RNA–Protein interactions for RNA: ENST00000589349.5

DNMT1-219, Transcript of DNA methyltransferase 1, human

TSL 4

Gene DNMT1, Length 603 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-219	ENST00000589349	CERS5	Q8N5B7	392 aa		10.17	□□□□□ -0.78
DNMT1-219	ENST00000589349	IL22RA1	Q8N6P7	574 aa		10.17	□□□□□ -0.78
DNMT1-219	ENST00000589349	NACC1	Q96RE7	527 aa		10.17	□□□□□ -0.78
DNMT1-219	ENST00000589349	BCL11A	Q9H165	835 aa		10.17	□□□□□ -0.78
DNMT1-219	ENST00000589349	DEFB129	Q9H1M3	183 aa		10.17	□□□□□ -0.78
DNMT1-219	ENST00000589349	GNL3L	Q9NVN8	582 aa	Known RBP	10.17	□□□□□ -0.78
DNMT1-219	ENST00000589349	ANGEL1	Q9UNK9	670 aa	Known RBP	10.17	□□□□□ -0.78
DNMT1-219	ENST00000589349	PA2G4	Q9UQ80	394 aa	Known RBP	10.17	□□□□□ -0.78
DNMT1-219	ENST00000589349	PCDHAC2	Q9Y5I4	1007 aa		10.17	□□□□□ -0.78
DNMT1-219	ENST00000589349	TRPM7	Q96QT4	1865 aa		10.17	□□□□□ -0.78
DNMT1-219	ENST00000589349	TCP10L2	B9ZVM9	353 aa		10.16	□□□□□ -0.78
DNMT1-219	ENST00000589349	FAM229A	H3BQW9	127 aa		10.16	□□□□□ -0.78
DNMT1-219	ENST00000589349	HSPA8	P11142	646 aa	Known RBP	10.16	□□□□□ -0.78
DNMT1-219	ENST00000589349	ATP2B3	Q16720	1220 aa		10.16	□□□□□ -0.78
DNMT1-219	ENST00000589349	ATF7IP	Q6VMQ6	1270 aa		10.16	□□□□□ -0.78
DNMT1-219	ENST00000589349	FMR1NB	Q8N0W7	255 aa	Predicted RBP	10.16	□□□□□ -0.78
DNMT1-219	ENST00000589349	TDRD7	Q8NHU6	1098 aa	Known RBP	10.16	□□□□□ -0.78
DNMT1-219	ENST00000589349	TBC1D22A	Q8WUA7	517 aa		10.16	□□□□□ -0.78
DNMT1-219	ENST00000589349	LPIN2	Q92539	896 aa		10.16	□□□□□ -0.78
DNMT1-219	ENST00000589349	ALKBH8	Q96BT7	664 aa	Known RBP	10.16	□□□□□ -0.78
DNMT1-219	ENST00000589349	HHIPL1	Q96JK4	782 aa		10.16	□□□□□ -0.78
DNMT1-219	ENST00000589349	PRMT6	Q96LA8	375 aa	Predicted RBP	10.16	□□□□□ -0.78
DNMT1-219	ENST00000589349	NEUROD6	Q96NK8	337 aa		10.16	□□□□□ -0.78
DNMT1-219	ENST00000589349	TDRD3	Q9H7E2	651 aa	Known RBP	10.16	□□□□□ -0.78
DNMT1-219	ENST00000589349	SRA1	Q9HD15	236 aa	Known RBP	10.16	□□□□□ -0.78
DNMT1-219	ENST00000589349	PRDM10	Q9NQV6	1147 aa		10.16	□□□□□ -0.78
DNMT1-219	ENST00000589349	TMOD2	Q9NZR1	351 aa		10.16	□□□□□ -0.78
DNMT1-219	ENST00000589349	POLR2A	P24928	1970 aa	Known RBP	10.15	□□□□□ -0.78
DNMT1-219	ENST00000589349	CA12	O43570	354 aa		10.15	□□□□□ -0.78
DNMT1-219	ENST00000589349	TRPA1	O75762	1119 aa		10.15	□□□□□ -0.78
DNMT1-219	ENST00000589349	GNAI2	P04899	355 aa		10.15	□□□□□ -0.78
DNMT1-219	ENST00000589349	PTPRA	P18433	802 aa		10.15	□□□□□ -0.78
DNMT1-219	ENST00000589349	CRK	P46108	304 aa		10.15	□□□□□ -0.78
DNMT1-219	ENST00000589349	FKBP1B	P68106	108 aa		10.15	□□□□□ -0.78
DNMT1-219	ENST00000589349	PTPN12	Q05209	780 aa	Known RBP	10.15	□□□□□ -0.78
DNMT1-219	ENST00000589349	PLA2G4E	Q3MJ16	856 aa		10.15	□□□□□ -0.78
DNMT1-219	ENST00000589349	SUPT20HL1	Q3ZLR7	823 aa		10.15	□□□□□ -0.78
DNMT1-219	ENST00000589349	FBXO33	Q7Z6M2	555 aa		10.15	□□□□□ -0.78
DNMT1-219	ENST00000589349	ITPRIP	Q8IWB1	547 aa		10.15	□□□□□ -0.78
DNMT1-219	ENST00000589349	ARHGAP45	Q92619	1136 aa		10.15	□□□□□ -0.78
DNMT1-219	ENST00000589349	DZANK1	Q9NVP4	752 aa		10.15	□□□□□ -0.78
DNMT1-219	ENST00000589349	FZD1	Q9UP38	647 aa		10.15	□□□□□ -0.78
DNMT1-219	ENST00000589349	TNN	Q9UQP3	1299 aa		10.15	□□□□□ -0.78
DNMT1-219	ENST00000589349	FAM205A	Q6ZU69	1335 aa		10.14	□□□□□ -0.79
DNMT1-219	ENST00000589349	GPR182	O15218	404 aa		10.14	□□□□□ -0.79
DNMT1-219	ENST00000589349	CPNE3	O75131	537 aa	Known RBP	10.14	□□□□□ -0.79
DNMT1-219	ENST00000589349	IGHA1	P01876	353 aa		10.14	□□□□□ -0.79
DNMT1-219	ENST00000589349	TRIM27	P14373	513 aa		10.14	□□□□□ -0.79
DNMT1-219	ENST00000589349	IL15	P40933	162 aa	Predicted RBP	10.14	□□□□□ -0.79
DNMT1-219	ENST00000589349	TNNI2	P48788	182 aa		10.14	□□□□□ -0.79
DNMT1-219	ENST00000589349	FKBP1A	P62942	108 aa	Known RBP	10.14	□□□□□ -0.79
DNMT1-219	ENST00000589349	G3BP1	Q13283	466 aa	Known RBP eCLIP	10.14	□□□□□ -0.79
DNMT1-219	ENST00000589349	TNFAIP1	Q13829	316 aa		10.14	□□□□□ -0.79
DNMT1-219	ENST00000589349	RASA3	Q14644	834 aa		10.14	□□□□□ -0.79
DNMT1-219	ENST00000589349	INTS3	Q68E01	1043 aa	Known RBP	10.14	□□□□□ -0.79
DNMT1-219	ENST00000589349	MAP4K3	Q8IVH8	894 aa		10.14	□□□□□ -0.79
DNMT1-219	ENST00000589349	DZIP1L	Q8IYY4	767 aa	Known RBP	10.14	□□□□□ -0.79
DNMT1-219	ENST00000589349	TEKT1	Q969V4	418 aa		10.14	□□□□□ -0.79
DNMT1-219	ENST00000589349	LACRT	Q9GZZ8	138 aa		10.14	□□□□□ -0.79
DNMT1-219	ENST00000589349	DNAJC25	Q9H1X3	360 aa		10.14	□□□□□ -0.79
DNMT1-219	ENST00000589349	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	10.14	□□□□□ -0.79
DNMT1-219	ENST00000589349	IRS2	Q9Y4H2	1338 aa		10.13	□□□□□ -0.79
DNMT1-219	ENST00000589349	PDE2A	O00408	941 aa	Predicted RBP	10.13	□□□□□ -0.79
DNMT1-219	ENST00000589349	IGHA2	P01877	340 aa		10.13	□□□□□ -0.79
DNMT1-219	ENST00000589349	CDC27	P30260	824 aa		10.13	□□□□□ -0.79
DNMT1-219	ENST00000589349	IREB2	P48200	963 aa	Known RBP	10.13	□□□□□ -0.79
DNMT1-219	ENST00000589349	RFX5	P48382	616 aa	Predicted RBP	10.13	□□□□□ -0.79
DNMT1-219	ENST00000589349	TMC7	Q7Z402	723 aa		10.13	□□□□□ -0.79
DNMT1-219	ENST00000589349	RASAL3	Q86YV0	1011 aa		10.13	□□□□□ -0.79
DNMT1-219	ENST00000589349	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	10.13	□□□□□ -0.79
DNMT1-219	ENST00000589349	TMEM57	Q8N5G2	664 aa		10.13	□□□□□ -0.79
DNMT1-219	ENST00000589349	TMEM102	Q8N9M5	508 aa	Predicted RBP	10.13	□□□□□ -0.79
DNMT1-219	ENST00000589349	OSMR	Q99650	979 aa		10.13	□□□□□ -0.79
DNMT1-219	ENST00000589349	NIF3L1	Q9GZT8	377 aa		10.13	□□□□□ -0.79
DNMT1-219	ENST00000589349	ZNF70	Q9UC06	446 aa	Predicted RBP	10.13	□□□□□ -0.79
DNMT1-219	ENST00000589349	PPME1	Q9Y570	386 aa		10.13	□□□□□ -0.79
DNMT1-219	ENST00000589349	CCDC85C	A6NKD9	419 aa		10.12	□□□□□ -0.79
DNMT1-219	ENST00000589349	FAM155A	B1AL88	458 aa	Predicted RBP	10.12	□□□□□ -0.79
DNMT1-219	ENST00000589349	CIAO1	O76071	339 aa		10.12	□□□□□ -0.79
DNMT1-219	ENST00000589349	ACPP	P15309	386 aa		10.12	□□□□□ -0.79
DNMT1-219	ENST00000589349	CACNB3	P54284	484 aa		10.12	□□□□□ -0.79
DNMT1-219	ENST00000589349	TIMM10	P62072	90 aa		10.12	□□□□□ -0.79
DNMT1-219	ENST00000589349	TFCP2	Q12800	502 aa		10.12	□□□□□ -0.79
DNMT1-219	ENST00000589349	ORC1	Q13415	861 aa		10.12	□□□□□ -0.79
DNMT1-219	ENST00000589349	NBPF12	Q5TAG4	269 aa	Predicted RBP	10.12	□□□□□ -0.79
DNMT1-219	ENST00000589349	ATG9A	Q7Z3C6	839 aa		10.12	□□□□□ -0.79
DNMT1-219	ENST00000589349	FBXO11	Q86XK2	927 aa		10.12	□□□□□ -0.79
DNMT1-219	ENST00000589349	GALNT12	Q8IXK2	581 aa		10.12	□□□□□ -0.79
DNMT1-219	ENST00000589349	VGLL2	Q8N8G2	317 aa		10.12	□□□□□ -0.79
DNMT1-219	ENST00000589349	WDR66	Q8TBY9	1149 aa		10.12	□□□□□ -0.79
DNMT1-219	ENST00000589349	POP1	Q99575	1024 aa	Known RBP	10.12	□□□□□ -0.79
DNMT1-219	ENST00000589349	ZKSCAN3	Q9BRR0	538 aa		10.12	□□□□□ -0.79
DNMT1-219	ENST00000589349	ABCF2	Q9UG63	623 aa		10.12	□□□□□ -0.79
DNMT1-219	ENST00000589349	AKAP2	Q9Y2D5	859 aa		10.12	□□□□□ -0.79
DNMT1-219	ENST00000589349	ZNF609	O15014	1411 aa		10.12	□□□□□ -0.79
DNMT1-219	ENST00000589349	MAST3	O60307	1309 aa		10.11	□□□□□ -0.79
DNMT1-219	ENST00000589349	LDHB	P07195	334 aa	Known RBP	10.11	□□□□□ -0.79
DNMT1-219	ENST00000589349	ADORA1	P30542	326 aa		10.11	□□□□□ -0.79
DNMT1-219	ENST00000589349	GPAT2	Q6NUI2	795 aa		10.11	□□□□□ -0.79
DNMT1-219	ENST00000589349	FAM117B	Q6P1L5	589 aa		10.11	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms