RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 TRAK2O60296 914 aa11.59□□□□□ -0.55
SMG1-208ENST00000563448 PEX10O60683 326 aa11.59□□□□□ -0.55
SMG1-208ENST00000563448 CNMDO75829 334 aa11.59□□□□□ -0.55
SMG1-208ENST00000563448 MARCKSP29966 332 aaPredicted RBP11.59□□□□□ -0.55
SMG1-208ENST00000563448 ZNF157P51786 506 aaPredicted RBP11.59□□□□□ -0.55
SMG1-208ENST00000563448 UBE2HP62256 183 aa11.59□□□□□ -0.55
SMG1-208ENST00000563448 HERVK_113P62684 666 aa11.59□□□□□ -0.55
SMG1-208ENST00000563448 AP3B2Q13367 1082 aa11.59□□□□□ -0.55
SMG1-208ENST00000563448 RGMBQ6NW40 437 aa11.59□□□□□ -0.55
SMG1-208ENST00000563448 NEK8Q86SG6 692 aa11.59□□□□□ -0.55
SMG1-208ENST00000563448 KCNG4Q8TDN1 519 aa11.59□□□□□ -0.55
SMG1-208ENST00000563448 TRERF1Q96PN7 1200 aa11.59□□□□□ -0.55
SMG1-208ENST00000563448 ANO3Q9BYT9 981 aa11.59□□□□□ -0.55
SMG1-208ENST00000563448 HOMER2Q9NSB8 354 aa11.59□□□□□ -0.55
SMG1-208ENST00000563448 MRVI1Q9Y6F6 885 aa11.59□□□□□ -0.55
SMG1-208ENST00000563448 BTBD19C9JJ37 291 aa11.59□□□□□ -0.55
SMG1-208ENST00000563448 GCOM1H8Y6P7 765 aaPredicted RBP11.59□□□□□ -0.55
SMG1-208ENST00000563448 PPP6R2O75170 966 aa11.59□□□□□ -0.55
SMG1-208ENST00000563448 POLR2MP0CAP2 368 aa11.59□□□□□ -0.55
SMG1-208ENST00000563448 MCM7P33993 719 aa11.59□□□□□ -0.55
SMG1-208ENST00000563448 STAT3P40763 770 aa11.59□□□□□ -0.55
SMG1-208ENST00000563448 HSD17B4P51659 736 aa11.59□□□□□ -0.55
SMG1-208ENST00000563448 GHRHRQ02643 423 aa11.59□□□□□ -0.55
SMG1-208ENST00000563448 MCTP2Q6DN12 878 aa11.59□□□□□ -0.55
SMG1-208ENST00000563448 TEX2Q8IWB9 1127 aa11.59□□□□□ -0.55
SMG1-208ENST00000563448 MB21D1Q8N884 522 aa11.59□□□□□ -0.55
SMG1-208ENST00000563448 C4orf32Q8N8J7 132 aa11.59□□□□□ -0.55
SMG1-208ENST00000563448 TEX13BQ9BXU2 312 aa11.59□□□□□ -0.55
SMG1-208ENST00000563448 RNF146Q9NTX7 359 aa11.59□□□□□ -0.55
SMG1-208ENST00000563448 CEP131Q9UPN4 1083 aa11.59□□□□□ -0.55
SMG1-208ENST00000563448 FOSP01100 380 aaPredicted RBP11.58□□□□□ -0.56
SMG1-208ENST00000563448 YY1P25490 414 aa11.58□□□□□ -0.56
SMG1-208ENST00000563448 ME1P48163 572 aa11.58□□□□□ -0.56
SMG1-208ENST00000563448 PLS1Q14651 629 aa11.58□□□□□ -0.56
SMG1-208ENST00000563448 LETM2Q2VYF4 491 aa11.58□□□□□ -0.56
SMG1-208ENST00000563448 AXDND1Q5T1B0 1012 aaPredicted RBP11.58□□□□□ -0.56
SMG1-208ENST00000563448 ANKRD23Q86SG2 305 aa11.58□□□□□ -0.56
SMG1-208ENST00000563448 FAM43AQ8N2R8 423 aa11.58□□□□□ -0.56
SMG1-208ENST00000563448 ZNF784Q8NCA9 323 aaPredicted RBP11.58□□□□□ -0.56
SMG1-208ENST00000563448 PTPN18Q99952 460 aa11.58□□□□□ -0.56
SMG1-208ENST00000563448 SLC45A1Q9Y2W3 748 aa11.58□□□□□ -0.56
SMG1-208ENST00000563448 DDX49Q9Y6V7 483 aaKnown RBP11.58□□□□□ -0.56
SMG1-208ENST00000563448 MORC2Q9Y6X9 1032 aaPredicted RBP11.58□□□□□ -0.56
SMG1-208ENST00000563448 TESPA1A2RU30 521 aaPredicted RBP11.57□□□□□ -0.56
SMG1-208ENST00000563448 SPDYE3A6NKU9 549 aa11.57□□□□□ -0.56
SMG1-208ENST00000563448 PDHXO00330 501 aa11.57□□□□□ -0.56
SMG1-208ENST00000563448 CCNT1O60563 726 aaKnown RBP11.57□□□□□ -0.56
SMG1-208ENST00000563448 SLC10A3P09131 477 aa11.57□□□□□ -0.56
SMG1-208ENST00000563448 CYP2C8P10632 490 aa11.57□□□□□ -0.56
SMG1-208ENST00000563448 ATP2C1P98194 919 aaPredicted RBP11.57□□□□□ -0.56
SMG1-208ENST00000563448 PTGDRQ13258 359 aa11.57□□□□□ -0.56
SMG1-208ENST00000563448 SKOR2Q2VWA4 1001 aaPredicted RBP11.57□□□□□ -0.56
SMG1-208ENST00000563448 TKFCQ3LXA3 575 aa11.57□□□□□ -0.56
SMG1-208ENST00000563448 ADALQ6DHV7 355 aa11.57□□□□□ -0.56
SMG1-208ENST00000563448 FCHSD1Q86WN1 690 aa11.57□□□□□ -0.56
SMG1-208ENST00000563448 MCF2L2Q86YR7 1114 aa11.57□□□□□ -0.56
SMG1-208ENST00000563448 CRYGNQ8WXF5 182 aa11.57□□□□□ -0.56
SMG1-208ENST00000563448 PAGR1Q9BTK6 254 aa11.57□□□□□ -0.56
SMG1-208ENST00000563448 TXNRD2Q9NNW7 524 aa11.57□□□□□ -0.56
SMG1-208ENST00000563448 COL20A1Q9P218 1284 aa11.57□□□□□ -0.56
SMG1-208ENST00000563448 RBPJLQ9UBG7 517 aa11.57□□□□□ -0.56
SMG1-208ENST00000563448 FBXO2Q9UK22 296 aaPredicted RBP11.57□□□□□ -0.56
SMG1-208ENST00000563448 WDR81Q562E7 1941 aa11.57□□□□□ -0.56
SMG1-208ENST00000563448 TMEM88BA6NKF7 163 aa11.57□□□□□ -0.56
SMG1-208ENST00000563448 FAM155AB1AL88 458 aaPredicted RBP11.57□□□□□ -0.56
SMG1-208ENST00000563448 BMP15O95972 392 aa11.57□□□□□ -0.56
SMG1-208ENST00000563448 PTPREP23469 700 aa11.57□□□□□ -0.56
SMG1-208ENST00000563448 GRIN1Q05586 938 aa11.57□□□□□ -0.56
SMG1-208ENST00000563448 KLHL40Q2TBA0 621 aa11.57□□□□□ -0.56
SMG1-208ENST00000563448 RIOX2Q8IUF8 465 aa11.57□□□□□ -0.56
SMG1-208ENST00000563448 SAMD3Q8N6K7 520 aa11.57□□□□□ -0.56
SMG1-208ENST00000563448 JMYQ8N9B5 988 aa11.57□□□□□ -0.56
SMG1-208ENST00000563448 CLIC6Q96NY7 704 aa11.57□□□□□ -0.56
SMG1-208ENST00000563448 MAP3K20Q9NYL2 800 aaKnown RBP11.57□□□□□ -0.56
SMG1-208ENST00000563448 PNMA3Q9UL41 463 aa11.57□□□□□ -0.56
SMG1-208ENST00000563448 LRRC37A2A6NM11 1700 aa11.56□□□□□ -0.56
SMG1-208ENST00000563448 MGAMO43451 1857 aa11.56□□□□□ -0.56
SMG1-208ENST00000563448 DOCK5Q9H7D0 1870 aa11.56□□□□□ -0.56
SMG1-208ENST00000563448 GOLGA6L4A6NEF3 574 aa11.56□□□□□ -0.56
SMG1-208ENST00000563448 MCM3APO60318 1980 aa11.56□□□□□ -0.56
SMG1-208ENST00000563448 CUTAO60888 179 aa11.56□□□□□ -0.56
SMG1-208ENST00000563448 TDP2O95551 362 aa11.56□□□□□ -0.56
SMG1-208ENST00000563448 MBD3O95983 291 aa11.56□□□□□ -0.56
SMG1-208ENST00000563448 SREBF1P36956 1147 aa11.56□□□□□ -0.56
SMG1-208ENST00000563448 USP11P51784 963 aa11.56□□□□□ -0.56
SMG1-208ENST00000563448 RPS6P62753 249 aaKnown RBP11.56□□□□□ -0.56
SMG1-208ENST00000563448 FSTL1Q12841 308 aa11.56□□□□□ -0.56
SMG1-208ENST00000563448 Q3C1V9 767 aa11.56□□□□□ -0.56
SMG1-208ENST00000563448 SLC30A10Q6XR72 485 aa11.56□□□□□ -0.56
SMG1-208ENST00000563448 RNF207Q6ZRF8 634 aa11.56□□□□□ -0.56
SMG1-208ENST00000563448 SPATC1LQ9H0A9 340 aa11.56□□□□□ -0.56
SMG1-208ENST00000563448 TMEM60Q9H2L4 133 aa11.56□□□□□ -0.56
SMG1-208ENST00000563448 ABT1Q9ULW3 272 aaKnown RBP11.56□□□□□ -0.56
SMG1-208ENST00000563448 RABGAP1Q9Y3P9 1069 aa11.56□□□□□ -0.56
SMG1-208ENST00000563448 SRPRBQ9Y5M8 271 aaKnown RBP11.56□□□□□ -0.56
SMG1-208ENST00000563448 DOCK3Q8IZD9 2030 aa11.56□□□□□ -0.56
SMG1-208ENST00000563448 A0A1W2PQ27 194 aa11.55□□□□□ -0.56
SMG1-208ENST00000563448 A0A1W2PQ64 194 aa11.55□□□□□ -0.56
SMG1-208ENST00000563448 A0A1W2PQD8 194 aa11.55□□□□□ -0.56
SMG1-208ENST00000563448 LIG1P18858 919 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms