RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 TBC1D8BQ0IIM8 1120 aa14.27□□□□□ -0.12
LINC00540-203ENST00000631321 CNNM4Q6P4Q7 775 aa14.27□□□□□ -0.12
LINC00540-203ENST00000631321 EHBP1Q8NDI1 1231 aa14.27□□□□□ -0.12
LINC00540-203ENST00000631321 CERKQ8TCT0 537 aa14.27□□□□□ -0.12
LINC00540-203ENST00000631321 TBCKQ8TEA7 893 aa14.27□□□□□ -0.12
LINC00540-203ENST00000631321 CEP95Q96GE4 821 aa14.27□□□□□ -0.12
LINC00540-203ENST00000631321 GBP3Q9H0R5 595 aa14.27□□□□□ -0.12
LINC00540-203ENST00000631321 GUCA1BQ9UMX6 200 aa14.27□□□□□ -0.12
LINC00540-203ENST00000631321 EIF3CLB5ME19 914 aaKnown RBP14.27□□□□□ -0.13
LINC00540-203ENST00000631321 HOXA7P31268 230 aaPredicted RBP14.27□□□□□ -0.13
LINC00540-203ENST00000631321 CYLC1P35663 651 aaPredicted RBP14.27□□□□□ -0.13
LINC00540-203ENST00000631321 CRY2Q49AN0 593 aa14.27□□□□□ -0.13
LINC00540-203ENST00000631321 TRAPPC3LQ5T215 181 aa14.27□□□□□ -0.13
LINC00540-203ENST00000631321 CENPPQ6IPU0 288 aa14.27□□□□□ -0.13
LINC00540-203ENST00000631321 WDR93Q6P2C0 686 aa14.27□□□□□ -0.13
LINC00540-203ENST00000631321 GPR101Q96P66 508 aaPredicted RBP14.27□□□□□ -0.13
LINC00540-203ENST00000631321 EIF3CQ99613 913 aaKnown RBP14.27□□□□□ -0.13
LINC00540-203ENST00000631321 PES1O00541 588 aaKnown RBP14.26□□□□□ -0.13
LINC00540-203ENST00000631321 FXR2P51116 673 aaKnown RBP eCLIP14.26□□□□□ -0.13
LINC00540-203ENST00000631321 VSNL1P62760 191 aa14.26□□□□□ -0.13
LINC00540-203ENST00000631321 REXO1Q8N1G1 1221 aaKnown RBP14.26□□□□□ -0.13
LINC00540-203ENST00000631321 KIAA0895Q8NCT3 520 aa14.26□□□□□ -0.13
LINC00540-203ENST00000631321 PIGSQ96S52 555 aa14.26□□□□□ -0.13
LINC00540-203ENST00000631321 ABCB6Q9NP58 842 aa14.26□□□□□ -0.13
LINC00540-203ENST00000631321 AGPAT5Q9NUQ2 364 aa14.26□□□□□ -0.13
LINC00540-203ENST00000631321 ZNHIT6Q9NWK9 470 aaKnown RBP14.26□□□□□ -0.13
LINC00540-203ENST00000631321 STK17AQ9UEE5 414 aa14.26□□□□□ -0.13
LINC00540-203ENST00000631321 PVALEFA0A1B0GWK0 134 aa14.26□□□□□ -0.13
LINC00540-203ENST00000631321 H3BQF6 201 aa14.26□□□□□ -0.13
LINC00540-203ENST00000631321 FCER1AP12319 257 aa14.26□□□□□ -0.13
LINC00540-203ENST00000631321 TRIM21P19474 475 aaKnown RBP14.26□□□□□ -0.13
LINC00540-203ENST00000631321 HNRNPH3P31942 346 aaKnown RBP14.26□□□□□ -0.13
LINC00540-203ENST00000631321 TECP42680 631 aa14.26□□□□□ -0.13
LINC00540-203ENST00000631321 GRB10Q13322 594 aa14.26□□□□□ -0.13
LINC00540-203ENST00000631321 SLF2Q8IX21 1173 aa14.26□□□□□ -0.13
LINC00540-203ENST00000631321 NOA1Q8NC60 698 aaKnown RBP14.26□□□□□ -0.13
LINC00540-203ENST00000631321 CALML4Q96GE6 196 aa14.26□□□□□ -0.13
LINC00540-203ENST00000631321 PURBQ96QR8 312 aaKnown RBP14.26□□□□□ -0.13
LINC00540-203ENST00000631321 ZCCHC17Q9NP64 241 aaKnown RBP14.26□□□□□ -0.13
LINC00540-203ENST00000631321 BLOC1S4Q9NUP1 217 aa14.26□□□□□ -0.13
LINC00540-203ENST00000631321 ABCB11O95342 1321 aa14.26□□□□□ -0.13
LINC00540-203ENST00000631321 USP17L5A8MUK1 530 aa14.25□□□□□ -0.13
LINC00540-203ENST00000631321 UFL1O94874 794 aa14.25□□□□□ -0.13
LINC00540-203ENST00000631321 CCDC122Q5T0U0 273 aa14.25□□□□□ -0.13
LINC00540-203ENST00000631321 POTEDQ86YR6 584 aa14.25□□□□□ -0.13
LINC00540-203ENST00000631321 NOC4LQ9BVI4 516 aaKnown RBP14.25□□□□□ -0.13
LINC00540-203ENST00000631321 SEMA6BQ9H3T3 888 aa14.25□□□□□ -0.13
LINC00540-203ENST00000631321 NHEJ1Q9H9Q4 299 aaPredicted RBP14.25□□□□□ -0.13
LINC00540-203ENST00000631321 PSD3Q9NYI0 1048 aa14.25□□□□□ -0.13
LINC00540-203ENST00000631321 GGA1Q9UJY5 639 aa14.25□□□□□ -0.13
LINC00540-203ENST00000631321 KRT86O43790 486 aa14.25□□□□□ -0.13
LINC00540-203ENST00000631321 EDIL3O43854 480 aa14.25□□□□□ -0.13
LINC00540-203ENST00000631321 RHOXF2BP0C7M4 288 aa14.25□□□□□ -0.13
LINC00540-203ENST00000631321 PDHBP11177 359 aa14.25□□□□□ -0.13
LINC00540-203ENST00000631321 MTIF2P46199 727 aaKnown RBP14.25□□□□□ -0.13
LINC00540-203ENST00000631321 KLK7P49862 253 aa14.25□□□□□ -0.13
LINC00540-203ENST00000631321 NCAPH2Q6IBW4 605 aa14.25□□□□□ -0.13
LINC00540-203ENST00000631321 PRR5LQ6MZQ0 368 aa14.25□□□□□ -0.13
LINC00540-203ENST00000631321 UNC13DQ70J99 1090 aa14.25□□□□□ -0.13
LINC00540-203ENST00000631321 SV2BQ7L1I2 683 aa14.25□□□□□ -0.13
LINC00540-203ENST00000631321 TBC1D22AQ8WUA7 517 aa14.25□□□□□ -0.13
LINC00540-203ENST00000631321 JAKMIP2Q96AA8 810 aa14.25□□□□□ -0.13
LINC00540-203ENST00000631321 RHOXF2Q9BQY4 288 aa14.25□□□□□ -0.13
LINC00540-203ENST00000631321 CDK5RAP2Q96SN8 1893 aa14.24□□□□□ -0.13
LINC00540-203ENST00000631321 ANO9A1A5B4 782 aa14.24□□□□□ -0.13
LINC00540-203ENST00000631321 SNHG28P0DPA3 235 aa14.24□□□□□ -0.13
LINC00540-203ENST00000631321 FOXR2Q6PJQ5 311 aa14.24□□□□□ -0.13
LINC00540-203ENST00000631321 TXLNBQ8N3L3 684 aa14.24□□□□□ -0.13
LINC00540-203ENST00000631321 RPGRQ92834 1020 aaKnown RBP14.24□□□□□ -0.13
LINC00540-203ENST00000631321 RPGRIP1Q96KN7 1286 aa14.24□□□□□ -0.13
LINC00540-203ENST00000631321 PNMA5Q96PV4 448 aa14.24□□□□□ -0.13
LINC00540-203ENST00000631321 PODXL2Q9NZ53 605 aa14.24□□□□□ -0.13
LINC00540-203ENST00000631321 CALCOCO1Q9P1Z2 691 aa14.24□□□□□ -0.13
LINC00540-203ENST00000631321 BIN2Q9UBW5 565 aaPredicted RBP14.24□□□□□ -0.13
LINC00540-203ENST00000631321 SAR1BQ9Y6B6 198 aa14.24□□□□□ -0.13
LINC00540-203ENST00000631321 IGKV6D-41A0A0C4DH26 115 aa14.24□□□□□ -0.13
LINC00540-203ENST00000631321 MYMKA6NI61 221 aa14.24□□□□□ -0.13
LINC00540-203ENST00000631321 ATP1A1P05023 1023 aaKnown RBP14.24□□□□□ -0.13
LINC00540-203ENST00000631321 GPS2Q13227 327 aa14.24□□□□□ -0.13
LINC00540-203ENST00000631321 PDIA5Q14554 519 aa14.24□□□□□ -0.13
LINC00540-203ENST00000631321 CALCRLQ16602 461 aa14.24□□□□□ -0.13
LINC00540-203ENST00000631321 ASPRV1Q53RT3 343 aa14.24□□□□□ -0.13
LINC00540-203ENST00000631321 FKBP15Q5T1M5 1219 aa14.24□□□□□ -0.13
LINC00540-203ENST00000631321 KIAA1328Q86T90 577 aa14.24□□□□□ -0.13
LINC00540-203ENST00000631321 EXOC4Q96A65 974 aa14.24□□□□□ -0.13
LINC00540-203ENST00000631321 LACRTQ9GZZ8 138 aa14.24□□□□□ -0.13
LINC00540-203ENST00000631321 MTMR4Q9NYA4 1195 aa14.24□□□□□ -0.13
LINC00540-203ENST00000631321 MYH1P12882 1939 aa14.24□□□□□ -0.13
LINC00540-203ENST00000631321 TAF1LQ8IZX4 1826 aa14.23□□□□□ -0.13
LINC00540-203ENST00000631321 RCCD1A6NED2 376 aa14.23□□□□□ -0.13
LINC00540-203ENST00000631321 ERICH4A6NGS2 130 aa14.23□□□□□ -0.13
LINC00540-203ENST00000631321 EIF3JO75822 258 aaKnown RBP14.23□□□□□ -0.13
LINC00540-203ENST00000631321 ADRA2BP18089 450 aa14.23□□□□□ -0.13
LINC00540-203ENST00000631321 USP14P54578 494 aa14.23□□□□□ -0.13
LINC00540-203ENST00000631321 ST5P78524 1137 aa14.23□□□□□ -0.13
LINC00540-203ENST00000631321 GABPAQ06546 454 aa14.23□□□□□ -0.13
LINC00540-203ENST00000631321 MFSD14BQ5SR56 506 aa14.23□□□□□ -0.13
LINC00540-203ENST00000631321 PPP1R18Q6NYC8 613 aa14.23□□□□□ -0.13
LINC00540-203ENST00000631321 FNBP4Q8N3X1 1017 aaPredicted RBP14.23□□□□□ -0.13
LINC00540-203ENST00000631321 GUF1Q8N442 669 aaKnown RBP14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms