RNA–Protein interactions for RNA: ENST00000592138.5

TPM4-215, Transcript of tropomyosin 4, human

TSL 2

Gene TPM4, Length 635 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM4-215	ENST00000592138	TPCN1	Q9ULQ1	816 aa		11.24	□□□□□ -0.61
TPM4-215	ENST00000592138	SYNGAP1	Q96PV0	1343 aa		11.24	□□□□□ -0.61
TPM4-215	ENST00000592138	KIAA0100	Q14667	2235 aa	Known RBP	11.24	□□□□□ -0.61
TPM4-215	ENST00000592138	LAMA3	Q16787	3333 aa		11.24	□□□□□ -0.61
TPM4-215	ENST00000592138	RBBP6	Q7Z6E9	1792 aa	Known RBP	11.23	□□□□□ -0.61
TPM4-215	ENST00000592138	COL6A3	P12111	3177 aa		11.23	□□□□□ -0.61
TPM4-215	ENST00000592138	POTEB2	H3BUK9	544 aa		11.23	□□□□□ -0.61
TPM4-215	ENST00000592138	OPLAH	O14841	1288 aa		11.23	□□□□□ -0.61
TPM4-215	ENST00000592138	PRPF3	O43395	683 aa	Known RBP	11.23	□□□□□ -0.61
TPM4-215	ENST00000592138	ST18	O60284	1047 aa		11.23	□□□□□ -0.61
TPM4-215	ENST00000592138	CDKL5	O76039	1030 aa		11.23	□□□□□ -0.61
TPM4-215	ENST00000592138	INHA	P05111	366 aa		11.23	□□□□□ -0.61
TPM4-215	ENST00000592138	PGK2	P07205	417 aa		11.23	□□□□□ -0.61
TPM4-215	ENST00000592138	HSD17B4	P51659	736 aa		11.23	□□□□□ -0.61
TPM4-215	ENST00000592138	RPS6	P62753	249 aa	Known RBP	11.23	□□□□□ -0.61
TPM4-215	ENST00000592138	SCRN1	Q12765	414 aa		11.23	□□□□□ -0.61
TPM4-215	ENST00000592138	PFKFB3	Q16875	520 aa	Predicted RBP	11.23	□□□□□ -0.61
TPM4-215	ENST00000592138	MFSD14C	Q5VZR4	134 aa		11.23	□□□□□ -0.61
TPM4-215	ENST00000592138	NSMF	Q6X4W1	530 aa		11.23	□□□□□ -0.61
TPM4-215	ENST00000592138	RNF207	Q6ZRF8	634 aa		11.23	□□□□□ -0.61
TPM4-215	ENST00000592138	FAM177A1	Q8N128	213 aa	Predicted RBP	11.23	□□□□□ -0.61
TPM4-215	ENST00000592138	SLK	Q9H2G2	1235 aa	Predicted RBP	11.23	□□□□□ -0.61
TPM4-215	ENST00000592138	ADD3	Q9UEY8	706 aa	Known RBP	11.23	□□□□□ -0.61
TPM4-215	ENST00000592138	LIMCH1	Q9UPQ0	1083 aa		11.23	□□□□□ -0.61
TPM4-215	ENST00000592138	PTPDC1	A2A3K4	754 aa		11.22	□□□□□ -0.61
TPM4-215	ENST00000592138	ASB14	A6NK59	587 aa		11.22	□□□□□ -0.61
TPM4-215	ENST00000592138	PIK3CD	O00329	1044 aa		11.22	□□□□□ -0.61
TPM4-215	ENST00000592138	CPLX1	O14810	134 aa		11.22	□□□□□ -0.61
TPM4-215	ENST00000592138	ELN	P15502	786 aa		11.22	□□□□□ -0.61
TPM4-215	ENST00000592138	TAL1	P17542	331 aa	Predicted RBP	11.22	□□□□□ -0.61
TPM4-215	ENST00000592138	MCM2	P49736	904 aa		11.22	□□□□□ -0.61
TPM4-215	ENST00000592138	CCT2	P78371	535 aa	Known RBP	11.22	□□□□□ -0.61
TPM4-215	ENST00000592138	BAAT	Q14032	418 aa	Predicted RBP	11.22	□□□□□ -0.61
TPM4-215	ENST00000592138	CCL14	Q16627	93 aa		11.22	□□□□□ -0.61
TPM4-215	ENST00000592138	ME3	Q16798	604 aa		11.22	□□□□□ -0.61
TPM4-215	ENST00000592138	SLC30A10	Q6XR72	485 aa		11.22	□□□□□ -0.61
TPM4-215	ENST00000592138	TRIM22	Q8IYM9	498 aa		11.22	□□□□□ -0.61
TPM4-215	ENST00000592138	RPTOR	Q8N122	1335 aa		11.22	□□□□□ -0.61
TPM4-215	ENST00000592138	CCDC82	Q8N4S0	544 aa		11.22	□□□□□ -0.61
TPM4-215	ENST00000592138	MORC4	Q8TE76	937 aa		11.22	□□□□□ -0.61
TPM4-215	ENST00000592138	SH3TC2	Q8TF17	1288 aa		11.22	□□□□□ -0.61
TPM4-215	ENST00000592138	GTF3C6	Q969F1	213 aa		11.22	□□□□□ -0.61
TPM4-215	ENST00000592138	ZSCAN31	Q96LW9	406 aa	Predicted RBP	11.22	□□□□□ -0.61
TPM4-215	ENST00000592138	FGD4	Q96M96	766 aa		11.22	□□□□□ -0.61
TPM4-215	ENST00000592138	TINF2	Q9BSI4	451 aa		11.22	□□□□□ -0.61
TPM4-215	ENST00000592138	GLT8D2	Q9H1C3	349 aa		11.22	□□□□□ -0.61
TPM4-215	ENST00000592138	NCOA5	Q9HCD5	579 aa	Known RBP	11.22	□□□□□ -0.61
TPM4-215	ENST00000592138	SH2B1	Q9NRF2	756 aa	Predicted RBP	11.22	□□□□□ -0.61
TPM4-215	ENST00000592138	BARHL2	Q9NY43	387 aa		11.22	□□□□□ -0.61
TPM4-215	ENST00000592138	FLRT1	Q9NZU1	646 aa		11.22	□□□□□ -0.61
TPM4-215	ENST00000592138		V9GY48	417 aa	Predicted RBP	11.22	□□□□□ -0.61
TPM4-215	ENST00000592138	STK36	Q9NRP7	1315 aa		11.21	□□□□□ -0.61
TPM4-215	ENST00000592138	SOWAHB	A6NEL2	793 aa		11.21	□□□□□ -0.61
TPM4-215	ENST00000592138		B4DLN1	442 aa		11.21	□□□□□ -0.61
TPM4-215	ENST00000592138	SCG2	P13521	617 aa		11.21	□□□□□ -0.61
TPM4-215	ENST00000592138	PRKAR2A	P13861	404 aa	Known RBP	11.21	□□□□□ -0.61
TPM4-215	ENST00000592138	EDNRB	P24530	442 aa		11.21	□□□□□ -0.61
TPM4-215	ENST00000592138	MRPL12	P52815	198 aa	Known RBP	11.21	□□□□□ -0.61
TPM4-215	ENST00000592138	AKAP17A	Q02040	695 aa	Known RBP	11.21	□□□□□ -0.61
TPM4-215	ENST00000592138	PKN1	Q16512	942 aa		11.21	□□□□□ -0.61
TPM4-215	ENST00000592138	WWC2	Q6AWC2	1192 aa		11.21	□□□□□ -0.61
TPM4-215	ENST00000592138	CCDC12	Q8WUD4	166 aa	Predicted RBP	11.21	□□□□□ -0.61
TPM4-215	ENST00000592138	MPHOSPH6	Q99547	160 aa	Known RBP	11.21	□□□□□ -0.61
TPM4-215	ENST00000592138	PAK6	Q9NQU5	681 aa	Predicted RBP	11.21	□□□□□ -0.61
TPM4-215	ENST00000592138	ASTN1	O14525	1302 aa		11.2	□□□□□ -0.62
TPM4-215	ENST00000592138	FRMPD4	Q14CM0	1322 aa		11.2	□□□□□ -0.62
TPM4-215	ENST00000592138	ESYT2	A0FGR8	921 aa		11.2	□□□□□ -0.62
TPM4-215	ENST00000592138	GCOM1	H8Y6P7	765 aa	Predicted RBP	11.2	□□□□□ -0.62
TPM4-215	ENST00000592138	STXBP3	O00186	592 aa		11.2	□□□□□ -0.62
TPM4-215	ENST00000592138	DEXI	O95424	95 aa		11.2	□□□□□ -0.62
TPM4-215	ENST00000592138	CFB	P00751	764 aa		11.2	□□□□□ -0.62
TPM4-215	ENST00000592138	POLR2M	P0CAP2	368 aa		11.2	□□□□□ -0.62
TPM4-215	ENST00000592138	CYBA	P13498	195 aa		11.2	□□□□□ -0.62
TPM4-215	ENST00000592138	ALDH5A1	P51649	535 aa	Predicted RBP	11.2	□□□□□ -0.62
TPM4-215	ENST00000592138	CNTN2	Q02246	1040 aa		11.2	□□□□□ -0.62
TPM4-215	ENST00000592138	CACNB2	Q08289	660 aa	Predicted RBP	11.2	□□□□□ -0.62
TPM4-215	ENST00000592138	SSRP1	Q08945	709 aa	Known RBP	11.2	□□□□□ -0.62
TPM4-215	ENST00000592138	STK3	Q13188	491 aa		11.2	□□□□□ -0.62
TPM4-215	ENST00000592138	HEATR3	Q7Z4Q2	680 aa		11.2	□□□□□ -0.62
TPM4-215	ENST00000592138	SYTL5	Q8TDW5	730 aa	Predicted RBP	11.2	□□□□□ -0.62
TPM4-215	ENST00000592138	PIBF1	Q8WXW3	757 aa		11.2	□□□□□ -0.62
TPM4-215	ENST00000592138	PHKB	Q93100	1093 aa		11.2	□□□□□ -0.62
TPM4-215	ENST00000592138	IWS1	Q96ST2	819 aa		11.2	□□□□□ -0.62
TPM4-215	ENST00000592138	LARP6	Q9BRS8	491 aa	Known RBP	11.2	□□□□□ -0.62
TPM4-215	ENST00000592138	SLC26A6	Q9BXS9	759 aa		11.2	□□□□□ -0.62
TPM4-215	ENST00000592138	HMX1	Q9NP08	348 aa	Predicted RBP	11.2	□□□□□ -0.62
TPM4-215	ENST00000592138	SH3GLB2	Q9NR46	395 aa		11.2	□□□□□ -0.62
TPM4-215	ENST00000592138	BIN2	Q9UBW5	565 aa	Predicted RBP	11.2	□□□□□ -0.62
TPM4-215	ENST00000592138	hCG_1642624	A0A1W2PR95	340 aa		11.19	□□□□□ -0.62
TPM4-215	ENST00000592138	MEIS2	O14770	477 aa		11.19	□□□□□ -0.62
TPM4-215	ENST00000592138	MSC	O60682	206 aa		11.19	□□□□□ -0.62
TPM4-215	ENST00000592138	ABCB7	O75027	752 aa		11.19	□□□□□ -0.62
TPM4-215	ENST00000592138	LARGE1	O95461	756 aa		11.19	□□□□□ -0.62
TPM4-215	ENST00000592138	CALML3	P27482	149 aa		11.19	□□□□□ -0.62
TPM4-215	ENST00000592138	CYP2C19	P33261	490 aa		11.19	□□□□□ -0.62
TPM4-215	ENST00000592138	NAPA	P54920	295 aa		11.19	□□□□□ -0.62
TPM4-215	ENST00000592138	MCTP2	Q6DN12	878 aa		11.19	□□□□□ -0.62
TPM4-215	ENST00000592138	ARMCX2	Q7L311	632 aa		11.19	□□□□□ -0.62
TPM4-215	ENST00000592138	CCDC148	Q8NFR7	591 aa		11.19	□□□□□ -0.62
TPM4-215	ENST00000592138	NSUN6	Q8TEA1	469 aa	Known RBP	11.19	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms