RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 TMEM88BA6NKF7 163 aa13.9□□□□□ -0.18
HERC1-205ENST00000559886 BTBD19C9JJ37 291 aa13.9□□□□□ -0.18
HERC1-205ENST00000559886 GCOM1H8Y6P7 765 aaPredicted RBP13.9□□□□□ -0.18
HERC1-205ENST00000559886 NFIBO00712 420 aa13.9□□□□□ -0.18
HERC1-205ENST00000559886 CFBP00751 764 aa13.9□□□□□ -0.18
HERC1-205ENST00000559886 POLR2MP0CAP2 368 aa13.9□□□□□ -0.18
HERC1-205ENST00000559886 HOXA13P31271 388 aaPredicted RBP13.9□□□□□ -0.18
HERC1-205ENST00000559886 STAT3P40763 770 aa13.9□□□□□ -0.18
HERC1-205ENST00000559886 MUM1L1Q5H9M0 696 aa13.9□□□□□ -0.18
HERC1-205ENST00000559886 NEK8Q86SG6 692 aa13.9□□□□□ -0.18
HERC1-205ENST00000559886 MCF2L2Q86YR7 1114 aa13.9□□□□□ -0.18
HERC1-205ENST00000559886 SAMD3Q8N6K7 520 aa13.9□□□□□ -0.18
HERC1-205ENST00000559886 PGBD1Q96JS3 809 aa13.9□□□□□ -0.18
HERC1-205ENST00000559886 BTBD7Q9P203 1132 aa13.9□□□□□ -0.18
HERC1-205ENST00000559886 PNMA3Q9UL41 463 aa13.9□□□□□ -0.18
HERC1-205ENST00000559886 CEP131Q9UPN4 1083 aa13.9□□□□□ -0.18
HERC1-205ENST00000559886 MORC2Q9Y6X9 1032 aaPredicted RBP13.9□□□□□ -0.18
HERC1-205ENST00000559886 TESPA1A2RU30 521 aaPredicted RBP13.89□□□□□ -0.19
HERC1-205ENST00000559886 PPP6R2O75170 966 aa13.89□□□□□ -0.19
HERC1-205ENST00000559886 BMP15O95972 392 aa13.89□□□□□ -0.19
HERC1-205ENST00000559886 HSD17B4P51659 736 aa13.89□□□□□ -0.19
HERC1-205ENST00000559886 UBE2HP62256 183 aa13.89□□□□□ -0.19
HERC1-205ENST00000559886 TKFCQ3LXA3 575 aa13.89□□□□□ -0.19
HERC1-205ENST00000559886 HHIPL1Q96JK4 782 aa13.89□□□□□ -0.19
HERC1-205ENST00000559886 ANO3Q9BYT9 981 aa13.89□□□□□ -0.19
HERC1-205ENST00000559886 HOMER2Q9NSB8 354 aa13.89□□□□□ -0.19
HERC1-205ENST00000559886 MAP3K20Q9NYL2 800 aaKnown RBP13.89□□□□□ -0.19
HERC1-205ENST00000559886 SPDYE3A6NKU9 549 aa13.89□□□□□ -0.19
HERC1-205ENST00000559886 PDHXO00330 501 aa13.89□□□□□ -0.19
HERC1-205ENST00000559886 SLC10A3P09131 477 aa13.89□□□□□ -0.19
HERC1-205ENST00000559886 ZNF174Q15697 407 aa13.89□□□□□ -0.19
HERC1-205ENST00000559886 RNF146Q9NTX7 359 aa13.89□□□□□ -0.19
HERC1-205ENST00000559886 EDIL3O43854 480 aa13.88□□□□□ -0.19
HERC1-205ENST00000559886 PLS1Q14651 629 aa13.88□□□□□ -0.19
HERC1-205ENST00000559886 PTPN18Q99952 460 aa13.88□□□□□ -0.19
HERC1-205ENST00000559886 RBPJLQ9UBG7 517 aa13.88□□□□□ -0.19
HERC1-205ENST00000559886 ABT1Q9ULW3 272 aaKnown RBP13.88□□□□□ -0.19
HERC1-205ENST00000559886 CNMDO75829 334 aa13.88□□□□□ -0.19
HERC1-205ENST00000559886 MCM7P33993 719 aa13.88□□□□□ -0.19
HERC1-205ENST00000559886 ME1P48163 572 aa13.88□□□□□ -0.19
HERC1-205ENST00000559886 SKOR2Q2VWA4 1001 aaPredicted RBP13.88□□□□□ -0.19
HERC1-205ENST00000559886 LETM2Q2VYF4 491 aa13.88□□□□□ -0.19
HERC1-205ENST00000559886 RIOX2Q8IUF8 465 aa13.88□□□□□ -0.19
HERC1-205ENST00000559886 JMYQ8N9B5 988 aa13.88□□□□□ -0.19
HERC1-205ENST00000559886 GTF3C2Q8WUA4 911 aaPredicted RBP13.88□□□□□ -0.19
HERC1-205ENST00000559886 CRYGNQ8WXF5 182 aa13.88□□□□□ -0.19
HERC1-205ENST00000559886 MAF1Q9H063 256 aa13.88□□□□□ -0.19
HERC1-205ENST00000559886 SPATC1LQ9H0A9 340 aa13.88□□□□□ -0.19
HERC1-205ENST00000559886 PCDHA7Q9UN72 937 aa13.88□□□□□ -0.19
HERC1-205ENST00000559886 RABGAP1Q9Y3P9 1069 aa13.88□□□□□ -0.19
HERC1-205ENST00000559886 MANSC4A6NHS7 340 aaPredicted RBP13.87□□□□□ -0.19
HERC1-205ENST00000559886 FAM155AB1AL88 458 aaPredicted RBP13.87□□□□□ -0.19
HERC1-205ENST00000559886 TRAK2O60296 914 aa13.87□□□□□ -0.19
HERC1-205ENST00000559886 MARCKSP29966 332 aaPredicted RBP13.87□□□□□ -0.19
HERC1-205ENST00000559886 SREBF1P36956 1147 aa13.87□□□□□ -0.19
HERC1-205ENST00000559886 USP11P51784 963 aa13.87□□□□□ -0.19
HERC1-205ENST00000559886 ATP2C1P98194 919 aaPredicted RBP13.87□□□□□ -0.19
HERC1-205ENST00000559886 PTGDRQ13258 359 aa13.87□□□□□ -0.19
HERC1-205ENST00000559886 ORC2Q13416 577 aaPredicted RBP13.87□□□□□ -0.19
HERC1-205ENST00000559886 FCHSD1Q86WN1 690 aa13.87□□□□□ -0.19
HERC1-205ENST00000559886 FAM43AQ8N2R8 423 aa13.87□□□□□ -0.19
HERC1-205ENST00000559886 CCDC102AQ96A19 550 aa13.87□□□□□ -0.19
HERC1-205ENST00000559886 GOLGA6L4A6NEF3 574 aa13.87□□□□□ -0.19
HERC1-205ENST00000559886 CCNT1O60563 726 aaKnown RBP13.87□□□□□ -0.19
HERC1-205ENST00000559886 PEX10O60683 326 aa13.87□□□□□ -0.19
HERC1-205ENST00000559886 CYP2C8P10632 490 aa13.87□□□□□ -0.19
HERC1-205ENST00000559886 ADALQ6DHV7 355 aa13.87□□□□□ -0.19
HERC1-205ENST00000559886 C4orf32Q8N8J7 132 aa13.87□□□□□ -0.19
HERC1-205ENST00000559886 CHST13Q8NET6 341 aa13.87□□□□□ -0.19
HERC1-205ENST00000559886 GPT2Q8TD30 523 aa13.87□□□□□ -0.19
HERC1-205ENST00000559886 PAGR1Q9BTK6 254 aa13.87□□□□□ -0.19
HERC1-205ENST00000559886 ACAD9Q9H845 621 aa13.87□□□□□ -0.19
HERC1-205ENST00000559886 TXNRD2Q9NNW7 524 aa13.87□□□□□ -0.19
HERC1-205ENST00000559886 DDX49Q9Y6V7 483 aaKnown RBP13.87□□□□□ -0.19
HERC1-205ENST00000559886 MBD3O95983 291 aa13.86□□□□□ -0.19
HERC1-205ENST00000559886 AXDND1Q5T1B0 1012 aaPredicted RBP13.86□□□□□ -0.19
HERC1-205ENST00000559886 PPP4R3AQ6IN85 833 aa13.86□□□□□ -0.19
HERC1-205ENST00000559886 COL20A1Q9P218 1284 aa13.86□□□□□ -0.19
HERC1-205ENST00000559886 PTPREP23469 700 aa13.86□□□□□ -0.19
HERC1-205ENST00000559886 RPS6P62753 249 aaKnown RBP13.86□□□□□ -0.19
HERC1-205ENST00000559886 ARHGAP4P98171 946 aa13.86□□□□□ -0.19
HERC1-205ENST00000559886 KLHL40Q2TBA0 621 aa13.86□□□□□ -0.19
HERC1-205ENST00000559886 RNF207Q6ZRF8 634 aa13.86□□□□□ -0.19
HERC1-205ENST00000559886 KRI1Q8N9T8 703 aaKnown RBP13.86□□□□□ -0.19
HERC1-205ENST00000559886 SYTL5Q8TDW5 730 aaPredicted RBP13.86□□□□□ -0.19
HERC1-205ENST00000559886 SMCR8Q8TEV9 937 aaPredicted RBP13.86□□□□□ -0.19
HERC1-205ENST00000559886 NAP1L4Q99733 375 aaKnown RBP13.86□□□□□ -0.19
HERC1-205ENST00000559886 FBXO2Q9UK22 296 aaPredicted RBP13.86□□□□□ -0.19
HERC1-205ENST00000559886 MRVI1Q9Y6F6 885 aa13.86□□□□□ -0.19
HERC1-205ENST00000559886 LCTP09848 1927 aa13.85□□□□□ -0.19
HERC1-205ENST00000559886 A0A1W2PQ27 194 aa13.85□□□□□ -0.19
HERC1-205ENST00000559886 A0A1W2PQ64 194 aa13.85□□□□□ -0.19
HERC1-205ENST00000559886 A0A1W2PQD8 194 aa13.85□□□□□ -0.19
HERC1-205ENST00000559886 GCFC2P16383 781 aaKnown RBP13.85□□□□□ -0.19
HERC1-205ENST00000559886 INHBEP58166 350 aa13.85□□□□□ -0.19
HERC1-205ENST00000559886 MOXD1Q6UVY6 613 aa13.85□□□□□ -0.19
HERC1-205ENST00000559886 NSMFQ6X4W1 530 aa13.85□□□□□ -0.19
HERC1-205ENST00000559886 MOV10L1Q9BXT6 1211 aaKnown RBP13.85□□□□□ -0.19
HERC1-205ENST00000559886 EHMT1Q9H9B1 1298 aa13.85□□□□□ -0.19
HERC1-205ENST00000559886 ZCCHC17Q9NP64 241 aaKnown RBP13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms