RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 TNFAIP2Q03169 654 aa12.3□□□□□ -0.44
LIG1-213ENST00000596672 CXCL17Q6UXB2 119 aa12.3□□□□□ -0.44
LIG1-213ENST00000596672 SLC43A3Q8NBI5 491 aa12.3□□□□□ -0.44
LIG1-213ENST00000596672 COPS5Q92905 334 aa12.3□□□□□ -0.44
LIG1-213ENST00000596672 SCN10AQ9Y5Y9 1956 aa12.3□□□□□ -0.44
LIG1-213ENST00000596672 WDR19Q8NEZ3 1342 aa12.3□□□□□ -0.44
LIG1-213ENST00000596672 TET1Q8NFU7 2136 aa12.29□□□□□ -0.44
LIG1-213ENST00000596672 MOXD2PA6NHM9 499 aa12.29□□□□□ -0.44
LIG1-213ENST00000596672 ASB14A6NK59 587 aa12.29□□□□□ -0.44
LIG1-213ENST00000596672 DYNC1LI2O43237 492 aaPredicted RBP12.29□□□□□ -0.44
LIG1-213ENST00000596672 ARIH2O95376 493 aa12.29□□□□□ -0.44
LIG1-213ENST00000596672 CLTBP09497 229 aa12.29□□□□□ -0.44
LIG1-213ENST00000596672 CALML3P27482 149 aa12.29□□□□□ -0.44
LIG1-213ENST00000596672 PSMC6P62333 389 aa12.29□□□□□ -0.44
LIG1-213ENST00000596672 CDC37Q16543 378 aaPredicted RBP12.29□□□□□ -0.44
LIG1-213ENST00000596672 IMMTQ16891 758 aaKnown RBP12.29□□□□□ -0.44
LIG1-213ENST00000596672 QRICH1Q2TAL8 776 aa12.29□□□□□ -0.44
LIG1-213ENST00000596672 USH1GQ495M9 461 aa12.29□□□□□ -0.44
LIG1-213ENST00000596672 GNASQ5JWF2 1037 aa12.29□□□□□ -0.44
LIG1-213ENST00000596672 CHST3Q7LGC8 479 aa12.29□□□□□ -0.44
LIG1-213ENST00000596672 STARD7Q9NQZ5 370 aa12.29□□□□□ -0.44
LIG1-213ENST00000596672 MTMR10Q9NXD2 777 aa12.29□□□□□ -0.44
LIG1-213ENST00000596672 MAD2L2Q9UI95 211 aa12.29□□□□□ -0.44
LIG1-213ENST00000596672 UMODL1Q5DID0 1318 aa12.29□□□□□ -0.44
LIG1-213ENST00000596672 KIAA1217Q5T5P2 1943 aa12.29□□□□□ -0.44
LIG1-213ENST00000596672 VCANP13611 3396 aa12.29□□□□□ -0.44
LIG1-213ENST00000596672 PTPDC1A2A3K4 754 aa12.28□□□□□ -0.44
LIG1-213ENST00000596672 CYTH3O43739 400 aa12.28□□□□□ -0.44
LIG1-213ENST00000596672 CD4P01730 458 aa12.28□□□□□ -0.44
LIG1-213ENST00000596672 FAM109BQ6ICB4 259 aaPredicted RBP12.28□□□□□ -0.44
LIG1-213ENST00000596672 RNF207Q6ZRF8 634 aa12.28□□□□□ -0.44
LIG1-213ENST00000596672 TLK2Q86UE8 772 aa12.28□□□□□ -0.44
LIG1-213ENST00000596672 FAM126BQ8IXS8 530 aa12.28□□□□□ -0.44
LIG1-213ENST00000596672 DEFB123Q8N688 67 aa12.28□□□□□ -0.44
LIG1-213ENST00000596672 SYTL5Q8TDW5 730 aaPredicted RBP12.28□□□□□ -0.44
LIG1-213ENST00000596672 MAP4K1Q92918 833 aa12.28□□□□□ -0.44
LIG1-213ENST00000596672 MTMR8Q96EF0 704 aa12.28□□□□□ -0.44
LIG1-213ENST00000596672 TOX2Q96NM4 488 aa12.28□□□□□ -0.44
LIG1-213ENST00000596672 TAAR1Q96RJ0 339 aa12.28□□□□□ -0.44
LIG1-213ENST00000596672 VAT1LQ9HCJ6 419 aa12.28□□□□□ -0.44
LIG1-213ENST00000596672 ELP1O95163 1332 aa12.28□□□□□ -0.44
LIG1-213ENST00000596672 MYH7BA7E2Y1 1941 aa12.27□□□□□ -0.44
LIG1-213ENST00000596672 SCN5AQ14524 2016 aa12.27□□□□□ -0.44
LIG1-213ENST00000596672 PALM3A6NDB9 673 aaPredicted RBP12.27□□□□□ -0.45
LIG1-213ENST00000596672 E7EWF7 191 aa12.27□□□□□ -0.45
LIG1-213ENST00000596672 ARVCFO00192 962 aa12.27□□□□□ -0.45
LIG1-213ENST00000596672 FSCN1Q16658 493 aaKnown RBP12.27□□□□□ -0.45
LIG1-213ENST00000596672 DUSP28Q4G0W2 176 aa12.27□□□□□ -0.45
LIG1-213ENST00000596672 GPATCH4Q5T3I0 446 aaKnown RBP12.27□□□□□ -0.45
LIG1-213ENST00000596672 IQSEC1Q6DN90 963 aa12.27□□□□□ -0.45
LIG1-213ENST00000596672 KIAA1211Q6ZU35 1233 aa12.27□□□□□ -0.45
LIG1-213ENST00000596672 MB21D2Q8IYB1 491 aaPredicted RBP12.27□□□□□ -0.45
LIG1-213ENST00000596672 GUCD1Q96NT3 240 aa12.27□□□□□ -0.45
LIG1-213ENST00000596672 LBHD1Q9BQE6 289 aaPredicted RBP12.27□□□□□ -0.45
LIG1-213ENST00000596672 LSG1Q9H089 658 aaKnown RBP12.27□□□□□ -0.45
LIG1-213ENST00000596672 KAT14Q9H8E8 782 aa12.27□□□□□ -0.45
LIG1-213ENST00000596672 VTA1Q9NP79 307 aa12.27□□□□□ -0.45
LIG1-213ENST00000596672 TMEM39AQ9NV64 488 aa12.27□□□□□ -0.45
LIG1-213ENST00000596672 CTNNA3Q9UI47 895 aa12.27□□□□□ -0.45
LIG1-213ENST00000596672 RAD50Q92878 1312 aa12.27□□□□□ -0.45
LIG1-213ENST00000596672 TRIP12Q14669 1992 aaPredicted RBP12.27□□□□□ -0.45
LIG1-213ENST00000596672 TROAPQ12815 778 aa12.26□□□□□ -0.45
LIG1-213ENST00000596672 GPR153Q6NV75 609 aa12.26□□□□□ -0.45
LIG1-213ENST00000596672 CCDC62Q6P9F0 684 aa12.26□□□□□ -0.45
LIG1-213ENST00000596672 NOL8Q76FK4 1167 aaKnown RBP12.26□□□□□ -0.45
LIG1-213ENST00000596672 IQCA1Q86XH1 822 aa12.26□□□□□ -0.45
LIG1-213ENST00000596672 RGS22Q8NE09 1264 aa12.26□□□□□ -0.45
LIG1-213ENST00000596672 IGDCC4Q8TDY8 1250 aa12.26□□□□□ -0.45
LIG1-213ENST00000596672 WDR11Q9BZH6 1224 aa12.26□□□□□ -0.45
LIG1-213ENST00000596672 KRT23Q9C075 422 aa12.26□□□□□ -0.45
LIG1-213ENST00000596672 TRPV6Q9H1D0 765 aa12.26□□□□□ -0.45
LIG1-213ENST00000596672 TTYH1Q9H313 450 aaPredicted RBP12.26□□□□□ -0.45
LIG1-213ENST00000596672 RBM8AQ9Y5S9 174 aaKnown RBP12.26□□□□□ -0.45
LIG1-213ENST00000596672 RGS20O76081 388 aa12.25□□□□□ -0.45
LIG1-213ENST00000596672 TIMP1P01033 207 aa12.25□□□□□ -0.45
LIG1-213ENST00000596672 PARP1P09874 1014 aaKnown RBP12.25□□□□□ -0.45
LIG1-213ENST00000596672 CYP2C18P33260 490 aa12.25□□□□□ -0.45
LIG1-213ENST00000596672 GRM4Q14833 912 aa12.25□□□□□ -0.45
LIG1-213ENST00000596672 ASPRV1Q53RT3 343 aa12.25□□□□□ -0.45
LIG1-213ENST00000596672 PCSK9Q8NBP7 692 aaKnown RBP12.25□□□□□ -0.45
LIG1-213ENST00000596672 NUP133Q8WUM0 1156 aa12.25□□□□□ -0.45
LIG1-213ENST00000596672 GLT1D1Q96MS3 346 aa12.25□□□□□ -0.45
LIG1-213ENST00000596672 FAM161BQ96MY7 647 aa12.25□□□□□ -0.45
LIG1-213ENST00000596672 CTAGE1Q96RT6 745 aa12.25□□□□□ -0.45
LIG1-213ENST00000596672 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.25□□□□□ -0.456e-7■■□□□ 12.8
LIG1-213ENST00000596672 PRKAG2Q9UGJ0 569 aa12.25□□□□□ -0.45
LIG1-213ENST00000596672 A0A0U1RQG5 324 aaPredicted RBP12.24□□□□□ -0.45
LIG1-213ENST00000596672 KLRF2D3W0D1 207 aa12.24□□□□□ -0.45
LIG1-213ENST00000596672 REV3LO60673 3130 aa12.24□□□□□ -0.45
LIG1-213ENST00000596672 CSF2RAP15509 400 aa12.24□□□□□ -0.45
LIG1-213ENST00000596672 RAG1P15918 1043 aa12.24□□□□□ -0.45
LIG1-213ENST00000596672 PURAQ00577 322 aaKnown RBP12.24□□□□□ -0.45
LIG1-213ENST00000596672 GHRHRQ02643 423 aa12.24□□□□□ -0.45
LIG1-213ENST00000596672 ITGA7Q13683 1181 aa12.24□□□□□ -0.45
LIG1-213ENST00000596672 CCDC178Q5BJE1 867 aa12.24□□□□□ -0.45
LIG1-213ENST00000596672 IFIT1BQ5T764 474 aaKnown RBP12.24□□□□□ -0.45
LIG1-213ENST00000596672 RASIP1Q5U651 963 aa12.24□□□□□ -0.45
LIG1-213ENST00000596672 IL31RAQ8NI17 732 aa12.24□□□□□ -0.45
LIG1-213ENST00000596672 GBF1Q92538 1859 aa12.24□□□□□ -0.45
LIG1-213ENST00000596672 ZFP91Q96JP5 570 aaPredicted RBP12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms