RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 MARCKSP29966 332 aaPredicted RBP15.47■□□□□ 0.07
VPS39-206ENST00000562662 HOXA13P31271 388 aaPredicted RBP15.47■□□□□ 0.07
VPS39-206ENST00000562662 HSD17B4P51659 736 aa15.47■□□□□ 0.07
VPS39-206ENST00000562662 HERVK_113P62684 666 aa15.47■□□□□ 0.07
VPS39-206ENST00000562662 MKRN3Q13064 507 aaKnown RBP15.47■□□□□ 0.07
VPS39-206ENST00000562662 CCL15Q16663 113 aa15.47■□□□□ 0.07
VPS39-206ENST00000562662 KLHL40Q2TBA0 621 aa15.47■□□□□ 0.07
VPS39-206ENST00000562662 MUM1L1Q5H9M0 696 aa15.47■□□□□ 0.07
VPS39-206ENST00000562662 SNRNP48Q6IEG0 339 aaKnown RBP15.47■□□□□ 0.07
VPS39-206ENST00000562662 MB21D1Q8N884 522 aa15.47■□□□□ 0.07
VPS39-206ENST00000562662 BRI3BPQ8WY22 251 aa15.47■□□□□ 0.07
VPS39-206ENST00000562662 BTBD7Q9P203 1132 aa15.47■□□□□ 0.07
VPS39-206ENST00000562662 RIPK3Q9Y572 518 aa15.47■□□□□ 0.07
VPS39-206ENST00000562662 TLL2Q9Y6L7 1015 aa15.47■□□□□ 0.07
VPS39-206ENST00000562662 DDX49Q9Y6V7 483 aaKnown RBP15.47■□□□□ 0.07
VPS39-206ENST00000562662 CNMDO75829 334 aa15.46■□□□□ 0.07
VPS39-206ENST00000562662 TOMM70O94826 608 aa15.46■□□□□ 0.07
VPS39-206ENST00000562662 FOSP01100 380 aaPredicted RBP15.46■□□□□ 0.07
VPS39-206ENST00000562662 OSBPP22059 807 aa15.46■□□□□ 0.07
VPS39-206ENST00000562662 ME1P48163 572 aa15.46■□□□□ 0.07
VPS39-206ENST00000562662 ATP2C1P98194 919 aaPredicted RBP15.46■□□□□ 0.07
VPS39-206ENST00000562662 TKFCQ3LXA3 575 aa15.46■□□□□ 0.07
VPS39-206ENST00000562662 AXDND1Q5T1B0 1012 aaPredicted RBP15.46■□□□□ 0.07
VPS39-206ENST00000562662 C4orf32Q8N8J7 132 aa15.46■□□□□ 0.07
VPS39-206ENST00000562662 JMYQ8N9B5 988 aa15.46■□□□□ 0.07
VPS39-206ENST00000562662 CRYGNQ8WXF5 182 aa15.46■□□□□ 0.07
VPS39-206ENST00000562662 TRERF1Q96PN7 1200 aa15.46■□□□□ 0.07
VPS39-206ENST00000562662 TEX13BQ9BXU2 312 aa15.46■□□□□ 0.07
VPS39-206ENST00000562662 RNF146Q9NTX7 359 aa15.46■□□□□ 0.07
VPS39-206ENST00000562662 FBXO2Q9UK22 296 aaPredicted RBP15.46■□□□□ 0.07
VPS39-206ENST00000562662 SLC45A1Q9Y2W3 748 aa15.46■□□□□ 0.07
VPS39-206ENST00000562662 MRVI1Q9Y6F6 885 aa15.46■□□□□ 0.07
VPS39-206ENST00000562662 ZNFX1Q9P2E3 1918 aaKnown RBP15.46■□□□□ 0.07
VPS39-206ENST00000562662 SPDYE3A6NKU9 549 aa15.45■□□□□ 0.06
VPS39-206ENST00000562662 BTBD19C9JJ37 291 aa15.45■□□□□ 0.06
VPS39-206ENST00000562662 PTPREP23469 700 aa15.45■□□□□ 0.06
VPS39-206ENST00000562662 MCM7P33993 719 aa15.45■□□□□ 0.06
VPS39-206ENST00000562662 SREBF1P36956 1147 aa15.45■□□□□ 0.06
VPS39-206ENST00000562662 STAT3P40763 770 aa15.45■□□□□ 0.06
VPS39-206ENST00000562662 ZNF157P51786 506 aaPredicted RBP15.45■□□□□ 0.06
VPS39-206ENST00000562662 PTGDRQ13258 359 aa15.45■□□□□ 0.06
VPS39-206ENST00000562662 ORC2Q13416 577 aaPredicted RBP15.45■□□□□ 0.06
VPS39-206ENST00000562662 LETM2Q2VYF4 491 aa15.45■□□□□ 0.06
VPS39-206ENST00000562662 ADALQ6DHV7 355 aa15.45■□□□□ 0.06
VPS39-206ENST00000562662 RGMBQ6NW40 437 aa15.45■□□□□ 0.06
VPS39-206ENST00000562662 ANKRD23Q86SG2 305 aa15.45■□□□□ 0.06
VPS39-206ENST00000562662 MCF2L2Q86YR7 1114 aa15.45■□□□□ 0.06
VPS39-206ENST00000562662 SAMD3Q8N6K7 520 aa15.45■□□□□ 0.06
VPS39-206ENST00000562662 HOMER2Q9NSB8 354 aa15.45■□□□□ 0.06
VPS39-206ENST00000562662 A0A1W2PQ27 194 aa15.44■□□□□ 0.06
VPS39-206ENST00000562662 A0A1W2PQ64 194 aa15.44■□□□□ 0.06
VPS39-206ENST00000562662 A0A1W2PQD8 194 aa15.44■□□□□ 0.06
VPS39-206ENST00000562662 TESPA1A2RU30 521 aaPredicted RBP15.44■□□□□ 0.06
VPS39-206ENST00000562662 GOLGA6L4A6NEF3 574 aa15.44■□□□□ 0.06
VPS39-206ENST00000562662 CCNT1O60563 726 aaKnown RBP15.44■□□□□ 0.06
VPS39-206ENST00000562662 PEX10O60683 326 aa15.44■□□□□ 0.06
VPS39-206ENST00000562662 CUTAO60888 179 aa15.44■□□□□ 0.06
VPS39-206ENST00000562662 SLC10A3P09131 477 aa15.44■□□□□ 0.06
VPS39-206ENST00000562662 TPRNQ4KMQ1 711 aa15.44■□□□□ 0.06
VPS39-206ENST00000562662 RIOX2Q8IUF8 465 aa15.44■□□□□ 0.06
VPS39-206ENST00000562662 KRI1Q8N9T8 703 aaKnown RBP15.44■□□□□ 0.06
VPS39-206ENST00000562662 TMEM60Q9H2L4 133 aa15.44■□□□□ 0.06
VPS39-206ENST00000562662 MAP3K20Q9NYL2 800 aaKnown RBP15.44■□□□□ 0.06
VPS39-206ENST00000562662 COL20A1Q9P218 1284 aa15.44■□□□□ 0.06
VPS39-206ENST00000562662 PNMA3Q9UL41 463 aa15.44■□□□□ 0.06
VPS39-206ENST00000562662 SRPRBQ9Y5M8 271 aaKnown RBP15.44■□□□□ 0.06
VPS39-206ENST00000562662 PDHXO00330 501 aa15.43■□□□□ 0.06
VPS39-206ENST00000562662 TDP2O95551 362 aa15.43■□□□□ 0.06
VPS39-206ENST00000562662 LIG1P18858 919 aa15.43■□□□□ 0.06
VPS39-206ENST00000562662 USP11P51784 963 aa15.43■□□□□ 0.06
VPS39-206ENST00000562662 ARHGAP4P98171 946 aa15.43■□□□□ 0.06
VPS39-206ENST00000562662 GRIN1Q05586 938 aa15.43■□□□□ 0.06
VPS39-206ENST00000562662 PLS1Q14651 629 aa15.43■□□□□ 0.06
VPS39-206ENST00000562662 PPP4R3AQ6IN85 833 aa15.43■□□□□ 0.06
VPS39-206ENST00000562662 FCHSD1Q86WN1 690 aa15.43■□□□□ 0.06
VPS39-206ENST00000562662 FAM43AQ8N2R8 423 aa15.43■□□□□ 0.06
VPS39-206ENST00000562662 SYTL5Q8TDW5 730 aaPredicted RBP15.43■□□□□ 0.06
VPS39-206ENST00000562662 MBOAT7Q96N66 472 aa15.43■□□□□ 0.06
VPS39-206ENST00000562662 CLIC6Q96NY7 704 aa15.43■□□□□ 0.06
VPS39-206ENST00000562662 PTPN18Q99952 460 aa15.43■□□□□ 0.06
VPS39-206ENST00000562662 MAF1Q9H063 256 aa15.43■□□□□ 0.06
VPS39-206ENST00000562662 SPATC1LQ9H0A9 340 aa15.43■□□□□ 0.06
VPS39-206ENST00000562662 GOLPH3LQ9H4A5 285 aa15.43■□□□□ 0.06
VPS39-206ENST00000562662 ACAD9Q9H845 621 aa15.43■□□□□ 0.06
VPS39-206ENST00000562662 TXNRD2Q9NNW7 524 aa15.43■□□□□ 0.06
VPS39-206ENST00000562662 RBPJLQ9UBG7 517 aa15.43■□□□□ 0.06
VPS39-206ENST00000562662 RABGAP1Q9Y3P9 1069 aa15.43■□□□□ 0.06
VPS39-206ENST00000562662 PLXNB2O15031 1838 aa15.43■□□□□ 0.06
VPS39-206ENST00000562662 FRMPD4Q14CM0 1322 aa15.43■□□□□ 0.06
VPS39-206ENST00000562662 RPTORQ8N122 1335 aa15.43■□□□□ 0.06
VPS39-206ENST00000562662 CYP3A7-CYP3A51PA0A087WV96 503 aa15.42■□□□□ 0.06
VPS39-206ENST00000562662 TMEM88BA6NKF7 163 aa15.42■□□□□ 0.06
VPS39-206ENST00000562662 SLC37A4O43826 429 aa15.42■□□□□ 0.06
VPS39-206ENST00000562662 CYP3A4P08684 503 aa15.42■□□□□ 0.06
VPS39-206ENST00000562662 CYP2C8P10632 490 aa15.42■□□□□ 0.06
VPS39-206ENST00000562662 GCFC2P16383 781 aaKnown RBP15.42■□□□□ 0.06
VPS39-206ENST00000562662 CYP3A7P24462 503 aa15.42■□□□□ 0.06
VPS39-206ENST00000562662 YY1P25490 414 aa15.42■□□□□ 0.06
VPS39-206ENST00000562662 RPS6P62753 249 aaKnown RBP15.42■□□□□ 0.06
VPS39-206ENST00000562662 FSTL1Q12841 308 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms