RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 NUP88Q99567 741 aaPredicted RBP24.85■■□□□ 1.57
PNKP-220ENST00000627232 MMTAG2Q9BU76 263 aaKnown RBP24.85■■□□□ 1.57
PNKP-220ENST00000627232 PGAP2Q9UHJ9 254 aa24.85■■□□□ 1.57
PNKP-220ENST00000627232 RWDD2AQ9UIY3 292 aa24.85■■□□□ 1.57
PNKP-220ENST00000627232 SKILP12757 684 aa24.84■■□□□ 1.57
PNKP-220ENST00000627232 RPS12P25398 132 aaKnown RBP24.84■■□□□ 1.57
PNKP-220ENST00000627232 CDKAL1Q5VV42 579 aa24.84■■□□□ 1.57
PNKP-220ENST00000627232 MOXD1Q6UVY6 613 aa24.84■■□□□ 1.57
PNKP-220ENST00000627232 SAMSN1Q9NSI8 373 aaKnown RBP24.84■■□□□ 1.57
PNKP-220ENST00000627232 STK17AQ9UEE5 414 aa24.84■■□□□ 1.57
PNKP-220ENST00000627232 LRWD1Q9UFC0 647 aa24.84■■□□□ 1.57
PNKP-220ENST00000627232 AMPD3Q01432 767 aa24.83■■□□□ 1.57
PNKP-220ENST00000627232 DNTTIP2Q5QJE6 756 aaKnown RBP24.83■■□□□ 1.57
PNKP-220ENST00000627232 KLHL10Q6JEL2 608 aa24.83■■□□□ 1.57
PNKP-220ENST00000627232 CCDC47Q96A33 483 aaKnown RBP24.83■■□□□ 1.57
PNKP-220ENST00000627232 C7orf25Q9BPX7 421 aa24.83■■□□□ 1.57
PNKP-220ENST00000627232 ANO3Q9BYT9 981 aa24.83■■□□□ 1.57
PNKP-220ENST00000627232 MYOZ2Q9NPC6 264 aa24.83■■□□□ 1.57
PNKP-220ENST00000627232 DDX25Q9UHL0 483 aaKnown RBP24.83■■□□□ 1.57
PNKP-220ENST00000627232 LTBP3Q9NS15 1303 aa24.83■■□□□ 1.57
PNKP-220ENST00000627232 CYP3A7-CYP3A51PA0A087WV96 503 aa24.82■■□□□ 1.56
PNKP-220ENST00000627232 WNT10BO00744 389 aa24.82■■□□□ 1.56
PNKP-220ENST00000627232 NRDCO43847 1150 aa24.82■■□□□ 1.56
PNKP-220ENST00000627232 KLRC4O43908 158 aa24.82■■□□□ 1.56
PNKP-220ENST00000627232 RHOBTB3O94955 611 aa24.82■■□□□ 1.56
PNKP-220ENST00000627232 SFPQP23246 707 aaKnown RBP eCLIP24.82■■□□□ 1.56
PNKP-220ENST00000627232 CYP3A7P24462 503 aa24.82■■□□□ 1.56
PNKP-220ENST00000627232 ZNF280AP59817 542 aaPredicted RBP24.82■■□□□ 1.56
PNKP-220ENST00000627232 IKQ13123 557 aaPredicted RBP24.82■■□□□ 1.56
PNKP-220ENST00000627232 PAK1Q13153 545 aa24.82■■□□□ 1.56
PNKP-220ENST00000627232 ARMCX5Q6P1M9 558 aa24.82■■□□□ 1.56
PNKP-220ENST00000627232 SMYD4Q8IYR2 804 aaPredicted RBP24.82■■□□□ 1.56
PNKP-220ENST00000627232 SH2D4AQ9H788 454 aa24.82■■□□□ 1.56
PNKP-220ENST00000627232 KCND1Q9NSA2 647 aa24.82■■□□□ 1.56
PNKP-220ENST00000627232 CTNND2Q9UQB3 1225 aa24.82■■□□□ 1.56
PNKP-220ENST00000627232 CD2APQ9Y5K6 639 aa24.82■■□□□ 1.56
PNKP-220ENST00000627232 SLC26A4O43511 780 aa24.81■■□□□ 1.56
PNKP-220ENST00000627232 FOSP01100 380 aaPredicted RBP24.81■■□□□ 1.56
PNKP-220ENST00000627232 KCNJ6P48051 423 aa24.81■■□□□ 1.56
PNKP-220ENST00000627232 LRRC15Q8TF66 581 aa24.81■■□□□ 1.56
PNKP-220ENST00000627232 MBOAT7Q96N66 472 aa24.81■■□□□ 1.56
PNKP-220ENST00000627232 CTAGE1Q96RT6 745 aa24.81■■□□□ 1.56
PNKP-220ENST00000627232 TMEM39BQ9GZU3 492 aa24.81■■□□□ 1.56
PNKP-220ENST00000627232 INTS13Q9NVM9 706 aa24.81■■□□□ 1.56
PNKP-220ENST00000627232 R3HCC1Q9Y3T6 440 aaKnown RBP24.81■■□□□ 1.56
PNKP-220ENST00000627232 ATAD5Q96QE3 1844 aa24.81■■□□□ 1.56
PNKP-220ENST00000627232 A0A1B0GTH6 734 aa24.81■■□□□ 1.56
PNKP-220ENST00000627232 USP17L15C9J2P7 530 aa24.81■■□□□ 1.56
PNKP-220ENST00000627232 USP17L13C9JLJ4 530 aa24.81■■□□□ 1.56
PNKP-220ENST00000627232 USP17L11C9JVI0 530 aa24.81■■□□□ 1.56
PNKP-220ENST00000627232 USP17L18D6R9N7 530 aa24.81■■□□□ 1.56
PNKP-220ENST00000627232 USP17L22D6RA61 530 aa24.81■■□□□ 1.56
PNKP-220ENST00000627232 USP17L17D6RBQ6 530 aa24.81■■□□□ 1.56
PNKP-220ENST00000627232 USP17L19D6RCP7 530 aa24.81■■□□□ 1.56
PNKP-220ENST00000627232 USP17L20D6RJB6 530 aa24.81■■□□□ 1.56
PNKP-220ENST00000627232 NFKBIEO00221 500 aa24.81■■□□□ 1.56
PNKP-220ENST00000627232 MEIS2O14770 477 aa24.81■■□□□ 1.56
PNKP-220ENST00000627232 PLA2G6O60733 806 aa24.81■■□□□ 1.56
PNKP-220ENST00000627232 CAP2P40123 477 aa24.81■■□□□ 1.56
PNKP-220ENST00000627232 STX17P56962 302 aa24.81■■□□□ 1.56
PNKP-220ENST00000627232 USP17L24Q0WX57 530 aa24.81■■□□□ 1.56
PNKP-220ENST00000627232 KMT5BQ4FZB7 885 aa24.81■■□□□ 1.56
PNKP-220ENST00000627232 USP17L6PQ6QN14 398 aa24.81■■□□□ 1.56
PNKP-220ENST00000627232 PLIN2Q99541 437 aa24.81■■□□□ 1.56
PNKP-220ENST00000627232 PRR12Q9ULL5 1215 aa24.81■■□□□ 1.56
PNKP-220ENST00000627232 ECE1P42892 770 aa24.8■■□□□ 1.56
PNKP-220ENST00000627232 STAT2P52630 851 aa24.8■■□□□ 1.56
PNKP-220ENST00000627232 GRB10Q13322 594 aa24.8■■□□□ 1.56
PNKP-220ENST00000627232 NR1I3Q14994 352 aa24.8■■□□□ 1.56
PNKP-220ENST00000627232 NBPF9Q3BBW0 867 aa24.79■■□□□ 1.56
PNKP-220ENST00000627232 KRT79Q5XKE5 535 aa24.79■■□□□ 1.56
PNKP-220ENST00000627232 ADSSL1Q8N142 457 aa24.79■■□□□ 1.56
PNKP-220ENST00000627232 GIMAP8Q8ND71 665 aaPredicted RBP24.79■■□□□ 1.56
PNKP-220ENST00000627232 ACER1Q8TDN7 264 aa24.79■■□□□ 1.56
PNKP-220ENST00000627232 NELFBQ8WX92 580 aa24.79■■□□□ 1.56
PNKP-220ENST00000627232 CRYGNQ8WXF5 182 aa24.79■■□□□ 1.56
PNKP-220ENST00000627232 HAS1Q92839 578 aa24.79■■□□□ 1.56
PNKP-220ENST00000627232 TRIM9Q9C026 710 aa24.79■■□□□ 1.56
PNKP-220ENST00000627232 VCPKMTQ9H867 229 aa24.79■■□□□ 1.56
PNKP-220ENST00000627232 HOXA7P31268 230 aaPredicted RBP24.78■■□□□ 1.56
PNKP-220ENST00000627232 PPP1R2P41236 205 aa24.78■■□□□ 1.56
PNKP-220ENST00000627232 PRCPP42785 496 aa24.78■■□□□ 1.56
PNKP-220ENST00000627232 SPAG1Q07617 926 aa24.78■■□□□ 1.56
PNKP-220ENST00000627232 TBX2Q13207 712 aaPredicted RBP24.78■■□□□ 1.56
PNKP-220ENST00000627232 STIM1Q13586 685 aa24.78■■□□□ 1.56
PNKP-220ENST00000627232 TNFAIP1Q13829 316 aa24.78■■□□□ 1.56
PNKP-220ENST00000627232 TPD52L1Q16890 204 aaPredicted RBP24.78■■□□□ 1.56
PNKP-220ENST00000627232 SV2BQ7L1I2 683 aa24.78■■□□□ 1.56
PNKP-220ENST00000627232 APTXQ7Z2E3 356 aaKnown RBP24.78■■□□□ 1.56
PNKP-220ENST00000627232 CCDC112Q8NEF3 446 aa24.78■■□□□ 1.56
PNKP-220ENST00000627232 CHURC1Q8WUH1 139 aa24.78■■□□□ 1.56
PNKP-220ENST00000627232 CDK5RAP3Q96JB5 506 aa24.78■■□□□ 1.56
PNKP-220ENST00000627232 PNMA5Q96PV4 448 aa24.78■■□□□ 1.56
PNKP-220ENST00000627232 TPM2P07951 284 aa24.77■■□□□ 1.56
PNKP-220ENST00000627232 ASNSP08243 561 aa24.77■■□□□ 1.56
PNKP-220ENST00000627232 TMEM119Q4V9L6 283 aa24.77■■□□□ 1.56
PNKP-220ENST00000627232 HSP90AA4PQ58FG1 418 aa24.77■■□□□ 1.56
PNKP-220ENST00000627232 PRIMPOLQ96LW4 560 aa24.77■■□□□ 1.56
PNKP-220ENST00000627232 LRRC27Q9C0I9 530 aa24.77■■□□□ 1.56
PNKP-220ENST00000627232 GDAQ9Y2T3 454 aa24.77■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms