RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 BAATQ14032 418 aaPredicted RBP13.72□□□□□ -0.21
USP3-220ENST00000561381 SYDE2Q5VT97 1194 aa13.72□□□□□ -0.21
USP3-220ENST00000561381 TAPT1Q6NXT6 567 aa13.72□□□□□ -0.21
USP3-220ENST00000561381 CXCL17Q6UXB2 119 aa13.72□□□□□ -0.21
USP3-220ENST00000561381 BTNL9Q6UXG8 535 aa13.72□□□□□ -0.21
USP3-220ENST00000561381 TLK2Q86UE8 772 aa13.72□□□□□ -0.21
USP3-220ENST00000561381 FAM126BQ8IXS8 530 aa13.72□□□□□ -0.21
USP3-220ENST00000561381 SMC5Q8IY18 1101 aa13.72□□□□□ -0.21
USP3-220ENST00000561381 SCUBE2Q9NQ36 999 aa13.72□□□□□ -0.21
USP3-220ENST00000561381 TCP11L1Q9NUJ3 509 aa13.72□□□□□ -0.21
USP3-220ENST00000561381 MROH7Q68CQ1 1323 aa13.71□□□□□ -0.21
USP3-220ENST00000561381 DYNC1LI2O43237 492 aaPredicted RBP13.71□□□□□ -0.21
USP3-220ENST00000561381 SEC24BO95487 1268 aa13.71□□□□□ -0.21
USP3-220ENST00000561381 SDSP20132 328 aa13.71□□□□□ -0.21
USP3-220ENST00000561381 GSE1Q14687 1217 aa13.71□□□□□ -0.21
USP3-220ENST00000561381 C16orf59Q7L2K0 433 aa13.71□□□□□ -0.21
USP3-220ENST00000561381 PLEKHM2Q8IWE5 1019 aa13.71□□□□□ -0.21
USP3-220ENST00000561381 PPP1R12CQ9BZL4 782 aa13.71□□□□□ -0.21
USP3-220ENST00000561381 GRIN2DO15399 1336 aa13.7□□□□□ -0.22
USP3-220ENST00000561381 ZMYM6O95789 1325 aa13.7□□□□□ -0.22
USP3-220ENST00000561381 NEDD4P46934 1319 aa13.7□□□□□ -0.22
USP3-220ENST00000561381 CSF2RAP15509 400 aa13.7□□□□□ -0.22
USP3-220ENST00000561381 FSCN1Q16658 493 aaKnown RBP13.7□□□□□ -0.22
USP3-220ENST00000561381 AKNAD1Q5T1N1 836 aa13.7□□□□□ -0.22
USP3-220ENST00000561381 MFSD5Q6N075 450 aa13.7□□□□□ -0.22
USP3-220ENST00000561381 SLC30A10Q6XR72 485 aa13.7□□□□□ -0.22
USP3-220ENST00000561381 MFSD6Q6ZSS7 791 aa13.7□□□□□ -0.22
USP3-220ENST00000561381 CLEC4DQ8WXI8 215 aa13.7□□□□□ -0.22
USP3-220ENST00000561381 MYLIPQ8WY64 445 aa13.7□□□□□ -0.22
USP3-220ENST00000561381 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.7□□□□□ -0.223e-7■□□□□ 11.3
USP3-220ENST00000561381 ZKSCAN3Q9BRR0 538 aa13.7□□□□□ -0.22
USP3-220ENST00000561381 PTPDC1A2A3K4 754 aa13.69□□□□□ -0.22
USP3-220ENST00000561381 CD4P01730 458 aa13.69□□□□□ -0.22
USP3-220ENST00000561381 ACRP10323 421 aa13.69□□□□□ -0.22
USP3-220ENST00000561381 CYP2C18P33260 490 aa13.69□□□□□ -0.22
USP3-220ENST00000561381 PSMC6P62333 389 aa13.69□□□□□ -0.22
USP3-220ENST00000561381 ZNF543Q08ER8 600 aa13.69□□□□□ -0.22
USP3-220ENST00000561381 ITGA7Q13683 1181 aa13.69□□□□□ -0.22
USP3-220ENST00000561381 TMEM240Q5SV17 173 aa13.69□□□□□ -0.22
USP3-220ENST00000561381 IQSEC1Q6DN90 963 aa13.69□□□□□ -0.22
USP3-220ENST00000561381 KIAA1211Q6ZU35 1233 aa13.69□□□□□ -0.22
USP3-220ENST00000561381 CHD1LQ86WJ1 897 aa13.69□□□□□ -0.22
USP3-220ENST00000561381 TICAM2Q86XR7 235 aa13.69□□□□□ -0.22
USP3-220ENST00000561381 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.69□□□□□ -0.22
USP3-220ENST00000561381 SLC43A3Q8NBI5 491 aa13.69□□□□□ -0.22
USP3-220ENST00000561381 MORC4Q8TE76 937 aa13.69□□□□□ -0.22
USP3-220ENST00000561381 AP5M1Q9H0R1 490 aa13.69□□□□□ -0.22
USP3-220ENST00000561381 CPVLQ9H3G5 476 aa13.69□□□□□ -0.22
USP3-220ENST00000561381 RWDD1Q9H446 243 aaPredicted RBP13.69□□□□□ -0.22
USP3-220ENST00000561381 UMODL1Q5DID0 1318 aa13.68□□□□□ -0.22
USP3-220ENST00000561381 CDH23Q9H251 3354 aa13.68□□□□□ -0.22
USP3-220ENST00000561381 GRXCR1A8MXD5 290 aa13.68□□□□□ -0.22
USP3-220ENST00000561381 GOLGA8HP0CJ92 632 aa13.68□□□□□ -0.22
USP3-220ENST00000561381 SNHG28P0DPA3 235 aa13.68□□□□□ -0.22
USP3-220ENST00000561381 CALML3P27482 149 aa13.68□□□□□ -0.22
USP3-220ENST00000561381 ALDH5A1P51649 535 aaPredicted RBP13.68□□□□□ -0.22
USP3-220ENST00000561381 NUCB1Q02818 461 aa13.68□□□□□ -0.22
USP3-220ENST00000561381 PPIGQ13427 754 aaKnown RBP eCLIP13.68□□□□□ -0.225e-13■■□□□ 13.9
USP3-220ENST00000561381 CWC27Q6UX04 472 aaKnown RBP13.68□□□□□ -0.22
USP3-220ENST00000561381 MAFAQ8NHW3 353 aaPredicted RBP13.68□□□□□ -0.22
USP3-220ENST00000561381 EXOC6Q8TAG9 804 aa13.68□□□□□ -0.22
USP3-220ENST00000561381 VTA1Q9NP79 307 aa13.68□□□□□ -0.22
USP3-220ENST00000561381 EYSQ5T1H1 3165 aa13.68□□□□□ -0.22
USP3-220ENST00000561381 UNC80Q8N2C7 3258 aa13.67□□□□□ -0.22
USP3-220ENST00000561381 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.67□□□□□ -0.22
USP3-220ENST00000561381 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.67□□□□□ -0.22
USP3-220ENST00000561381 TLR3O15455 904 aaKnown RBP13.67□□□□□ -0.22
USP3-220ENST00000561381 CABYRO75952 493 aa13.67□□□□□ -0.22
USP3-220ENST00000561381 DNAJB2P25686 324 aa13.67□□□□□ -0.22
USP3-220ENST00000561381 PBX2P40425 430 aa13.67□□□□□ -0.22
USP3-220ENST00000561381 DUSP28Q4G0W2 176 aa13.67□□□□□ -0.22
USP3-220ENST00000561381 ZNF365Q70YC5 407 aa13.67□□□□□ -0.22
USP3-220ENST00000561381 TMEM199Q8N511 208 aa13.67□□□□□ -0.22
USP3-220ENST00000561381 TTC14Q96N46 770 aa13.67□□□□□ -0.22
USP3-220ENST00000561381 WDR11Q9BZH6 1224 aa13.67□□□□□ -0.22
USP3-220ENST00000561381 UBA5Q9GZZ9 404 aa13.67□□□□□ -0.22
USP3-220ENST00000561381 TRPV6Q9H1D0 765 aa13.67□□□□□ -0.22
USP3-220ENST00000561381 OSBPL3Q9H4L5 887 aa13.67□□□□□ -0.22
USP3-220ENST00000561381 Q9Y3F1 56 aa13.67□□□□□ -0.22
USP3-220ENST00000561381 ZNF213O14771 459 aa13.66□□□□□ -0.22
USP3-220ENST00000561381 ZEB2O60315 1214 aa13.66□□□□□ -0.22
USP3-220ENST00000561381 B4GALT4O60513 344 aa13.66□□□□□ -0.22
USP3-220ENST00000561381 PCP11498 1178 aaKnown RBP13.66□□□□□ -0.22
USP3-220ENST00000561381 RPS6P62753 249 aaKnown RBP13.66□□□□□ -0.22
USP3-220ENST00000561381 AAMPQ13685 434 aa13.66□□□□□ -0.22
USP3-220ENST00000561381 GRIN2CQ14957 1233 aa13.66□□□□□ -0.22
USP3-220ENST00000561381 RASIP1Q5U651 963 aa13.66□□□□□ -0.22
USP3-220ENST00000561381 RNF207Q6ZRF8 634 aa13.66□□□□□ -0.22
USP3-220ENST00000561381 ESR2Q92731 530 aa13.66□□□□□ -0.22
USP3-220ENST00000561381 COL25A1Q9BXS0 654 aaPredicted RBP13.66□□□□□ -0.22
USP3-220ENST00000561381 HIPK3Q9H422 1215 aa13.66□□□□□ -0.22
USP3-220ENST00000561381 RNF41Q9H4P4 317 aaPredicted RBP13.66□□□□□ -0.22
USP3-220ENST00000561381 DIAPH3Q9NSV4 1193 aa13.66□□□□□ -0.22
USP3-220ENST00000561381 ADD3Q9UEY8 706 aaKnown RBP13.66□□□□□ -0.22
USP3-220ENST00000561381 TMEM265A0A087WTH1 108 aa13.65□□□□□ -0.22
USP3-220ENST00000561381 B4E1Z4 1266 aa13.65□□□□□ -0.22
USP3-220ENST00000561381 KDM4AO75164 1064 aa13.65□□□□□ -0.22
USP3-220ENST00000561381 FOSL2P15408 326 aa13.65□□□□□ -0.22
USP3-220ENST00000561381 MFAP1P55081 439 aaKnown RBP13.65□□□□□ -0.22
USP3-220ENST00000561381 CCL23P55773 120 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms