5 1215 aa10□□□□□ -0.81
CCDC54-201ENST00000261058 PRIM1P49642 420 aaKnown RBP9.99□□□□□ -0.81
CCDC54-201ENST00000261058 DOK7Q18PE1 504 aa9.99□□□□□ -0.81
CCDC54-201ENST00000261058 PHF14O94880 888 aa9.98□□□□□ -0.81
CCDC54-201ENST00000261058 GPR153Q6NV75 609 aa9.98□□□□□ -0.81
CCDC54-201ENST00000261058 EPAS1Q99814 870 aa9.95□□□□□ -0.82
CCDC54-201ENST00000261058 PCDHGA10Q9Y5H3 936 aa9.95□□□□□ -0.82
CCDC54-201ENST00000261058 JPH4Q96JJ6 628 aa9.94□□□□□ -0.82
CCDC54-201ENST00000261058 RIMBP2O15034 1052 aa9.93□□□□□ -0.82
CCDC54-201ENST00000261058 EN1Q05925 392 aaPredicted RBP9.93□□□□□ -0.82
CCDC54-201ENST00000261058 SLC24A3Q9HC58 644 aa9.93□□□□□ -0.82
CCDC54-201ENST00000261058 ARSIQ5FYB1 569 aa9.92□□□□□ -0.82
CCDC54-201ENST00000261058 FOSBP53539 338 aa9.91□□□□□ -0.82
CCDC54-201ENST00000261058 KHSRPQ92945 711 aaKnown RBP eCLIP9.91□□□□□ -0.82
CCDC54-201ENST00000261058 NUDT7P0C024 238 aa9.9□□□□□ -0.82
CCDC54-201ENST00000261058 MARVELD3Q96A59 401 aa9.9□□□□□ -0.82
CCDC54-201ENST00000261058 NUTM2FA1L443 756 aa9.9□□□□□ -0.83
CCDC54-201ENST00000261058 EMP3P54852 163 aa9.9□□□□□ -0.83
CCDC54-201ENST00000261058 PTGDRQ13258 359 aa9.9□□□□□ -0.83
CCDC54-201ENST00000261058 TYW1BQ6NUM6 668 aa9.9□□□□□ -0.83
CCDC54-201ENST00000261058 FBXW7Q969H0 707 aa9.9□□□□□ -0.83
CCDC54-201ENST00000261058 HIC1Q14526 733 aa9.89□□□□□ -0.83
CCDC54-201ENST00000261058 FCHSD2O94868 740 aa9.88□□□□□ -0.83
CCDC54-201ENST00000261058 NPDC1Q9NQX5 325 aaPredicted RBP9.88□□□□□ -0.83
CCDC54-201ENST00000261058 GNPATO15228 680 aa9.87□□□□□ -0.83
CCDC54-201ENST00000261058 ZNF710Q8N1W2 664 aa9.87□□□□□ -0.83
CCDC54-201ENST00000261058 HOXB1P14653 301 aaPredicted RBP9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms