RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	ATP13A1	Q9HD20	1204 aa		6.37	□□□□□ -1.39
SS18-223	ENST00000583595	AASDHPPT	Q9NRN7	309 aa		6.37	□□□□□ -1.39
SS18-223	ENST00000583595	ADAM30	Q9UKF2	790 aa		6.37	□□□□□ -1.39
SS18-223	ENST00000583595	TNPO3	Q9Y5L0	923 aa	Known RBP	6.37	□□□□□ -1.39
SS18-223	ENST00000583595	CAPN6	Q9Y6Q1	641 aa		6.37	□□□□□ -1.39
SS18-223	ENST00000583595	BLACE	A4D250	179 aa		6.36	□□□□□ -1.39
SS18-223	ENST00000583595		H3BS24	57 aa		6.36	□□□□□ -1.39
SS18-223	ENST00000583595	GPR39	O43194	453 aa		6.36	□□□□□ -1.39
SS18-223	ENST00000583595	CAPNS1	P04632	268 aa		6.36	□□□□□ -1.39
SS18-223	ENST00000583595	PMS1	P54277	932 aa	Known RBP	6.36	□□□□□ -1.39
SS18-223	ENST00000583595	OS9	Q13438	667 aa	Predicted RBP	6.36	□□□□□ -1.39
SS18-223	ENST00000583595	ZNF460	Q14592	562 aa		6.36	□□□□□ -1.39
SS18-223	ENST00000583595	SEPT7	Q16181	437 aa	Known RBP	6.36	□□□□□ -1.39
SS18-223	ENST00000583595	HEATR6	Q6AI08	1181 aa	Known RBP	6.36	□□□□□ -1.39
SS18-223	ENST00000583595	KSR2	Q6VAB6	950 aa		6.36	□□□□□ -1.39
SS18-223	ENST00000583595	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	6.36	□□□□□ -1.39
SS18-223	ENST00000583595	ADAT2	Q7Z6V5	191 aa	Known RBP	6.36	□□□□□ -1.39
SS18-223	ENST00000583595	ZNF513	Q8N8E2	541 aa	Predicted RBP	6.36	□□□□□ -1.39
SS18-223	ENST00000583595	FAM13C	Q8NE31	585 aa		6.36	□□□□□ -1.39
SS18-223	ENST00000583595	DHRS1	Q96LJ7	313 aa		6.36	□□□□□ -1.39
SS18-223	ENST00000583595	RTFDC1	Q9BY42	306 aa	Predicted RBP	6.36	□□□□□ -1.39
SS18-223	ENST00000583595	KRTAP4-7	Q9BYR0	210 aa		6.36	□□□□□ -1.39
SS18-223	ENST00000583595	SEMA3G	Q9NS98	782 aa		6.36	□□□□□ -1.39
SS18-223	ENST00000583595	LMCD1	Q9NZU5	365 aa		6.36	□□□□□ -1.39
SS18-223	ENST00000583595	NDOR1	Q9UHB4	597 aa		6.36	□□□□□ -1.39
SS18-223	ENST00000583595	ST14	Q9Y5Y6	855 aa		6.36	□□□□□ -1.39
SS18-223	ENST00000583595	CARMIL2	Q6F5E8	1435 aa		6.35	□□□□□ -1.39
SS18-223	ENST00000583595	PLIN1	O60240	522 aa		6.35	□□□□□ -1.39
SS18-223	ENST00000583595	KPNA6	O60684	536 aa		6.35	□□□□□ -1.39
SS18-223	ENST00000583595	LDHA	P00338	332 aa	Known RBP	6.35	□□□□□ -1.39
SS18-223	ENST00000583595	C6orf222	P0C671	652 aa	Predicted RBP	6.35	□□□□□ -1.39
SS18-223	ENST00000583595	FGFR1	P11362	822 aa		6.35	□□□□□ -1.39
SS18-223	ENST00000583595	ID4	P47928	161 aa		6.35	□□□□□ -1.39
SS18-223	ENST00000583595	ZNF143	P52747	638 aa	Predicted RBP	6.35	□□□□□ -1.39
SS18-223	ENST00000583595	SUMO1	P63165	101 aa	Known RBP	6.35	□□□□□ -1.39
SS18-223	ENST00000583595	BBS9	Q3SYG4	887 aa		6.35	□□□□□ -1.39
SS18-223	ENST00000583595	OGFOD2	Q6N063	350 aa		6.35	□□□□□ -1.39
SS18-223	ENST00000583595	SLC4A10	Q6U841	1118 aa		6.35	□□□□□ -1.39
SS18-223	ENST00000583595	BRAP	Q7Z569	592 aa		6.35	□□□□□ -1.39
SS18-223	ENST00000583595	ZNF227	Q86WZ6	799 aa		6.35	□□□□□ -1.39
SS18-223	ENST00000583595	PASD1	Q8IV76	773 aa		6.35	□□□□□ -1.39
SS18-223	ENST00000583595	PHACTR4	Q8IZ21	702 aa		6.35	□□□□□ -1.39
SS18-223	ENST00000583595	PPM1K	Q8N3J5	372 aa		6.35	□□□□□ -1.39
SS18-223	ENST00000583595	COG1	Q8WTW3	980 aa		6.35	□□□□□ -1.39
SS18-223	ENST00000583595	SCLY	Q96I15	445 aa		6.35	□□□□□ -1.39
SS18-223	ENST00000583595	COX4I2	Q96KJ9	171 aa		6.35	□□□□□ -1.39
SS18-223	ENST00000583595	HAUS7	Q99871	368 aa		6.35	□□□□□ -1.39
SS18-223	ENST00000583595	CARS2	Q9HA77	564 aa	Known RBP	6.35	□□□□□ -1.39
SS18-223	ENST00000583595	SLC52A2	Q9HAB3	445 aa		6.35	□□□□□ -1.39
SS18-223	ENST00000583595	SUCO	Q9UBS9	1254 aa	Known RBP	6.35	□□□□□ -1.39
SS18-223	ENST00000583595	COMMD10	Q9Y6G5	202 aa		6.35	□□□□□ -1.39
SS18-223	ENST00000583595	TNKS	O95271	1327 aa		6.34	□□□□□ -1.39
SS18-223	ENST00000583595	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	6.34	□□□□□ -1.39
SS18-223	ENST00000583595	RGS13	O14921	159 aa		6.34	□□□□□ -1.39
SS18-223	ENST00000583595	OPA1	O60313	960 aa		6.34	□□□□□ -1.39
SS18-223	ENST00000583595	UBOX5	O94941	541 aa		6.34	□□□□□ -1.39
SS18-223	ENST00000583595	MYL1	P05976	194 aa		6.34	□□□□□ -1.39
SS18-223	ENST00000583595	POU3F2	P20265	443 aa	Predicted RBP	6.34	□□□□□ -1.39
SS18-223	ENST00000583595	ETV3	P41162	512 aa		6.34	□□□□□ -1.39
SS18-223	ENST00000583595	HDAC1	Q13547	482 aa	Predicted RBP	6.34	□□□□□ -1.39
SS18-223	ENST00000583595	MLC1	Q15049	377 aa		6.34	□□□□□ -1.39
SS18-223	ENST00000583595	TRIM61	Q5EBN2	209 aa		6.34	□□□□□ -1.39
SS18-223	ENST00000583595	DCAF15	Q66K64	600 aa		6.34	□□□□□ -1.39
SS18-223	ENST00000583595	NECAB2	Q7Z6G3	386 aa		6.34	□□□□□ -1.39
SS18-223	ENST00000583595	DNAJB8	Q8NHS0	232 aa		6.34	□□□□□ -1.39
SS18-223	ENST00000583595	BAHD1	Q8TBE0	780 aa	Predicted RBP	6.34	□□□□□ -1.39
SS18-223	ENST00000583595	FAM168A	Q92567	244 aa		6.34	□□□□□ -1.39
SS18-223	ENST00000583595	ZNF512B	Q96KM6	892 aa	Predicted RBP	6.34	□□□□□ -1.39
SS18-223	ENST00000583595	CDH19	Q9H159	772 aa		6.34	□□□□□ -1.39
SS18-223	ENST00000583595	SFMBT1	Q9UHJ3	866 aa		6.34	□□□□□ -1.39
SS18-223	ENST00000583595	TRHDE	Q9UKU6	1024 aa		6.34	□□□□□ -1.39
SS18-223	ENST00000583595	CEP131	Q9UPN4	1083 aa		6.34	□□□□□ -1.39
SS18-223	ENST00000583595	NEMP1	O14524	444 aa		6.33	□□□□□ -1.4
SS18-223	ENST00000583595	GABRD	O14764	452 aa		6.33	□□□□□ -1.4
SS18-223	ENST00000583595	CBFA2T2	O43439	604 aa		6.33	□□□□□ -1.4
SS18-223	ENST00000583595	JMJD7	P0C870	316 aa		6.33	□□□□□ -1.4
SS18-223	ENST00000583595	PAX3	P23760	479 aa		6.33	□□□□□ -1.4
SS18-223	ENST00000583595	GBP1	P32455	592 aa		6.33	□□□□□ -1.4
SS18-223	ENST00000583595	KIR3DL1	P43629	444 aa		6.33	□□□□□ -1.4
SS18-223	ENST00000583595	TMPRSS15	P98073	1019 aa		6.33	□□□□□ -1.4
SS18-223	ENST00000583595	TNK2	Q07912	1038 aa		6.33	□□□□□ -1.4
SS18-223	ENST00000583595	DHCR24	Q15392	516 aa		6.33	□□□□□ -1.4
SS18-223	ENST00000583595	SF1	Q15637	639 aa	Known RBP	6.33	□□□□□ -1.4
SS18-223	ENST00000583595	CNTD1	Q8N815	330 aa		6.33	□□□□□ -1.4
SS18-223	ENST00000583595	FLAD1	Q8NFF5	587 aa		6.33	□□□□□ -1.4
SS18-223	ENST00000583595	UBE2F	Q969M7	185 aa		6.33	□□□□□ -1.4
SS18-223	ENST00000583595	IL17RA	Q96F46	866 aa		6.33	□□□□□ -1.4
SS18-223	ENST00000583595	PCGF6	Q9BYE7	350 aa		6.33	□□□□□ -1.4
SS18-223	ENST00000583595	KLHL25	Q9H0H3	589 aa		6.33	□□□□□ -1.4
SS18-223	ENST00000583595	ZSWIM5	Q9P217	1185 aa		6.33	□□□□□ -1.4
SS18-223	ENST00000583595	ZNF180	Q9UJW8	692 aa		6.33	□□□□□ -1.4
SS18-223	ENST00000583595	ZNF451	Q9Y4E5	1061 aa		6.33	□□□□□ -1.4
SS18-223	ENST00000583595	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	6.33	□□□□□ -1.4
SS18-223	ENST00000583595	CCDC180	Q9P1Z9	1646 aa		6.32	□□□□□ -1.4
SS18-223	ENST00000583595	DLX3	O60479	287 aa		6.32	□□□□□ -1.4
SS18-223	ENST00000583595	NAT2	P11245	290 aa		6.32	□□□□□ -1.4
SS18-223	ENST00000583595	ZSCAN20	P17040	1043 aa	Predicted RBP	6.32	□□□□□ -1.4
SS18-223	ENST00000583595	YARS	P54577	528 aa	Known RBP	6.32	□□□□□ -1.4
SS18-223	ENST00000583595	PIN1	Q13526	163 aa	Predicted RBP	6.32	□□□□□ -1.4
SS18-223	ENST00000583595	SKOR2	Q2VWA4	1001 aa	Predicted RBP	6.32	□□□□□ -1.4

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