RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 CDC37Q16543 378 aaPredicted RBP12.81□□□□□ -0.36
SYNE2-227ENST00000557307 FAM109BQ6ICB4 259 aaPredicted RBP12.81□□□□□ -0.36
SYNE2-227ENST00000557307 GPR153Q6NV75 609 aa12.81□□□□□ -0.36
SYNE2-227ENST00000557307 STOX1Q6ZVD7 989 aa12.81□□□□□ -0.36
SYNE2-227ENST00000557307 NOL8Q76FK4 1167 aaKnown RBP12.81□□□□□ -0.36
SYNE2-227ENST00000557307 C16orf59Q7L2K0 433 aa12.81□□□□□ -0.36
SYNE2-227ENST00000557307 STAG2Q8N3U4 1231 aa12.81□□□□□ -0.36
SYNE2-227ENST00000557307 COPS5Q92905 334 aa12.81□□□□□ -0.36
SYNE2-227ENST00000557307 GLT1D1Q96MS3 346 aa12.81□□□□□ -0.36
SYNE2-227ENST00000557307 TTC14Q96N46 770 aa12.81□□□□□ -0.36
SYNE2-227ENST00000557307 ZSCAN10Q96SZ4 725 aaPredicted RBP12.81□□□□□ -0.36
SYNE2-227ENST00000557307 PPP1R12CQ9BZL4 782 aa12.81□□□□□ -0.36
SYNE2-227ENST00000557307 TTYH1Q9H313 450 aaPredicted RBP12.81□□□□□ -0.36
SYNE2-227ENST00000557307 RNF41Q9H4P4 317 aaPredicted RBP12.81□□□□□ -0.36
SYNE2-227ENST00000557307 COL20A1Q9P218 1284 aa12.81□□□□□ -0.36
SYNE2-227ENST00000557307 WDR19Q8NEZ3 1342 aa12.81□□□□□ -0.36
SYNE2-227ENST00000557307 SPTBN5Q9NRC6 3674 aaKnown RBP12.81□□□□□ -0.36
SYNE2-227ENST00000557307 A0A0U1RQG5 324 aaPredicted RBP12.8□□□□□ -0.36
SYNE2-227ENST00000557307 ARVCFO00192 962 aa12.8□□□□□ -0.36
SYNE2-227ENST00000557307 ARIH2O95376 493 aa12.8□□□□□ -0.36
SYNE2-227ENST00000557307 CYP21A2P08686 494 aa12.8□□□□□ -0.36
SYNE2-227ENST00000557307 RAG1P15918 1043 aa12.8□□□□□ -0.36
SYNE2-227ENST00000557307 SEC23AQ15436 765 aa12.8□□□□□ -0.36
SYNE2-227ENST00000557307 FSCN1Q16658 493 aaKnown RBP12.8□□□□□ -0.36
SYNE2-227ENST00000557307 RNF207Q6ZRF8 634 aa12.8□□□□□ -0.36
SYNE2-227ENST00000557307 KIAA1211Q6ZU35 1233 aa12.8□□□□□ -0.36
SYNE2-227ENST00000557307 DGKHQ86XP1 1220 aa12.8□□□□□ -0.36
SYNE2-227ENST00000557307 ADGRF4Q8IZF3 695 aa12.8□□□□□ -0.36
SYNE2-227ENST00000557307 NUP133Q8WUM0 1156 aa12.8□□□□□ -0.36
SYNE2-227ENST00000557307 TOX2Q96NM4 488 aa12.8□□□□□ -0.36
SYNE2-227ENST00000557307 A0A0C4DFX4 3053 aa12.8□□□□□ -0.36
SYNE2-227ENST00000557307 ELP1O95163 1332 aa12.8□□□□□ -0.36
SYNE2-227ENST00000557307 CHD7Q9P2D1 2997 aa12.8□□□□□ -0.36
SYNE2-227ENST00000557307 OPLAHO14841 1288 aa12.79□□□□□ -0.36
SYNE2-227ENST00000557307 PPP1R11O60927 126 aaPredicted RBP12.79□□□□□ -0.36
SYNE2-227ENST00000557307 CD4P01730 458 aa12.79□□□□□ -0.36
SYNE2-227ENST00000557307 EDNRBP24530 442 aa12.79□□□□□ -0.36
SYNE2-227ENST00000557307 CHMLP26374 656 aa12.79□□□□□ -0.36
SYNE2-227ENST00000557307 CYP2C18P33260 490 aa12.79□□□□□ -0.36
SYNE2-227ENST00000557307 FPGSQ05932 587 aa12.79□□□□□ -0.36
SYNE2-227ENST00000557307 IMMTQ16891 758 aaKnown RBP12.79□□□□□ -0.36
SYNE2-227ENST00000557307 QRICH1Q2TAL8 776 aa12.79□□□□□ -0.36
SYNE2-227ENST00000557307 SLC43A3Q8NBI5 491 aa12.79□□□□□ -0.36
SYNE2-227ENST00000557307 PCSK9Q8NBP7 692 aaKnown RBP12.79□□□□□ -0.36
SYNE2-227ENST00000557307 ANKS1AQ92625 1134 aa12.79□□□□□ -0.36
SYNE2-227ENST00000557307 VTI1AQ96AJ9 217 aa12.79□□□□□ -0.36
SYNE2-227ENST00000557307 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.79□□□□□ -0.36
SYNE2-227ENST00000557307 KAT14Q9H8E8 782 aa12.79□□□□□ -0.36
SYNE2-227ENST00000557307 JMJD4Q9H9V9 463 aa12.79□□□□□ -0.36
SYNE2-227ENST00000557307 VTA1Q9NP79 307 aa12.79□□□□□ -0.36
SYNE2-227ENST00000557307 TRIP12Q14669 1992 aaPredicted RBP12.78□□□□□ -0.36
SYNE2-227ENST00000557307 RBM47A0AV96 593 aaKnown RBP12.78□□□□□ -0.36
SYNE2-227ENST00000557307 DCDC2CA8MYV0 355 aa12.78□□□□□ -0.36
SYNE2-227ENST00000557307 HIP1O00291 1037 aa12.78□□□□□ -0.36
SYNE2-227ENST00000557307 B4GALT4O60513 344 aa12.78□□□□□ -0.36
SYNE2-227ENST00000557307 TIMP1P01033 207 aa12.78□□□□□ -0.36
SYNE2-227ENST00000557307 ACRP10323 421 aa12.78□□□□□ -0.36
SYNE2-227ENST00000557307 CSF2RAP15509 400 aa12.78□□□□□ -0.36
SYNE2-227ENST00000557307 CHST3Q7LGC8 479 aa12.78□□□□□ -0.36
SYNE2-227ENST00000557307 VWCEQ96DN2 955 aa12.78□□□□□ -0.36
SYNE2-227ENST00000557307 RNPC3Q96LT9 517 aaKnown RBP12.78□□□□□ -0.36
SYNE2-227ENST00000557307 TAAR1Q96RJ0 339 aa12.78□□□□□ -0.36
SYNE2-227ENST00000557307 WDR11Q9BZH6 1224 aa12.78□□□□□ -0.36
SYNE2-227ENST00000557307 TRPV6Q9H1D0 765 aa12.78□□□□□ -0.36
SYNE2-227ENST00000557307 SPC25Q9HBM1 224 aa12.78□□□□□ -0.36
SYNE2-227ENST00000557307 VAT1LQ9HCJ6 419 aa12.78□□□□□ -0.36
SYNE2-227ENST00000557307 GRXCR1A8MXD5 290 aa12.77□□□□□ -0.37
SYNE2-227ENST00000557307 ANTXR2P58335 489 aa12.77□□□□□ -0.37
SYNE2-227ENST00000557307 ITGA7Q13683 1181 aa12.77□□□□□ -0.37
SYNE2-227ENST00000557307 DUSP28Q4G0W2 176 aa12.77□□□□□ -0.37
SYNE2-227ENST00000557307 GPATCH4Q5T3I0 446 aaKnown RBP12.77□□□□□ -0.37
SYNE2-227ENST00000557307 IQSEC1Q6DN90 963 aa12.77□□□□□ -0.37
SYNE2-227ENST00000557307 MFSD5Q6N075 450 aa12.77□□□□□ -0.37
SYNE2-227ENST00000557307 IQCA1Q86XH1 822 aa12.77□□□□□ -0.37
SYNE2-227ENST00000557307 SYTL5Q8TDW5 730 aaPredicted RBP12.77□□□□□ -0.37
SYNE2-227ENST00000557307 WNT8AQ9H1J5 351 aa12.77□□□□□ -0.37
SYNE2-227ENST00000557307 GPHNQ9NQX3 736 aaPredicted RBP12.77□□□□□ -0.37
SYNE2-227ENST00000557307 MAD2L2Q9UI95 211 aa12.77□□□□□ -0.37
SYNE2-227ENST00000557307 STXBP5LQ9Y2K9 1186 aa12.77□□□□□ -0.37
SYNE2-227ENST00000557307 RAD50Q92878 1312 aa12.77□□□□□ -0.37
SYNE2-227ENST00000557307 VCANP13611 3396 aa12.77□□□□□ -0.37
SYNE2-227ENST00000557307 TET1Q8NFU7 2136 aa12.76□□□□□ -0.37
SYNE2-227ENST00000557307 ASPRV1Q53RT3 343 aa12.76□□□□□ -0.37
SYNE2-227ENST00000557307 TMEM240Q5SV17 173 aa12.76□□□□□ -0.37
SYNE2-227ENST00000557307 ZNF697Q5TEC3 545 aa12.76□□□□□ -0.37
SYNE2-227ENST00000557307 OR6J1Q8NGC5 347 aa12.76□□□□□ -0.37
SYNE2-227ENST00000557307 MYLIPQ8WY64 445 aa12.76□□□□□ -0.37
SYNE2-227ENST00000557307 AP5M1Q9H0R1 490 aa12.76□□□□□ -0.37
SYNE2-227ENST00000557307 ADD3Q9UEY8 706 aaKnown RBP12.76□□□□□ -0.37
SYNE2-227ENST00000557307 MROH7Q68CQ1 1323 aa12.76□□□□□ -0.37
SYNE2-227ENST00000557307 E7EWF7 191 aa12.75□□□□□ -0.37
SYNE2-227ENST00000557307 SGSM2O43147 1006 aa12.75□□□□□ -0.37
SYNE2-227ENST00000557307 ABCB11O95342 1321 aa12.75□□□□□ -0.37
SYNE2-227ENST00000557307 MYL3P08590 195 aa12.75□□□□□ -0.37
SYNE2-227ENST00000557307 PARP1P09874 1014 aaKnown RBP12.75□□□□□ -0.37
SYNE2-227ENST00000557307 PBX2P40425 430 aa12.75□□□□□ -0.37
SYNE2-227ENST00000557307 CCL23P55773 120 aa12.75□□□□□ -0.37
SYNE2-227ENST00000557307 SMAD3P84022 425 aaKnown RBP12.75□□□□□ -0.37
SYNE2-227ENST00000557307 PURAQ00577 322 aaKnown RBP12.75□□□□□ -0.37
SYNE2-227ENST00000557307 PDE4DQ08499 809 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms