RNA–Protein interactions for RNA: ENST00000591519.1

VPS4B-207, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 2 BASIC

Gene VPS4B, Length 551 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-207ENST00000591519 TMEM39AQ9NV64 488 aa12.3□□□□□ -0.44
VPS4B-207ENST00000591519 PRR12Q9ULL5 1215 aa12.3□□□□□ -0.44
VPS4B-207ENST00000591519 MCM3APO60318 1980 aa12.29□□□□□ -0.44
VPS4B-207ENST00000591519 MYADML2A6NDP7 307 aa12.29□□□□□ -0.44
VPS4B-207ENST00000591519 ASB14A6NK59 587 aa12.29□□□□□ -0.44
VPS4B-207ENST00000591519 DLL1O00548 723 aa12.29□□□□□ -0.44
VPS4B-207ENST00000591519 RANBP6O60518 1105 aaKnown RBP12.29□□□□□ -0.44
VPS4B-207ENST00000591519 NMT2O60551 498 aa12.29□□□□□ -0.44
VPS4B-207ENST00000591519 PQBP1O60828 265 aaKnown RBP12.29□□□□□ -0.44
VPS4B-207ENST00000591519 C6orf222P0C671 652 aaPredicted RBP12.29□□□□□ -0.44
VPS4B-207ENST00000591519 RAG1P15918 1043 aa12.29□□□□□ -0.44
VPS4B-207ENST00000591519 EPHB4P54760 987 aa12.29□□□□□ -0.44
VPS4B-207ENST00000591519 GNASQ5JWF2 1037 aa12.29□□□□□ -0.44
VPS4B-207ENST00000591519 KCTD1Q719H9 257 aa12.29□□□□□ -0.44
VPS4B-207ENST00000591519 DCAF4Q8WV16 495 aa12.29□□□□□ -0.44
VPS4B-207ENST00000591519 DDX27Q96GQ7 796 aaKnown RBP12.29□□□□□ -0.44
VPS4B-207ENST00000591519 TTC14Q96N46 770 aa12.29□□□□□ -0.44
VPS4B-207ENST00000591519 TRERF1Q96PN7 1200 aa12.29□□□□□ -0.44
VPS4B-207ENST00000591519 SEMA6BQ9H3T3 888 aa12.29□□□□□ -0.44
VPS4B-207ENST00000591519 RNF146Q9NTX7 359 aa12.29□□□□□ -0.44
VPS4B-207ENST00000591519 GNEQ9Y223 722 aaKnown RBP12.29□□□□□ -0.44
VPS4B-207ENST00000591519 MROH7Q68CQ1 1323 aa12.29□□□□□ -0.44
VPS4B-207ENST00000591519 LAMA2P24043 3122 aaKnown RBP12.28□□□□□ -0.44
VPS4B-207ENST00000591519 ARVCFO00192 962 aa12.28□□□□□ -0.44
VPS4B-207ENST00000591519 TIMP1P01033 207 aa12.28□□□□□ -0.44
VPS4B-207ENST00000591519 HSPD1P10809 573 aaKnown RBP12.28□□□□□ -0.44
VPS4B-207ENST00000591519 PCP11498 1178 aaKnown RBP12.28□□□□□ -0.44
VPS4B-207ENST00000591519 PTPN5P54829 565 aa12.28□□□□□ -0.44
VPS4B-207ENST00000591519 ZNF697Q5TEC3 545 aa12.28□□□□□ -0.44
VPS4B-207ENST00000591519 SMC5Q8IY18 1101 aa12.28□□□□□ -0.44
VPS4B-207ENST00000591519 MORC4Q8TE76 937 aa12.28□□□□□ -0.44
VPS4B-207ENST00000591519 FAM227BQ96M60 508 aa12.28□□□□□ -0.44
VPS4B-207ENST00000591519 RANBP17Q9H2T7 1088 aaKnown RBP12.28□□□□□ -0.44
VPS4B-207ENST00000591519 HOMER2Q9NSB8 354 aa12.28□□□□□ -0.44
VPS4B-207ENST00000591519 CYP39A1Q9NYL5 469 aa12.28□□□□□ -0.44
VPS4B-207ENST00000591519 TBX21Q9UL17 535 aa12.28□□□□□ -0.44
VPS4B-207ENST00000591519 Q9Y3F1 56 aa12.28□□□□□ -0.44
VPS4B-207ENST00000591519 ZMYM6O95789 1325 aa12.28□□□□□ -0.44
VPS4B-207ENST00000591519 LOC102724159A0A0B4J2E5 919 aa12.27□□□□□ -0.45
VPS4B-207ENST00000591519 A0A0D9SFI3 127 aa12.27□□□□□ -0.45
VPS4B-207ENST00000591519 ICAM1P05362 532 aa12.27□□□□□ -0.45
VPS4B-207ENST00000591519 TOP1P11387 765 aaKnown RBP12.27□□□□□ -0.45
VPS4B-207ENST00000591519 ALAS1P13196 640 aa12.27□□□□□ -0.45
VPS4B-207ENST00000591519 TNFAIP2Q03169 654 aa12.27□□□□□ -0.45
VPS4B-207ENST00000591519 FPGSQ05932 587 aa12.27□□□□□ -0.45
VPS4B-207ENST00000591519 IKQ13123 557 aaPredicted RBP12.27□□□□□ -0.45
VPS4B-207ENST00000591519 PWP2Q15269 919 aaKnown RBP12.27□□□□□ -0.45
VPS4B-207ENST00000591519 MUM1L1Q5H9M0 696 aa12.27□□□□□ -0.45
VPS4B-207ENST00000591519 IQSEC1Q6DN90 963 aa12.27□□□□□ -0.45
VPS4B-207ENST00000591519 TAPT1Q6NXT6 567 aa12.27□□□□□ -0.45
VPS4B-207ENST00000591519 SLC43A3Q8NBI5 491 aa12.27□□□□□ -0.45
VPS4B-207ENST00000591519 TMEM47Q9BQJ4 181 aa12.27□□□□□ -0.45
VPS4B-207ENST00000591519 SEZ6LQ9BYH1 1024 aa12.27□□□□□ -0.45
VPS4B-207ENST00000591519 OSBPL3Q9H4L5 887 aa12.27□□□□□ -0.45
VPS4B-207ENST00000591519 ASTN1O14525 1302 aa12.27□□□□□ -0.45
VPS4B-207ENST00000591519 A0A0C4DFX4 3053 aa12.26□□□□□ -0.45
VPS4B-207ENST00000591519 TMEM265A0A087WTH1 108 aa12.26□□□□□ -0.45
VPS4B-207ENST00000591519 A0A0U1RQG5 324 aaPredicted RBP12.26□□□□□ -0.45
VPS4B-207ENST00000591519 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.26□□□□□ -0.45
VPS4B-207ENST00000591519 CABYRO75952 493 aa12.26□□□□□ -0.45
VPS4B-207ENST00000591519 CD4P01730 458 aa12.26□□□□□ -0.45
VPS4B-207ENST00000591519 NT5C2P49902 561 aa12.26□□□□□ -0.45
VPS4B-207ENST00000591519 SNAP25P60880 206 aa12.26□□□□□ -0.45
VPS4B-207ENST00000591519 TTBK2Q6IQ55 1244 aa12.26□□□□□ -0.45
VPS4B-207ENST00000591519 MFSD5Q6N075 450 aa12.26□□□□□ -0.45
VPS4B-207ENST00000591519 CCDC174Q6PII3 467 aa12.26□□□□□ -0.45
VPS4B-207ENST00000591519 FAM126BQ8IXS8 530 aa12.26□□□□□ -0.45
VPS4B-207ENST00000591519 CHMP4CQ96CF2 233 aa12.26□□□□□ -0.45
VPS4B-207ENST00000591519 CDX2Q99626 313 aaPredicted RBP12.26□□□□□ -0.45
VPS4B-207ENST00000591519 ADAM33Q9BZ11 813 aa12.26□□□□□ -0.45
VPS4B-207ENST00000591519 RWDD1Q9H446 243 aaPredicted RBP12.26□□□□□ -0.45
VPS4B-207ENST00000591519 PNMA2Q9UL42 364 aa12.26□□□□□ -0.45
VPS4B-207ENST00000591519 CCPG1Q9ULG6 757 aa12.26□□□□□ -0.45
VPS4B-207ENST00000591519 ISY1Q9ULR0 285 aaKnown RBP12.26□□□□□ -0.45
VPS4B-207ENST00000591519 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.25□□□□□ -0.45
VPS4B-207ENST00000591519 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.25□□□□□ -0.45
VPS4B-207ENST00000591519 SNHG28P0DPA3 235 aa12.25□□□□□ -0.45
VPS4B-207ENST00000591519 SMPD1P17405 629 aa12.25□□□□□ -0.45
VPS4B-207ENST00000591519 SDSP20132 328 aa12.25□□□□□ -0.45
VPS4B-207ENST00000591519 NMIQ13287 307 aaPredicted RBP12.25□□□□□ -0.45
VPS4B-207ENST00000591519 AKNAD1Q5T1N1 836 aa12.25□□□□□ -0.45
VPS4B-207ENST00000591519 C16orf59Q7L2K0 433 aa12.25□□□□□ -0.45
VPS4B-207ENST00000591519 RASGRP2Q7LDG7 609 aa12.25□□□□□ -0.45
VPS4B-207ENST00000591519 ZNF589Q86UQ0 364 aaPredicted RBP12.25□□□□□ -0.45
VPS4B-207ENST00000591519 VTI1AQ96AJ9 217 aa12.25□□□□□ -0.45
VPS4B-207ENST00000591519 RNPC3Q96LT9 517 aaKnown RBP12.25□□□□□ -0.45
VPS4B-207ENST00000591519 FAM161BQ96MY7 647 aa12.25□□□□□ -0.45
VPS4B-207ENST00000591519 LNPKQ9C0E8 428 aa12.25□□□□□ -0.45
VPS4B-207ENST00000591519 TTYH1Q9H313 450 aaPredicted RBP12.25□□□□□ -0.45
VPS4B-207ENST00000591519 VTA1Q9NP79 307 aa12.25□□□□□ -0.45
VPS4B-207ENST00000591519 CCDC171Q6TFL3 1326 aa12.25□□□□□ -0.45
VPS4B-207ENST00000591519 RBM47A0AV96 593 aaKnown RBP12.24□□□□□ -0.45
VPS4B-207ENST00000591519 TLR3O15455 904 aaKnown RBP12.24□□□□□ -0.45
VPS4B-207ENST00000591519 DYNC1LI2O43237 492 aaPredicted RBP12.24□□□□□ -0.45
VPS4B-207ENST00000591519 PDHBP11177 359 aa12.24□□□□□ -0.45
VPS4B-207ENST00000591519 SLC16A2P36021 539 aa12.24□□□□□ -0.45
VPS4B-207ENST00000591519 MFAP1P55081 439 aaKnown RBP12.24□□□□□ -0.45
VPS4B-207ENST00000591519 BEX3Q00994 111 aa12.24□□□□□ -0.45
VPS4B-207ENST00000591519 PPIGQ13427 754 aaKnown RBP eCLIP12.24□□□□□ -0.45
VPS4B-207ENST00000591519 BAATQ14032 418 aaPredicted RBP12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms