RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 TSPY2A6NKD2 308 aa16.41■□□□□ 0.22
LDLR-213ENST00000560502 GRXCR1A8MXD5 290 aa16.41■□□□□ 0.22
LDLR-213ENST00000560502 FGRP09769 529 aa16.41■□□□□ 0.22
LDLR-213ENST00000560502 ACRP10323 421 aa16.41■□□□□ 0.22
LDLR-213ENST00000560502 SMPD1P17405 629 aa16.41■□□□□ 0.22
LDLR-213ENST00000560502 CYP2C18P33260 490 aa16.41■□□□□ 0.22
LDLR-213ENST00000560502 SNAP25P60880 206 aa16.41■□□□□ 0.22
LDLR-213ENST00000560502 CTDSPL2Q05D32 466 aa16.41■□□□□ 0.22
LDLR-213ENST00000560502 IKQ13123 557 aaPredicted RBP16.41■□□□□ 0.22
LDLR-213ENST00000560502 FSCN1Q16658 493 aaKnown RBP16.41■□□□□ 0.22
LDLR-213ENST00000560502 TAPT1Q6NXT6 567 aa16.41■□□□□ 0.22
LDLR-213ENST00000560502 SNX21Q969T3 373 aa16.41■□□□□ 0.22
LDLR-213ENST00000560502 CHMP4CQ96CF2 233 aa16.41■□□□□ 0.22
LDLR-213ENST00000560502 IL23AQ9NPF7 189 aa16.41■□□□□ 0.22
LDLR-213ENST00000560502 HELLSQ9NRZ9 838 aa16.41■□□□□ 0.22
LDLR-213ENST00000560502 ORC4O43929 436 aa16.4■□□□□ 0.22
LDLR-213ENST00000560502 NMIQ13287 307 aaPredicted RBP16.4■□□□□ 0.22
LDLR-213ENST00000560502 TMEM63BQ5T3F8 832 aa16.4■□□□□ 0.22
LDLR-213ENST00000560502 VPS53Q5VIR6 699 aa16.4■□□□□ 0.22
LDLR-213ENST00000560502 FBXO16Q8IX29 292 aaPredicted RBP16.4■□□□□ 0.22
LDLR-213ENST00000560502 HERVK_113Q902F9 699 aa16.4■□□□□ 0.22
LDLR-213ENST00000560502 SEZ6LQ9BYH1 1024 aa16.4■□□□□ 0.22
LDLR-213ENST00000560502 RANBP17Q9H2T7 1088 aaKnown RBP16.4■□□□□ 0.22
LDLR-213ENST00000560502 PDGFCQ9NRA1 345 aa16.4■□□□□ 0.22
LDLR-213ENST00000560502 Q9Y3F1 56 aa16.4■□□□□ 0.22
LDLR-213ENST00000560502 UMODL1Q5DID0 1318 aa16.4■□□□□ 0.22
LDLR-213ENST00000560502 NCOR1O75376 2440 aa16.39■□□□□ 0.21
LDLR-213ENST00000560502 SCN10AQ9Y5Y9 1956 aa16.39■□□□□ 0.21
LDLR-213ENST00000560502 ICAM1P05362 532 aa16.39■□□□□ 0.21
LDLR-213ENST00000560502 HSPA4P34932 840 aa16.39■□□□□ 0.21
LDLR-213ENST00000560502 ITGA7Q13683 1181 aa16.39■□□□□ 0.21
LDLR-213ENST00000560502 ALX1Q15699 326 aa16.39■□□□□ 0.21
LDLR-213ENST00000560502 IQSEC1Q6DN90 963 aa16.39■□□□□ 0.21
LDLR-213ENST00000560502 BTNL9Q6UXG8 535 aa16.39■□□□□ 0.21
LDLR-213ENST00000560502 NOL8Q76FK4 1167 aaKnown RBP16.39■□□□□ 0.21
LDLR-213ENST00000560502 DCAF4Q8WV16 495 aa16.39■□□□□ 0.21
LDLR-213ENST00000560502 PURBQ96QR8 312 aaKnown RBP16.39■□□□□ 0.21
LDLR-213ENST00000560502 KIF2CQ99661 725 aa16.39■□□□□ 0.21
LDLR-213ENST00000560502 NOC4LQ9BVI4 516 aaKnown RBP16.39■□□□□ 0.21
LDLR-213ENST00000560502 LSG1Q9H089 658 aaKnown RBP16.39■□□□□ 0.21
LDLR-213ENST00000560502 AP5M1Q9H0R1 490 aa16.39■□□□□ 0.21
LDLR-213ENST00000560502 HIPK3Q9H422 1215 aa16.39■□□□□ 0.21
LDLR-213ENST00000560502 VTA1Q9NP79 307 aa16.39■□□□□ 0.21
LDLR-213ENST00000560502 CCPG1Q9ULG6 757 aa16.39■□□□□ 0.21
LDLR-213ENST00000560502 CCDC171Q6TFL3 1326 aa16.39■□□□□ 0.21
LDLR-213ENST00000560502 DYNC1LI2O43237 492 aaPredicted RBP16.38■□□□□ 0.21
LDLR-213ENST00000560502 MCMDC2Q4G0Z9 681 aa16.38■□□□□ 0.21
LDLR-213ENST00000560502 VWCEQ96DN2 955 aa16.38■□□□□ 0.21
LDLR-213ENST00000560502 WNT8AQ9H1J5 351 aa16.38■□□□□ 0.21
LDLR-213ENST00000560502 CXXC1Q9P0U4 656 aaPredicted RBP16.38■□□□□ 0.21
LDLR-213ENST00000560502 LOC102724159A0A0B4J2E5 919 aa16.37■□□□□ 0.21
LDLR-213ENST00000560502 A0A0D9SFI3 127 aa16.37■□□□□ 0.21
LDLR-213ENST00000560502 ZEB2O60315 1214 aa16.37■□□□□ 0.21
LDLR-213ENST00000560502 B4GALT4O60513 344 aa16.37■□□□□ 0.21
LDLR-213ENST00000560502 RANBP6O60518 1105 aaKnown RBP16.37■□□□□ 0.21
LDLR-213ENST00000560502 PWP2Q15269 919 aaKnown RBP16.37■□□□□ 0.21
LDLR-213ENST00000560502 RAB30Q15771 203 aa16.37■□□□□ 0.21
LDLR-213ENST00000560502 CCDC96Q2M329 555 aa16.37■□□□□ 0.21
LDLR-213ENST00000560502 AKNAD1Q5T1N1 836 aa16.37■□□□□ 0.21
LDLR-213ENST00000560502 TTBK2Q6IQ55 1244 aa16.37■□□□□ 0.21
LDLR-213ENST00000560502 NSMFQ6X4W1 530 aa16.37■□□□□ 0.21
LDLR-213ENST00000560502 EEPD1Q7L9B9 569 aa16.37■□□□□ 0.21
LDLR-213ENST00000560502 SYMPKQ92797 1274 aaKnown RBP16.37■□□□□ 0.21
LDLR-213ENST00000560502 FAM227BQ96M60 508 aa16.37■□□□□ 0.21
LDLR-213ENST00000560502 TRPV6Q9H1D0 765 aa16.37■□□□□ 0.21
LDLR-213ENST00000560502 TANC1Q9C0D5 1861 aa16.37■□□□□ 0.21
LDLR-213ENST00000560502 SCN5AQ14524 2016 aa16.36■□□□□ 0.21
LDLR-213ENST00000560502 SLC16A2P36021 539 aa16.36■□□□□ 0.21
LDLR-213ENST00000560502 ALDH5A1P51649 535 aaPredicted RBP16.36■□□□□ 0.21
LDLR-213ENST00000560502 PSMC6P62333 389 aa16.36■□□□□ 0.21
LDLR-213ENST00000560502 BAATQ14032 418 aaPredicted RBP16.36■□□□□ 0.21
LDLR-213ENST00000560502 DUSP28Q4G0W2 176 aa16.36■□□□□ 0.21
LDLR-213ENST00000560502 TJAP1Q5JTD0 557 aa16.36■□□□□ 0.21
LDLR-213ENST00000560502 SYDE2Q5VT97 1194 aa16.36■□□□□ 0.21
LDLR-213ENST00000560502 HSCBQ8IWL3 235 aa16.36■□□□□ 0.21
LDLR-213ENST00000560502 GAS2L1Q99501 681 aaPredicted RBP16.36■□□□□ 0.21
LDLR-213ENST00000560502 IL25Q9H293 177 aa16.36■□□□□ 0.21
LDLR-213ENST00000560502 PRDM12Q9H4Q4 367 aa16.36■□□□□ 0.21
LDLR-213ENST00000560502 MTMR7Q9Y216 660 aa16.36■□□□□ 0.21
LDLR-213ENST00000560502 ZMYM6O95789 1325 aa16.36■□□□□ 0.21
LDLR-213ENST00000560502 LAMA4Q16363 1823 aa16.35■□□□□ 0.21
LDLR-213ENST00000560502 RBM47A0AV96 593 aaKnown RBP16.35■□□□□ 0.21
LDLR-213ENST00000560502 NFIBO00712 420 aa16.35■□□□□ 0.21
LDLR-213ENST00000560502 ST18O60284 1047 aa16.35■□□□□ 0.21
LDLR-213ENST00000560502 FGBP02675 491 aa16.35■□□□□ 0.21
LDLR-213ENST00000560502 TOP1P11387 765 aaKnown RBP16.35■□□□□ 0.21
LDLR-213ENST00000560502 ADGRE1Q14246 886 aa16.35■□□□□ 0.21
LDLR-213ENST00000560502 RNF20Q5VTR2 975 aa16.35■□□□□ 0.21
LDLR-213ENST00000560502 CLEC4DQ8WXI8 215 aa16.35■□□□□ 0.21
LDLR-213ENST00000560502 MAP4K1Q92918 833 aa16.35■□□□□ 0.21
LDLR-213ENST00000560502 KCNB2Q92953 911 aa16.35■□□□□ 0.21
LDLR-213ENST00000560502 TMEM47Q9BQJ4 181 aa16.35■□□□□ 0.21
LDLR-213ENST00000560502 ALDH8A1Q9H2A2 487 aaPredicted RBP16.35■□□□□ 0.21
LDLR-213ENST00000560502 MTIF3Q9H2K0 278 aaKnown RBP16.35■□□□□ 0.21
LDLR-213ENST00000560502 PRDM6Q9NQX0 595 aa16.35■□□□□ 0.21
LDLR-213ENST00000560502 TCP11L1Q9NUJ3 509 aa16.35■□□□□ 0.21
LDLR-213ENST00000560502 ADD3Q9UEY8 706 aaKnown RBP16.35■□□□□ 0.21
LDLR-213ENST00000560502 YBX2Q9Y2T7 364 aaKnown RBP16.35■□□□□ 0.21
LDLR-213ENST00000560502 CHD7Q9P2D1 2997 aa16.34■□□□□ 0.21
LDLR-213ENST00000560502 FGAP02671 866 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms